View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2508_low_6 (Length: 316)

Name: NF2508_low_6
Description: NF2508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2508_low_6
NF2508_low_6
[»] chr7 (19 HSPs)
chr7 (42-299)||(19643166-19643420)
chr7 (3-81)||(33845089-33845167)
chr7 (1-68)||(43807772-43807839)
chr7 (3-81)||(12007132-12007210)
chr7 (3-81)||(27570390-27570468)
chr7 (3-81)||(43081836-43081914)
chr7 (3-81)||(47448873-47448951)
chr7 (3-81)||(32777653-32777731)
chr7 (3-81)||(34978343-34978421)
chr7 (3-81)||(13152639-13152718)
chr7 (3-81)||(33057426-33057504)
chr7 (3-65)||(35098666-35098728)
chr7 (1-59)||(46880947-46881005)
chr7 (3-81)||(29723871-29723951)
chr7 (1-62)||(40854620-40854681)
chr7 (3-44)||(41985084-41985125)
chr7 (4-65)||(47684209-47684270)
chr7 (21-77)||(15325590-15325646)
chr7 (1-77)||(37352155-37352231)
[»] chr4 (25 HSPs)
chr4 (133-299)||(33918689-33918858)
chr4 (1-81)||(41262291-41262371)
chr4 (3-81)||(5386419-5386497)
chr4 (3-81)||(29227189-29227267)
chr4 (1-81)||(52204895-52204975)
chr4 (3-81)||(51255793-51255871)
chr4 (1-70)||(26600156-26600225)
chr4 (3-81)||(38519840-38519918)
chr4 (3-81)||(39158152-39158230)
chr4 (34-81)||(18316015-18316062)
chr4 (3-81)||(5932710-5932788)
chr4 (40-82)||(22813667-22813709)
chr4 (7-81)||(36130299-36130373)
chr4 (1-83)||(40348838-40348920)
chr4 (1-75)||(55266070-55266144)
chr4 (1-61)||(31574906-31574966)
chr4 (1-68)||(37297093-37297160)
chr4 (1-68)||(39440528-39440595)
chr4 (3-82)||(51577661-51577740)
chr4 (3-81)||(149431-149509)
chr4 (31-65)||(9393840-9393874)
chr4 (3-68)||(43175030-43175095)
chr4 (7-68)||(46634150-46634211)
chr4 (1-61)||(36177950-36178010)
chr4 (1-61)||(38381043-38381103)
[»] scaffold0618 (1 HSPs)
scaffold0618 (1-81)||(8899-8979)
[»] chr8 (20 HSPs)
chr8 (1-81)||(44090931-44091011)
chr8 (3-81)||(44061764-44061842)
chr8 (1-81)||(34435683-34435763)
chr8 (3-81)||(1068653-1068731)
chr8 (3-81)||(9629610-9629688)
chr8 (3-81)||(26026943-26027021)
chr8 (3-81)||(33451511-33451587)
chr8 (1-81)||(5600933-5601013)
chr8 (1-81)||(5639607-5639687)
chr8 (3-82)||(9630170-9630249)
chr8 (7-81)||(15716922-15716996)
chr8 (7-81)||(25987733-25987807)
chr8 (8-81)||(37172112-37172185)
chr8 (18-81)||(12241134-12241197)
chr8 (1-68)||(32501156-32501223)
chr8 (3-70)||(43397827-43397894)
chr8 (3-81)||(33107813-33107891)
chr8 (1-63)||(45405948-45406010)
chr8 (5-62)||(3413158-3413215)
chr8 (1-61)||(44825487-44825547)
[»] scaffold0201 (1 HSPs)
scaffold0201 (3-82)||(8519-8598)
[»] chr5 (16 HSPs)
chr5 (1-81)||(32872844-32872924)
chr5 (3-70)||(11954478-11954545)
chr5 (1-81)||(17097748-17097828)
chr5 (3-81)||(611911-611989)
chr5 (3-81)||(13089728-13089806)
chr5 (3-81)||(42446237-42446315)
chr5 (4-65)||(16972062-16972123)
chr5 (21-82)||(32478441-32478502)
chr5 (3-60)||(39195764-39195821)
chr5 (1-77)||(19981936-19982012)
chr5 (3-81)||(14532551-14532629)
chr5 (3-61)||(21210865-21210923)
chr5 (3-68)||(19521963-19522028)
chr5 (5-62)||(29463044-29463101)
chr5 (3-68)||(35646429-35646494)
chr5 (3-68)||(36738994-36739059)
[»] chr2 (19 HSPs)
chr2 (3-79)||(11965840-11965916)
chr2 (3-81)||(37316761-37316839)
chr2 (4-75)||(30831802-30831873)
chr2 (1-75)||(26481042-26481116)
chr2 (1-81)||(37731146-37731226)
chr2 (7-81)||(31578485-31578559)
chr2 (3-68)||(6511297-6511362)
chr2 (3-81)||(19916702-19916780)
chr2 (3-68)||(43057111-43057176)
chr2 (3-68)||(43487425-43487490)
chr2 (1-65)||(5361838-5361902)
chr2 (3-82)||(32944449-32944528)
chr2 (42-81)||(36587417-36587456)
chr2 (3-70)||(37003657-37003724)
chr2 (3-81)||(8847534-8847612)
chr2 (3-81)||(18510722-18510800)
chr2 (3-68)||(9207636-9207701)
chr2 (3-68)||(19109053-19109118)
chr2 (1-81)||(44239081-44239161)
[»] chr1 (15 HSPs)
chr1 (3-82)||(38878846-38878925)
chr1 (3-75)||(4213119-4213191)
chr1 (3-81)||(40439786-40439864)
chr1 (3-81)||(47642553-47642631)
chr1 (3-81)||(48983614-48983692)
chr1 (3-81)||(17082689-17082767)
chr1 (3-81)||(48858870-48858948)
chr1 (3-81)||(4857957-4858035)
chr1 (3-81)||(7919008-7919086)
chr1 (3-68)||(35369746-35369811)
chr1 (3-68)||(649815-649880)
chr1 (3-64)||(12657268-12657329)
chr1 (3-68)||(33100854-33100919)
chr1 (3-68)||(37274993-37275058)
chr1 (46-82)||(24806169-24806205)
[»] chr3 (26 HSPs)
chr3 (3-81)||(34307487-34307565)
chr3 (1-81)||(33472365-33472445)
chr3 (3-70)||(288772-288839)
chr3 (34-81)||(4494183-4494230)
chr3 (1-75)||(38671662-38671736)
chr3 (3-80)||(31104711-31104788)
chr3 (1-62)||(41443156-41443217)
chr3 (1-65)||(6178388-6178452)
chr3 (34-70)||(37503705-37503741)
chr3 (3-70)||(39713994-39714061)
chr3 (3-69)||(27168640-27168706)
chr3 (3-68)||(5114124-5114189)
chr3 (3-68)||(5244275-5244340)
chr3 (1-70)||(7934019-7934087)
chr3 (31-68)||(13735203-13735240)
chr3 (7-68)||(34064065-34064126)
chr3 (3-68)||(35597208-35597273)
chr3 (3-68)||(38926674-38926739)
chr3 (1-38)||(39540279-39540316)
chr3 (3-68)||(41505537-41505602)
chr3 (3-68)||(52254098-52254163)
chr3 (3-67)||(9692772-9692836)
chr3 (1-65)||(9753263-9753327)
chr3 (3-62)||(14207223-14207282)
chr3 (3-62)||(14214971-14215030)
chr3 (1-65)||(50314669-50314733)
[»] scaffold0432 (1 HSPs)
scaffold0432 (7-75)||(6472-6540)
[»] chr6 (9 HSPs)
chr6 (3-81)||(11635481-11635559)
chr6 (3-82)||(5739709-5739788)
chr6 (7-81)||(18065036-18065110)
chr6 (3-81)||(8645355-8645433)
chr6 (3-81)||(33712367-33712445)
chr6 (40-81)||(3772439-3772480)
chr6 (3-63)||(29459066-29459126)
chr6 (42-81)||(14910262-14910301)
chr6 (1-65)||(27612919-27612983)
[»] scaffold0110 (1 HSPs)
scaffold0110 (3-79)||(28275-28351)
[»] scaffold0276 (1 HSPs)
scaffold0276 (1-81)||(1689-1769)
[»] scaffold0085 (1 HSPs)
scaffold0085 (13-65)||(22816-22868)


Alignment Details
Target: chr7 (Bit Score: 220; Significance: 1e-121; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 42 - 299
Target Start/End: Complemental strand, 19643420 - 19643166
Alignment:
Q  42 tctattgctttgatttttgtgtcactatccaaatttctttaatcgtccaacaagttgatgtcagaggaaatgattgttcaaataatattgctcttttatt 141  Q
    |||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  19643420 tctattgctttgatttttgtgtcactatccgaatttctttgatcgtccaacaagttgctgtcagaggaaatgattgttcaaataatattgctcttttatt 19643321  T
Q  142 atttattgtcaactccttccttctctaaaaaacacgaaacccaaatttcttcaccatctctctatcccaaggattcaagctctgacgaagtagtccttga 241  Q
    |||||| ||| ||||||||| ||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||    
T  19643320 atttatcgtccactccttccatctctaaaaaacacgaaacccaaatttctt---catctctctatcccaaggattcaagctctgacgaagtagtccttga 19643224  T
Q  242 tctctcacccatgataaaagtctacaaagacggtcacatagaaagactctcaggatcc 299  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19643223 tctctcacccatgataaaagtctacaaagacggtcacatagaaagactctcaggatcc 19643166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 3 - 81
Target Start/End: Original strand, 33845089 - 33845167
Alignment:
Q  3 tttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcactatccaaatttcttt 81  Q
    ||||||| |||||| ||||||||||| ||| ||| ||| ||| ||||||||||||||||||||||| | ||||||||||    
T  33845089 tttctctttcatacacacattgttcttctactttttttctctgttgctttgatttttgtgtcactacctaaatttcttt 33845167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 43807839 - 43807772
Alignment:
Q  1 attttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcacta 68  Q
    ||||| ||||||||||||||||||||||  || ||||| ||||||||  |||||||||||||||||||    
T  43807839 attttttctctcatactcacattgttcttttactttctctttctattaatttgatttttgtgtcacta 43807772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 3 - 81
Target Start/End: Complemental strand, 12007210 - 12007132
Alignment:
Q  3 tttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcactatccaaatttcttt 81  Q
    ||||||||||||||||||||  |  | ||| ||||| | ||||||||||||||||||||| ||||||| ||||||||||    
T  12007210 tttctctctcatactcacatgatcattctactttctctctctattgctttgatttttgtgccactatctaaatttcttt 12007132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 3 - 81
Target Start/End: Original strand, 27570390 - 27570468
Alignment:
Q  3 tttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcactatccaaatttcttt 81  Q
    ||||||||||||||||||||  |  | ||| ||| ||| ||||||||||||||||||||| ||||||| ||||||||||    
T  27570390 tttctctctcatactcacatgatcattctactttttttctctattgctttgatttttgtgccactatcaaaatttcttt 27570468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 3 - 81
Target Start/End: Complemental strand, 43081914 - 43081836
Alignment:
Q  3 tttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcactatccaaatttcttt 81  Q
    ||||||||| |||| ||||||||||| ||| ||||| | ||||||||||| || |||||||||||| | ||||||||||    
T  43081914 tttctctcttatacacacattgttcttctactttctctctctattgctttaatatttgtgtcactacctaaatttcttt 43081836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 3 - 81
Target Start/End: Original strand, 47448873 - 47448951
Alignment:
Q  3 tttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcactatccaaatttcttt 81  Q
    |||||||||||||||||||||||  |  || ||||||| |||||||||||| |||||||| ||||| | ||||||||||    
T  47448873 tttctctctcatactcacattgtgtttttactttctttctctattgctttggtttttgtgccactacctaaatttcttt 47448951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 81
Target Start/End: Complemental strand, 32777731 - 32777653
Alignment:
Q  3 tttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcactatccaaatttcttt 81  Q
    ||||||||||||||||||| ||| || ||| ||||| | || ||| |||||||||||||| ||||| | ||||||||||    
T  32777731 tttctctctcatactcacactgtccttctactttctctctccattactttgatttttgtgccactacctaaatttcttt 32777653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 81
Target Start/End: Original strand, 34978343 - 34978421
Alignment:
Q  3 tttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcactatccaaatttcttt 81  Q
    ||||||||||||||||||||| | ||  || ||||| | |||||||||||| |||||||| ||||| | ||||||||||    
T  34978343 tttctctctcatactcacattatccttttactttctctctctattgctttgttttttgtgccactacctaaatttcttt 34978421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 3 - 81
Target Start/End: Original strand, 13152639 - 13152718
Alignment:
Q  3 tttctctctcatactcacattgttctcctattttctttttctattgc-tttgatttttgtgtcactatccaaatttcttt 81  Q
    ||||||||||||||||||||| | ||  || ||||| | |||||||| ||||||||||||| ||||| | ||||||||||    
T  13152639 tttctctctcatactcacattatccttttactttctctctctattgcttttgatttttgtgccactacctaaatttcttt 13152718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 81
Target Start/End: Original strand, 33057426 - 33057504
Alignment:
Q  3 tttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcactatccaaatttcttt 81  Q
    ||||| |||| |||||| |||||  ||||| ||||| | |||||||||||||||||||||| | || | ||||||||||    
T  33057426 tttctttctcttactcatattgtcttcctactttctctctctattgctttgatttttgtgttattacctaaatttcttt 33057504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 65
Target Start/End: Complemental strand, 35098728 - 35098666
Alignment:
Q  3 tttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtca 65  Q
    ||||||| ||||||||||||| |  |  || ||||| ||||||||||||||||||||||||||    
T  35098728 tttctctttcatactcacattctatttttactttctctttctattgctttgatttttgtgtca 35098666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 46880947 - 46881005
Alignment:
Q  1 attttctctctcatactcacattgttctcctattttctttttctattgctttgattttt 59  Q
    ||||||||||||||||||| |||||||| ||| | ||| | |||||| |||||||||||    
T  46880947 attttctctctcatactcatattgttcttctactatctctctctattactttgattttt 46881005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 81
Target Start/End: Complemental strand, 29723951 - 29723871
Alignment:
Q  3 tttctctctcatactcacattgttctcctattt--tctttttctattgctttgatttttgtgtcactatccaaatttcttt 81  Q
    ||||||||||||||||||||  |  | ||||||  ||| | ||||||||||||||||||||  ||||||| ||||||||||    
T  29723951 tttctctctcatactcacatgatcattctattttctctctctctattgctttgatttttgtaccactatctaaatttcttt 29723871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 40854681 - 40854620
Alignment:
Q  1 attttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtg 62  Q
    ||||||||||||||||||||||| |  |  || ||||| | |||||||||||||||||||||    
T  40854681 attttctctctcatactcacattatatttttactttctctctctattgctttgatttttgtg 40854620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 44
Target Start/End: Complemental strand, 41985125 - 41985084
Alignment:
Q  3 tttctctctcatactcacattgttctcctattttctttttct 44  Q
    ||||||||||||||||||||| ||||| |||||||| |||||    
T  41985125 tttctctctcatactcacattattctcttattttctctttct 41985084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 65
Target Start/End: Original strand, 47684209 - 47684270
Alignment:
Q  4 ttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtca 65  Q
    |||||||||||| ||| ||||||||  || ||||||| ||||||  ||||||||||||||||    
T  47684209 ttctctctcatattcatattgttcttatactttctttctctattattttgatttttgtgtca 47684270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 77
Target Start/End: Complemental strand, 15325646 - 15325590
Alignment:
Q  21 attgttctcctattttctttttctattgctttgatttttgtgtcactatccaaattt 77  Q
    |||||||| ||| ||||| | ||||||| ||| ||||||||||||||||| ||||||    
T  15325646 attgttcttctactttctctctctattgtttttatttttgtgtcactatctaaattt 15325590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 37352155 - 37352231
Alignment:
Q  1 attttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcactatccaaattt 77  Q
    ||||| ||||||||| ||||||||  || ||| ||||| | |||| || ||||||||||||||||||| | ||||||    
T  37352155 attttttctctcatattcacattgcccttctactttctctctctactgttttgatttttgtgtcactacctaaattt 37352231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 90; Significance: 2e-43; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 133 - 299
Target Start/End: Complemental strand, 33918858 - 33918689
Alignment:
Q  133 tcttttattatttattgtcaactccttccttctctaaaaaacacgaaaccc----aaatttcttcaccatctctctatcccaaggattcaagctctgacg 228  Q
    |||||||||||||||||||  |||||||| ||||| |||| || ||| |||    ||||||||||||||| ||||||||| | ||||||||||||| |||    
T  33918858 tcttttattatttattgtcccctccttccatctctgaaaa-caagaaccccttgaaaatttcttcaccatatctctatccaatggattcaagctctaacg 33918760  T
Q  229 aagtagtccttgatctctcacccatgataaaagtctacaaagacggtcacatagaaagactctcaggatcc 299  Q
    |||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||  |||||||    
T  33918759 aagtagtccttgatctctcacccatgattaaaatctacaaagacggtcacatagaaagactcataggatcc 33918689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 41262371 - 41262291
Alignment:
Q  1 attttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcactatccaaatttcttt 81  Q
    |||||||||||| |||||||||||| || ||| ||||||| ||||||||||||||||||||| || |||| ||||||||||    
T  41262371 attttctctctcttactcacattgtccttctactttctttctctattgctttgatttttgtgccattatctaaatttcttt 41262291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 3 - 81
Target Start/End: Original strand, 5386419 - 5386497
Alignment:
Q  3 tttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcactatccaaatttcttt 81  Q
    ||||||||||||||||||||| ||||  || ||||| | |||||||||||||||||||||| |||||| ||||||||||    
T  5386419 tttctctctcatactcacattattcttttactttctctctctattgctttgatttttgtgttactatctaaatttcttt 5386497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 3 - 81
Target Start/End: Complemental strand, 29227267 - 29227189
Alignment:
Q  3 tttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcactatccaaatttcttt 81  Q
    |||||||||||||| ||||||||||| ||| ||||| | |||||||||||||| |||||||||||| | ||||||||||    
T  29227267 tttctctctcatacacacattgttcttctactttctctctctattgctttgatatttgtgtcactacctaaatttcttt 29227189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 52204895 - 52204975
Alignment:
Q  1 attttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcactatccaaatttcttt 81  Q
    ||||||||| |||||||||||||||| | ||| ||||| | |||||||||||||||||||||||||||   ||||||||||    
T  52204895 attttctctttcatactcacattgtttttctactttctctctctattgctttgatttttgtgtcactacttaaatttcttt 52204975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 3 - 81
Target Start/End: Original strand, 51255793 - 51255871
Alignment:
Q  3 tttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcactatccaaatttcttt 81  Q
    ||||||||||||||||||||  || | ||| ||||| | ||||||||||||||||||||| ||||||| ||||||||||    
T  51255793 tttctctctcatactcacatgattattctactttctctctctattgctttgatttttgtgccactatctaaatttcttt 51255871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 26600225 - 26600156
Alignment:
Q  1 attttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcactatc 70  Q
    |||||||||||||||| ||||||||||| ||| ||||||| ||||||||||| ||| ||||| |||||||    
T  26600225 attttctctctcatacacacattgttcttctactttctttctctattgcttttattattgtgccactatc 26600156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 3 - 81
Target Start/End: Original strand, 38519840 - 38519918
Alignment:
Q  3 tttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcactatccaaatttcttt 81  Q
    ||||||||||||||||||||  || | ||| ||||| | ||||||||||||||||||||| ||||||  ||||||||||    
T  38519840 tttctctctcatactcacatgattattctactttctctctctattgctttgatttttgtgccactatttaaatttcttt 38519918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 3 - 81
Target Start/End: Original strand, 39158152 - 39158230
Alignment:
Q  3 tttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcactatccaaatttcttt 81  Q
    ||||||||||||||||||||| |||| ||| ||||| ||||||||| |||| |||||||| | ||| | ||||||||||    
T  39158152 tttctctctcatactcacattattcttctactttctctttctattgttttggtttttgtgccgctacctaaatttcttt 39158230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 34 - 81
Target Start/End: Original strand, 18316015 - 18316062
Alignment:
Q  34 tttctttttctattgctttgatttttgtgtcactatccaaatttcttt 81  Q
    ||||| ||||||||||||||||||||||||||||| | ||||||||||    
T  18316015 tttctctttctattgctttgatttttgtgtcactacctaaatttcttt 18316062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 81
Target Start/End: Complemental strand, 5932788 - 5932710
Alignment:
Q  3 tttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcactatccaaatttcttt 81  Q
    ||||||||||||||||||||| | ||  || | ||| | ||||||| ||||||||||||||||||| | ||||||||||    
T  5932788 tttctctctcatactcacattatccttttagtgtctctatctattgttttgatttttgtgtcactacctaaatttcttt 5932710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 40 - 82
Target Start/End: Complemental strand, 22813709 - 22813667
Alignment:
Q  40 tttctattgctttgatttttgtgtcactatccaaatttcttta 82  Q
    ||||||||||||||||||||||||||||| | |||||||||||    
T  22813709 tttctattgctttgatttttgtgtcactacctaaatttcttta 22813667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 81
Target Start/End: Complemental strand, 36130373 - 36130299
Alignment:
Q  7 tctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcactatccaaatttcttt 81  Q
    |||||||||| ||||||||||| ||| ||| | | |||||||| ||||||||||||||| || | ||||||||||    
T  36130373 tctctcatacacacattgttcttctactttttctctctattgccttgatttttgtgtcattacctaaatttcttt 36130299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 40348838 - 40348920
Alignment:
Q  1 attttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcactatccaaatttctttaa 83  Q
    ||||||||||||||||||||||| |  |  || ||||| | |||||||||||| ||||||||||||||||  | |||||||||    
T  40348838 attttctctctcatactcacattatctttttactttctctctctattgctttggtttttgtgtcactatctcattttctttaa 40348920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 55266070 - 55266144
Alignment:
Q  1 attttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcactatccaaat 75  Q
    ||||||||||||||| ||||||||| ||  || ||||| | | |||| |||||||||||||||||||||| ||||    
T  55266070 attttctctctcatattcacattgtccttttactttctctctttattactttgatttttgtgtcactatctaaat 55266144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 31574966 - 31574906
Alignment:
Q  1 attttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgt 61  Q
    ||||||||||||||||||||||| |  |  |||||||| | ||||||||||||||||||||    
T  31574966 attttctctctcatactcacattatatttttattttctctctctattgctttgatttttgt 31574906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 37297093 - 37297160
Alignment:
Q  1 attttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcacta 68  Q
    ||||||||||||||||||||||| |  |  || ||||| | |||||||||||| ||||||||||||||    
T  37297093 attttctctctcatactcacattatctttttactttctctctctattgctttggtttttgtgtcacta 37297160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 39440528 - 39440595
Alignment:
Q  1 attttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcacta 68  Q
    ||||||||| ||||||||||||| |  |  || ||||| | |||||||||||||||||||||||||||    
T  39440528 attttctctttcatactcacattttcattttactttctctctctattgctttgatttttgtgtcacta 39440595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 3 - 82
Target Start/End: Original strand, 51577661 - 51577740
Alignment:
Q  3 tttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcactatccaaatttcttta 82  Q
    ||||||||||||||||| ||| |  |  || ||||| | ||||||||||||||||||||| ||||| | |||||||||||    
T  51577661 tttctctctcatactcatattatcattttactttctctctctattgctttgatttttgtgccactacctaaatttcttta 51577740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 81
Target Start/End: Complemental strand, 149509 - 149431
Alignment:
Q  3 tttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcactatccaaatttcttt 81  Q
    ||||||||||||||||||||| |  | | | ||||| | |||||||||||  |||||||||||||| | ||||||||||    
T  149509 tttctctctcatactcacattatgtttcaactttctctctctattgctttagtttttgtgtcactacctaaatttcttt 149431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 65
Target Start/End: Original strand, 9393840 - 9393874
Alignment:
Q  31 tattttctttttctattgctttgatttttgtgtca 65  Q
    |||||||| ||||||||||||||||||||||||||    
T  9393840 tattttctctttctattgctttgatttttgtgtca 9393874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 68
Target Start/End: Original strand, 43175030 - 43175095
Alignment:
Q  3 tttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcacta 68  Q
    ||||||||||||||||||||| || |  || ||||| | ||||| |||||| ||||||||||||||    
T  43175030 tttctctctcatactcacattatttttttactttctctctctatggctttggtttttgtgtcacta 43175095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 68
Target Start/End: Original strand, 46634150 - 46634211
Alignment:
Q  7 tctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcacta 68  Q
    ||||||||||||||||| |  |  || ||||| |||||||| ||||||||||||||||||||    
T  46634150 tctctcatactcacattatctttttactttctctttctattactttgatttttgtgtcacta 46634211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 36177950 - 36178010
Alignment:
Q  1 attttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgt 61  Q
    ||||||||||||||||||||||| |  |  || ||||||| |||||||||||| |||||||    
T  36177950 attttctctctcatactcacattatctttttactttctttctctattgctttggtttttgt 36178010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 38381103 - 38381043
Alignment:
Q  1 attttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgt 61  Q
    ||||||||||||||||| ||||| |  |  |||||||| | ||||||||||||||||||||    
T  38381103 attttctctctcatacttacattatgtttttattttctctctctattgctttgatttttgt 38381043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0618 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0618
Description:

Target: scaffold0618; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 8979 - 8899
Alignment:
Q  1 attttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcactatccaaatttcttt 81  Q
    |||||||||||||||| ||||||||||| ||| ||||| | ||||||||||||||||||||||||||| | ||||||||||    
T  8979 attttctctctcatacacacattgttcttctactttctctctctattgctttgatttttgtgtcactacctaaatttcttt 8899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 44090931 - 44091011
Alignment:
Q  1 attttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcactatccaaatttcttt 81  Q
    |||||||||||||||| ||||||||||| ||| ||||| | ||||||||||||||||||||||||||| | ||||||||||    
T  44090931 attttctctctcatacacacattgttcttctactttctctctctattgctttgatttttgtgtcactacctaaatttcttt 44091011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 3 - 81
Target Start/End: Original strand, 44061764 - 44061842
Alignment:
Q  3 tttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcactatccaaatttcttt 81  Q
    ||||||||||||||||||||| |  |  || ||||| ||||| ||||||||||||||||||||||||| ||||||||||    
T  44061764 tttctctctcatactcacattatcattttactttctctttctgttgctttgatttttgtgtcactatctaaatttcttt 44061842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 34435763 - 34435683
Alignment:
Q  1 attttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcactatccaaatttcttt 81  Q
    |||||||||||||||| ||||||||||| ||| ||||  | |||||||||||||| |||||| ||||| | ||||||||||    
T  34435763 attttctctctcatacacacattgttcttctactttcgctctctattgctttgatatttgtgccactacctaaatttcttt 34435683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 3 - 81
Target Start/End: Original strand, 1068653 - 1068731
Alignment:
Q  3 tttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcactatccaaatttcttt 81  Q
    |||||||||||||| ||||||||||| ||| ||||| | |||||||||||||| |||||  ||||| | ||||||||||    
T  1068653 tttctctctcatacacacattgttcttctactttctctctctattgctttgatatttgtaacactacctaaatttcttt 1068731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 3 - 81
Target Start/End: Original strand, 9629610 - 9629688
Alignment:
Q  3 tttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcactatccaaatttcttt 81  Q
    |||||||||||| || | |||||||| ||| ||| ||||||||||| |||||||||||||  | |||||||||||||||    
T  9629610 tttctctctcatgcttatattgttcttctactttttttttctattgttttgatttttgtgcaattatccaaatttcttt 9629688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 3 - 81
Target Start/End: Original strand, 26026943 - 26027021
Alignment:
Q  3 tttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcactatccaaatttcttt 81  Q
    ||||| ||||||||||||||| |  |  |||||||| ||||||||||||| |||||||| |||||||| ||||||||||    
T  26026943 tttctttctcatactcacattatcattttattttctctttctattgctttaatttttgtatcactatctaaatttcttt 26027021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 3 - 81
Target Start/End: Complemental strand, 33451587 - 33451511
Alignment:
Q  3 tttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcactatccaaatttcttt 81  Q
    ||||||||||||||||||||||| || ||| ||||| | ||||||||||||||||||||| ||||| || |||||||||    
T  33451587 tttctctctcatactcacattgt-cttctactttctctctctattgctttgatttttgtgccacta-cctaatttcttt 33451511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 5601013 - 5600933
Alignment:
Q  1 attttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcactatccaaatttcttt 81  Q
    ||||| ||||||||||||||||  || | ||| ||||| | | ||||||||||||||||||||||| ||| ||||||||||    
T  5601013 attttttctctcatactcacatgattattctactttctctctttattgctttgatttttgtgtcaccatctaaatttcttt 5600933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 5639607 - 5639687
Alignment:
Q  1 attttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcactatccaaatttcttt 81  Q
    ||||| ||||||||||||||||  || | ||| ||||| | | ||||||||||||||||||||||| ||| ||||||||||    
T  5639607 attttttctctcatactcacatgattattctactttctctctttattgctttgatttttgtgtcaccatctaaatttcttt 5639687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 82
Target Start/End: Original strand, 9630170 - 9630249
Alignment:
Q  3 tttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcactatccaaatttcttta 82  Q
    ||||||| ||||||| | ||||| || ||||||||||| |||||| ||||||||||| | |||||| | |||||||||||    
T  9630170 tttctctttcatacttatattgtccttctattttctttctctatttctttgatttttatatcactacctaaatttcttta 9630249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 81
Target Start/End: Complemental strand, 15716996 - 15716922
Alignment:
Q  7 tctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcactatccaaatttcttt 81  Q
    ||||||||||  |||||||||| ||| ||||| | |||||||||||||| ||||| |||||| | ||||||||||    
T  15716996 tctctcatacatacattgttcttctactttctctctctattgctttgatatttgtatcactacctaaatttcttt 15716922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 81
Target Start/End: Complemental strand, 25987807 - 25987733
Alignment:
Q  7 tctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcactatccaaatttcttt 81  Q
    ||||||||||||||||| |  | ||| ||| | | ||||||||||||||||||||||||||| | ||||||||||    
T  25987807 tctctcatactcacattatcattctactttatctctctattgctttgatttttgtgtcactacctaaatttcttt 25987733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 81
Target Start/End: Original strand, 37172112 - 37172185
Alignment:
Q  8 ctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcactatccaaatttcttt 81  Q
    |||||||||| ||| ||| || ||||||||| |||| ||| ||||||||||||||||| || | ||||||||||    
T  37172112 ctctcatacttacactgtccttctattttctctttccattactttgatttttgtgtcattacctaaatttcttt 37172185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 18 - 81
Target Start/End: Original strand, 12241134 - 12241197
Alignment:
Q  18 cacattgttctcctattttctttttctattgctttgatttttgtgtcactatccaaatttcttt 81  Q
    ||||||||||| |||  || | | |||||||||||||||||| |||||||||| ||||||||||    
T  12241134 cacattgttcttctacattatctctctattgctttgatttttatgtcactatctaaatttcttt 12241197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 32501223 - 32501156
Alignment:
Q  1 attttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcacta 68  Q
    ||||||||||||||||||||||| || |  ||  |||| | |||||| ||||||||||||||||||||    
T  32501223 attttctctctcatactcacattatttttttacgttctctctctattactttgatttttgtgtcacta 32501156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 3 - 70
Target Start/End: Original strand, 43397827 - 43397894
Alignment:
Q  3 tttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcactatc 70  Q
    ||||||||||||||||||||| || |  || ||||| |||||||| ||||| |||||||| |||||||    
T  43397827 tttctctctcatactcacattatttttttactttctctttctattactttggtttttgtgccactatc 43397894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 81
Target Start/End: Complemental strand, 33107891 - 33107813
Alignment:
Q  3 tttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcactatccaaatttcttt 81  Q
    |||||| ||||||| ||||||||||| ||| ||||| | ||| |||||||||| ||||||  |||| | ||||||||||    
T  33107891 tttctccctcatacacacattgttcttctactttctctctctgttgctttgatatttgtgcaactacctaaatttcttt 33107813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 45406010 - 45405948
Alignment:
Q  1 attttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgt 63  Q
    ||||| ||||||||||||||||||  || ||| ||||| | ||||||| ||||||||||||||    
T  45406010 attttttctctcatactcacattgcccttctactttctctctctattgttttgatttttgtgt 45405948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 62
Target Start/End: Complemental strand, 3413215 - 3413158
Alignment:
Q  5 tctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtg 62  Q
    ||||||||||||||||||| |  |  || |||||||||||||||||||| ||||||||    
T  3413215 tctctctcatactcacattatatttttactttctttttctattgctttggtttttgtg 3413158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 44825487 - 44825547
Alignment:
Q  1 attttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgt 61  Q
    ||||| ||||||||||||||||| ||   ||| ||||| | ||||||||||||||||||||    
T  44825487 attttatctctcatactcacattatttatctactttctctctctattgctttgatttttgt 44825547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0201 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: scaffold0201
Description:

Target: scaffold0201; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 3 - 82
Target Start/End: Original strand, 8519 - 8598
Alignment:
Q  3 tttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcactatccaaatttcttta 82  Q
    ||||||||||||||||||||||| || ||| ||||| ||||||||||||||||||||||||||| | | |||||||||||    
T  8519 tttctctctcatactcacattgtccttctactttctctttctattgctttgatttttgtgtcaccaactaaatttcttta 8598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 5e-19; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 32872924 - 32872844
Alignment:
Q  1 attttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcactatccaaatttcttt 81  Q
    ||||||| | ||||||||||||||||||| || ||||||||||||||||||||| |||||||| |||| | ||||||||||    
T  32872924 attttctttttcatactcacattgttctcatactttctttttctattgctttgacttttgtgttactacctaaatttcttt 32872844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 3 - 70
Target Start/End: Original strand, 11954478 - 11954545
Alignment:
Q  3 tttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcactatc 70  Q
    |||||||||||||||||||||||| |  |||||||||| |||||| |||||||||||||| |||||||    
T  11954478 tttctctctcatactcacattgttattttattttctttctctattactttgatttttgtgccactatc 11954545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 17097828 - 17097748
Alignment:
Q  1 attttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcactatccaaatttcttt 81  Q
    ||||||| |||||||||||||||||  | ||| ||||| |||||||| |||||||||||||||||||| | || |||||||    
T  17097828 attttctatctcatactcacattgtcattctactttctctttctattactttgatttttgtgtcactacctaattttcttt 17097748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 3 - 81
Target Start/End: Original strand, 611911 - 611989
Alignment:
Q  3 tttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcactatccaaatttcttt 81  Q
    ||||||||||||||||||||| |  |  |||||||| | |||| |||||||||||||||||||||| | ||||||||||    
T  611911 tttctctctcatactcacattatcattttattttctctctctactgctttgatttttgtgtcactacctaaatttcttt 611989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 81
Target Start/End: Complemental strand, 13089806 - 13089728
Alignment:
Q  3 tttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcactatccaaatttcttt 81  Q
    ||||||| ||||||||||||| |  | ||| ||| | | ||||||||||||||||||||||||||| | ||||||||||    
T  13089806 tttctctttcatactcacattatcattctactttatctctctattgctttgatttttgtgtcactacctaaatttcttt 13089728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 81
Target Start/End: Complemental strand, 42446315 - 42446237
Alignment:
Q  3 tttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcactatccaaatttcttt 81  Q
    |||||||||| |||||||||||| || ||| ||| | | ||||||||||||||||||||| || || | ||||||||||    
T  42446315 tttctctctcttactcacattgtccttctactttttctctctattgctttgatttttgtgccattacctaaatttcttt 42446237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 4 - 65
Target Start/End: Complemental strand, 16972123 - 16972062
Alignment:
Q  4 ttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtca 65  Q
    |||||||||||| | |||||||||| ||| ||||| | |||||| |||||||||||||||||    
T  16972123 ttctctctcatatttacattgttcttctactttctctctctattactttgatttttgtgtca 16972062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 21 - 82
Target Start/End: Complemental strand, 32478502 - 32478441
Alignment:
Q  21 attgttctcctattttctttttctattgctttgatttttgtgtcactatccaaatttcttta 82  Q
    |||| ||| ||||||||| | |||||||||||||||||| |||||||| | |||||||||||    
T  32478502 attgatcttctattttctctctctattgctttgatttttatgtcactacctaaatttcttta 32478441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 60
Target Start/End: Original strand, 39195764 - 39195821
Alignment:
Q  3 tttctctctcatactcacattgttctcctattttctttttctattgctttgatttttg 60  Q
    ||||||||||||||  |||||||||| ||| ||||| | |||||||||||||||||||    
T  39195764 tttctctctcatacagacattgttcttctactttctctctctattgctttgatttttg 39195821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 19982012 - 19981936
Alignment:
Q  1 attttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcactatccaaattt 77  Q
    ||||| |||||||||||||   ||| || ||| ||||| |||||||| |||||||||||||| ||||||| ||||||    
T  19982012 attttttctctcatactcatggtgtccttctactttctctttctattactttgatttttgtgccactatctaaattt 19981936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 81
Target Start/End: Original strand, 14532551 - 14532629
Alignment:
Q  3 tttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcactatccaaatttcttt 81  Q
    ||||||||||||||||||||| |  |  || ||||||| |||||||||||| || |||||||| ||| || ||||||||    
T  14532551 tttctctctcatactcacattttgtttttactttctttctctattgctttggttcttgtgtcaatattcatatttcttt 14532629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 61
Target Start/End: Original strand, 21210865 - 21210923
Alignment:
Q  3 tttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgt 61  Q
    |||||||||||||| |||||| |||| ||| ||||| | ||||||||||| ||||||||    
T  21210865 tttctctctcatacacacattattcttctactttctctctctattgctttaatttttgt 21210923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 68
Target Start/End: Complemental strand, 19522028 - 19521963
Alignment:
Q  3 tttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcacta 68  Q
    ||||||| ||||||||||||| |  |  || ||||| | |||||||||||||||||||||||||||    
T  19522028 tttctctttcatactcacattatctttttactttctctctctattgctttgatttttgtgtcacta 19521963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 62
Target Start/End: Original strand, 29463044 - 29463101
Alignment:
Q  5 tctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtg 62  Q
    ||||||||||||||||||| |  |  |||||||| | |||||||||||||||||||||    
T  29463044 tctctctcatactcacattttgtttttattttctctctctattgctttgatttttgtg 29463101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 68
Target Start/End: Original strand, 35646429 - 35646494
Alignment:
Q  3 tttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcacta 68  Q
    ||||||||||||||||||||| || |  || ||||| | | |||||||||| ||||||||||||||    
T  35646429 tttctctctcatactcacattatttttttactttctctctatattgctttggtttttgtgtcacta 35646494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 68
Target Start/End: Original strand, 36738994 - 36739059
Alignment:
Q  3 tttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcacta 68  Q
    ||||||||||||||||||||| |  |  || ||||| | |||||||||||| ||||||||||||||    
T  36738994 tttctctctcatactcacattatctttttactttctctctctattgctttggtttttgtgtcacta 36739059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 5e-19; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 3 - 79
Target Start/End: Original strand, 11965840 - 11965916
Alignment:
Q  3 tttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcactatccaaatttct 79  Q
    |||||||||||||| ||||||||||| ||| ||||| | ||||||||||||||||||||| ||||||| ||||||||    
T  11965840 tttctctctcatacacacattgttcttctactttctctctctattgctttgatttttgtgccactatctaaatttct 11965916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 3 - 81
Target Start/End: Complemental strand, 37316839 - 37316761
Alignment:
Q  3 tttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcactatccaaatttcttt 81  Q
    |||||||||||||| ||||||||||| ||| ||||| | |||||||||||||| |||||||||||| | ||||||||||    
T  37316839 tttctctctcatacacacattgttcttctactttctctctctattgctttgatatttgtgtcactacctaaatttcttt 37316761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 4 - 75
Target Start/End: Original strand, 30831802 - 30831873
Alignment:
Q  4 ttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcactatccaaat 75  Q
    ||||||||||||||||||||||||| ||| ||||| | |||||| |||||||||||||| ||||||| ||||    
T  30831802 ttctctctcatactcacattgttcttctactttctctctctattactttgatttttgtgccactatctaaat 30831873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 26481116 - 26481042
Alignment:
Q  1 attttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcactatccaaat 75  Q
    ||||||| |||||||||||| ||||| | ||| ||||||| |||||| |||||||||||||||||||||| ||||    
T  26481116 attttctttctcatactcacgttgtttttctactttctttctctattactttgatttttgtgtcactatctaaat 26481042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 37731226 - 37731146
Alignment:
Q  1 attttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcactatccaaatttcttt 81  Q
    |||||||||||||||| ||||||||||| ||| ||||  | |||||||||||||| |||||| ||||| | ||||||||||    
T  37731226 attttctctctcatacacacattgttcttctactttcgctctctattgctttgatatttgtgccactacctaaatttcttt 37731146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 7 - 81
Target Start/End: Original strand, 31578485 - 31578559
Alignment:
Q  7 tctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcactatccaaatttcttt 81  Q
    ||||||||||||||||| ||||  || ||| | | ||||||||||||||||||||||||||| | ||||||||||    
T  31578485 tctctcatactcacattattcttttactttatctctctattgctttgatttttgtgtcactacctaaatttcttt 31578559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 3 - 68
Target Start/End: Original strand, 6511297 - 6511362
Alignment:
Q  3 tttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcacta 68  Q
    ||||||||||||||||||||| |  |  |||||||| |||||||||||||| ||||||||||||||    
T  6511297 tttctctctcatactcacattatctttttattttctctttctattgctttggtttttgtgtcacta 6511362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 81
Target Start/End: Original strand, 19916702 - 19916780
Alignment:
Q  3 tttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcactatccaaatttcttt 81  Q
    |||||||||||||| ||||||||||| ||| ||||| | ||||||  |||||| |||||||||||  | ||||||||||    
T  19916702 tttctctctcatacacacattgttcttctactttctctctctattattttgatatttgtgtcactgcctaaatttcttt 19916780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 68
Target Start/End: Original strand, 43057111 - 43057176
Alignment:
Q  3 tttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcacta 68  Q
    ||||||||| ||||||||||| |  |  |||||| ||| |||||||||||||||||||||||||||    
T  43057111 tttctctcttatactcacattatcattttattttttttctctattgctttgatttttgtgtcacta 43057176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 68
Target Start/End: Original strand, 43487425 - 43487490
Alignment:
Q  3 tttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcacta 68  Q
    |||||||||||| |||||||| || |  || ||||||| |||||||||||| ||||||||||||||    
T  43487425 tttctctctcatgctcacattatttttttactttctttctctattgctttggtttttgtgtcacta 43487490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 5361838 - 5361902
Alignment:
Q  1 attttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtca 65  Q
    ||||||||||||||||||||||| |  |  || ||||||||||||||| |||| |||||||||||    
T  5361838 attttctctctcatactcacattatatttttactttctttttctattgttttggtttttgtgtca 5361902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 3 - 82
Target Start/End: Complemental strand, 32944528 - 32944449
Alignment:
Q  3 tttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcactatccaaatttcttta 82  Q
    ||||||||||||| ||||||| | ||  || ||| | | ||||||||||||||||||||||||||| | |||||| ||||    
T  32944528 tttctctctcatagtcacattctccttttactttttctctctattgctttgatttttgtgtcactacctaaattttttta 32944449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 42 - 81
Target Start/End: Complemental strand, 36587456 - 36587417
Alignment:
Q  42 tctattgctttgatttttgtgtcactatccaaatttcttt 81  Q
    ||||||||||||||||||||| ||||||| ||||||||||    
T  36587456 tctattgctttgatttttgtgccactatctaaatttcttt 36587417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 3 - 70
Target Start/End: Original strand, 37003657 - 37003724
Alignment:
Q  3 tttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcactatc 70  Q
    |||||||||||||||||||||||||| |||  |||| | | |||| ||||||||||| || |||||||    
T  37003657 tttctctctcatactcacattgttcttctacattctctctttattactttgatttttatgccactatc 37003724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 81
Target Start/End: Original strand, 8847534 - 8847612
Alignment:
Q  3 tttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcactatccaaatttcttt 81  Q
    ||||| |||||||| |||||| |||| ||| ||||| | |||||||||||||| ||| |  ||||||| ||||||||||    
T  8847534 tttctttctcatacacacattattcttctactttctctctctattgctttgatatttataccactatctaaatttcttt 8847612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 81
Target Start/End: Original strand, 18510722 - 18510800
Alignment:
Q  3 tttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcactatccaaatttcttt 81  Q
    |||| ||||| |||||||||||| || ||| ||||| | |||| | ||||||||||||||||| || | ||||||||||    
T  18510722 tttccctctcttactcacattgtccttctactttctctctctacttctttgatttttgtgtcattacctaaatttcttt 18510800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 68
Target Start/End: Original strand, 9207636 - 9207701
Alignment:
Q  3 tttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcacta 68  Q
    ||||||||||||||||||||| || |  || ||||| | |||||||||||| |||||||| |||||    
T  9207636 tttctctctcatactcacattatttttttactttctctctctattgctttggtttttgtgccacta 9207701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 68
Target Start/End: Complemental strand, 19109118 - 19109053
Alignment:
Q  3 tttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcacta 68  Q
    ||||||||||||||| ||||| |  |  |||||||| | ||||||||||||||||||||| |||||    
T  19109118 tttctctctcatacttacattatctttttattttctctctctattgctttgatttttgtgccacta 19109053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 44239081 - 44239161
Alignment:
Q  1 attttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcactatccaaatttcttt 81  Q
    ||||||||| | ||| ||||||| || |  |||||| | | ||||||||||||||||||||||||||  | ||||||||||    
T  44239081 attttctcttttatattcacattattattttattttatctctctattgctttgatttttgtgtcactgcctaaatttcttt 44239161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 3 - 82
Target Start/End: Complemental strand, 38878925 - 38878846
Alignment:
Q  3 tttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcactatccaaatttcttta 82  Q
    |||||||||||||  ||||||||||| ||| ||| | ||||||||||||||||||||||||||||| | |||||||||||    
T  38878925 tttctctctcatatacacattgttcttctactttttctttctattgctttgatttttgtgtcactacctaaatttcttta 38878846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 3 - 75
Target Start/End: Original strand, 4213119 - 4213191
Alignment:
Q  3 tttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcactatccaaat 75  Q
    |||||||||||||||||||||||||| |||  |||| | |||||| |||||||||||||||||||||| ||||    
T  4213119 tttctctctcatactcacattgttcttctaccttctctctctattactttgatttttgtgtcactatctaaat 4213191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 3 - 81
Target Start/End: Complemental strand, 40439864 - 40439786
Alignment:
Q  3 tttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcactatccaaatttcttt 81  Q
    |||||||||||||| ||||||||||| ||| ||||| | |||||||||||||| |||||| ||||| | ||||||||||    
T  40439864 tttctctctcatacacacattgttcttctactttctctctctattgctttgatatttgtgacactacctaaatttcttt 40439786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 3 - 81
Target Start/End: Complemental strand, 47642631 - 47642553
Alignment:
Q  3 tttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcactatccaaatttcttt 81  Q
    ||||||||||||||||||||| |  |  || ||||| ||||||||||||| ||||||||||||||||| ||||||||||    
T  47642631 tttctctctcatactcacattatcatattactttctctttctattgctttaatttttgtgtcactatctaaatttcttt 47642553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 3 - 81
Target Start/End: Complemental strand, 48983692 - 48983614
Alignment:
Q  3 tttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcactatccaaatttcttt 81  Q
    ||||||||||||||||||||  || | ||| ||||| ||||||||||||||||||||||| || |||| ||||||||||    
T  48983692 tttctctctcatactcacatgattattctactttctctttctattgctttgatttttgtgccattatctaaatttcttt 48983614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 3 - 81
Target Start/End: Complemental strand, 17082767 - 17082689
Alignment:
Q  3 tttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcactatccaaatttcttt 81  Q
    |||||||||||||| |||||| |||| ||||||||| | |||||| ||||||| |||||| ||||| | ||||||||||    
T  17082767 tttctctctcatacacacattattcttctattttctctctctattactttgatatttgtgccactacctaaatttcttt 17082689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 3 - 81
Target Start/End: Original strand, 48858870 - 48858948
Alignment:
Q  3 tttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcactatccaaatttcttt 81  Q
    ||||||||||||||||||||| |  |  || || || | ||||||||||||||||||||||||||||| ||||||||||    
T  48858870 tttctctctcatactcacattatcattttacttcctctctctattgctttgatttttgtgtcactatctaaatttcttt 48858948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 81
Target Start/End: Original strand, 4857957 - 4858035
Alignment:
Q  3 tttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcactatccaaatttcttt 81  Q
    |||||||||||| | ||||||||||| ||| ||||| | |||||||||||||| |||||| |||||   ||||||||||    
T  4857957 tttctctctcatgcacacattgttcttctactttctctctctattgctttgatatttgtgccactacttaaatttcttt 4858035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 81
Target Start/End: Complemental strand, 7919086 - 7919008
Alignment:
Q  3 tttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcactatccaaatttcttt 81  Q
    ||||||||||||||||| ||||| || ||| ||| | | |||||| |||||||||||||| ||||| | ||||||||||    
T  7919086 tttctctctcatactcatattgtccttctactttatctctctattactttgatttttgtgccactacctaaatttcttt 7919008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 68
Target Start/End: Original strand, 35369746 - 35369811
Alignment:
Q  3 tttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcacta 68  Q
    ||||| |||||||||||||||||  |  || ||||| | |||||||||||||||||||||||||||    
T  35369746 tttctatctcatactcacattgtctttttactttctctctctattgctttgatttttgtgtcacta 35369811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 68
Target Start/End: Original strand, 649815 - 649880
Alignment:
Q  3 tttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcacta 68  Q
    ||||||||||||||||||||| |  |  || ||||| | |||||||||||| ||||||||||||||    
T  649815 tttctctctcatactcacattatctttttactttctctctctattgctttggtttttgtgtcacta 649880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 64
Target Start/End: Original strand, 12657268 - 12657329
Alignment:
Q  3 tttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtc 64  Q
    ||||||||||||||||||||| |  |  || ||||| |||||||||||||| ||||||||||    
T  12657268 tttctctctcatactcacattatctttttactttctctttctattgctttggtttttgtgtc 12657329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 68
Target Start/End: Original strand, 33100854 - 33100919
Alignment:
Q  3 tttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcacta 68  Q
    ||||||||||||||||||||| |  |  || ||||| | ||||||| |||||||||||||||||||    
T  33100854 tttctctctcatactcacattatctttttactttctctctctattgttttgatttttgtgtcacta 33100919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 68
Target Start/End: Complemental strand, 37275058 - 37274993
Alignment:
Q  3 tttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcacta 68  Q
    ||||||| ||||||||||||| |  |  || ||||||| |||||||||||| ||||||||||||||    
T  37275058 tttctctttcatactcacattatctttttactttctttctctattgctttggtttttgtgtcacta 37274993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 46 - 82
Target Start/End: Complemental strand, 24806205 - 24806169
Alignment:
Q  46 ttgctttgatttttgtgtcactatccaaatttcttta 82  Q
    |||||||||||||||||||||| || |||||||||||    
T  24806205 ttgctttgatttttgtgtcactgtctaaatttcttta 24806169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 8e-18; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 3 - 81
Target Start/End: Complemental strand, 34307565 - 34307487
Alignment:
Q  3 tttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcactatccaaatttcttt 81  Q
    ||||||| |||||||||||||||||| ||| ||||| |||||||||||||| ||||||| |||||| | ||||||||||    
T  34307565 tttctctttcatactcacattgttcttctactttctctttctattgctttggtttttgtatcactacctaaatttcttt 34307487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 33472445 - 33472365
Alignment:
Q  1 attttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcactatccaaatttcttt 81  Q
    ||||||||||||||| ||| ||||||||  || |||||||||||||| ||||||||||||| |||||||| |||| |||||    
T  33472445 attttctctctcatattcatattgttcttttactttctttttctattactttgatttttgtatcactatctaaatctcttt 33472365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 70
Target Start/End: Original strand, 288772 - 288839
Alignment:
Q  3 tttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcactatc 70  Q
    ||||||||||||||||||||| || |  || ||||| | |||||||||||| ||||||||||||||||    
T  288772 tttctctctcatactcacattatttttttactttctctctctattgctttggtttttgtgtcactatc 288839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 34 - 81
Target Start/End: Complemental strand, 4494230 - 4494183
Alignment:
Q  34 tttctttttctattgctttgatttttgtgtcactatccaaatttcttt 81  Q
    ||||| ||||||||||||||||||||||||||||| | ||||||||||    
T  4494230 tttctctttctattgctttgatttttgtgtcactacctaaatttcttt 4494183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 38671662 - 38671736
Alignment:
Q  1 attttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcactatccaaat 75  Q
    |||||||||||| |||||||||||||||  || ||| ||| |||||| |||| |||||||| |||||||| ||||    
T  38671662 attttctctctcgtactcacattgttcttatactttatttctctattactttaatttttgtatcactatctaaat 38671736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 80
Target Start/End: Original strand, 31104711 - 31104788
Alignment:
Q  3 tttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcactatccaaatttctt 80  Q
    ||||||| ||||| | ||||||| || ||| ||||| | ||||||| ||||||||||||||||||| | |||||||||    
T  31104711 tttctctttcatattaacattgtccttctactttctctctctattgttttgatttttgtgtcactacctaaatttctt 31104788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 41443217 - 41443156
Alignment:
Q  1 attttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtg 62  Q
    ||||||||||||||||||||||| ||||  || ||||| | ||||||| |||||||||||||    
T  41443217 attttctctctcatactcacattattcttttactttctctctctattgttttgatttttgtg 41443156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 6178452 - 6178388
Alignment:
Q  1 attttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtca 65  Q
    ||||||||||||||||||||||| |  |  || ||||| | ||||||||||||||||||||||||    
T  6178452 attttctctctcatactcacattatgtttttactttctctctctattgctttgatttttgtgtca 6178388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 70
Target Start/End: Complemental strand, 37503741 - 37503705
Alignment:
Q  34 tttctttttctattgctttgatttttgtgtcactatc 70  Q
    |||||||||||||||||||||||||||||||| ||||    
T  37503741 tttctttttctattgctttgatttttgtgtcaatatc 37503705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 3 - 70
Target Start/End: Complemental strand, 39714061 - 39713994
Alignment:
Q  3 tttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcactatc 70  Q
    |||||| || ||| ||||||||||||  || ||||| | |||||||||||||||||||||| ||||||    
T  39714061 tttctcccttataatcacattgttcttatactttctctctctattgctttgatttttgtgttactatc 39713994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 69
Target Start/End: Complemental strand, 27168706 - 27168640
Alignment:
Q  3 tttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcactat 69  Q
    ||||||||||||||||| ||| |||| ||| || || | |||||| |||||||||||||| ||||||    
T  27168706 tttctctctcatactcatattattcttctacttcctctctctattactttgatttttgtgccactat 27168640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 68
Target Start/End: Original strand, 5114124 - 5114189
Alignment:
Q  3 tttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcacta 68  Q
    ||||||||||| ||||||||| |  |  || ||||| | |||||||||||||||||||||||||||    
T  5114124 tttctctctcacactcacattatctttttactttctctctctattgctttgatttttgtgtcacta 5114189  T

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Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 68
Target Start/End: Original strand, 5244275 - 5244340
Alignment:
Q  3 tttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcacta 68  Q
    ||||||||||||||||||||| || |  || ||||| | |||||||||||| |||||||| |||||    
T  5244275 tttctctctcatactcacattatttttttactttctctctctattgctttggtttttgtgccacta 5244340  T

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Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 7934019 - 7934087
Alignment:
Q  1 attttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcactatc 70  Q
    ||||||||||||||||||||||| |  || || ||||| ||| |||||||||| ||||| ||||||||||    
T  7934019 attttctctctcatactcacattatcttcttactttctctttttattgctttggttttt-tgtcactatc 7934087  T

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Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 68
Target Start/End: Original strand, 13735203 - 13735240
Alignment:
Q  31 tattttctttttctattgctttgatttttgtgtcacta 68  Q
    |||||||||| |||||||||||| ||||||||||||||    
T  13735203 tattttctttctctattgctttggtttttgtgtcacta 13735240  T

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Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 68
Target Start/End: Complemental strand, 34064126 - 34064065
Alignment:
Q  7 tctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcacta 68  Q
    ||||||||||||||||| || | ||| ||||||| |||||| ||||||||||| | ||||||    
T  34064126 tctctcatactcacattatttttctactttctttctctattactttgatttttatatcacta 34064065  T

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Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 68
Target Start/End: Original strand, 35597208 - 35597273
Alignment:
Q  3 tttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcacta 68  Q
    ||||||||||||||||||||| || |  || ||||| | ||||||| |||| ||||||||||||||    
T  35597208 tttctctctcatactcacattatttttttactttctctctctattgttttggtttttgtgtcacta 35597273  T

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Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 68
Target Start/End: Original strand, 38926674 - 38926739
Alignment:
Q  3 tttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcacta 68  Q
    ||||||||||||||||||||| |  |  || ||||| | |||||||||||| ||||||||||||||    
T  38926674 tttctctctcatactcacattatctttttactttctctctctattgctttggtttttgtgtcacta 38926739  T

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Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 39540279 - 39540316
Alignment:
Q  1 attttctctctcatactcacattgttctcctattttct 38  Q
    ||||||||||||||||||||||| ||||| ||||||||    
T  39540279 attttctctctcatactcacattattctcttattttct 39540316  T

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Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 68
Target Start/End: Original strand, 41505537 - 41505602
Alignment:
Q  3 tttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcacta 68  Q
    ||||||||||||||||||||| |  |  || ||||| | |||||||||||| ||||||||||||||    
T  41505537 tttctctctcatactcacattatctttttactttctctctctattgctttggtttttgtgtcacta 41505602  T

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Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 68
Target Start/End: Complemental strand, 52254163 - 52254098
Alignment:
Q  3 tttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcacta 68  Q
    |||||||||||||||| ||||||  |  || ||||| | |||||||||||| ||||||||||||||    
T  52254163 tttctctctcatactcgcattgtctttttactttctctctctattgctttggtttttgtgtcacta 52254098  T

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Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 67
Target Start/End: Original strand, 9692772 - 9692836
Alignment:
Q  3 tttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcact 67  Q
    ||||||||||||| ||||||| |  |  || ||||| | ||||||||||||||||||||||||||    
T  9692772 tttctctctcatattcacattatcattttactttctctctctattgctttgatttttgtgtcact 9692836  T

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Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 9753263 - 9753327
Alignment:
Q  1 attttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtca 65  Q
    ||||| |||||||||||||||||||  |  |||||||| | ||||||| |||| |||||||||||    
T  9753263 attttatctctcatactcacattgtgtttttattttctctatctattgttttggtttttgtgtca 9753327  T

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Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 62
Target Start/End: Complemental strand, 14207282 - 14207223
Alignment:
Q  3 tttctctctcatactcacattgt-tctcctattttctttttctattgctttgatttttgtg 62  Q
    ||||||||||||||||||||| | ||| | ||||||| | |||||||||||||||||||||    
T  14207282 tttctctctcatactcacattatgtcttc-attttctctctctattgctttgatttttgtg 14207223  T

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Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 62
Target Start/End: Complemental strand, 14215030 - 14214971
Alignment:
Q  3 tttctctctcatactcacattgt-tctcctattttctttttctattgctttgatttttgtg 62  Q
    ||||||||||||||||||||| | ||| | ||||||| | |||||||||||||||||||||    
T  14215030 tttctctctcatactcacattatgtcttc-attttctctctctattgctttgatttttgtg 14214971  T

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Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 50314669 - 50314733
Alignment:
Q  1 attttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtca 65  Q
    ||||||||||||||||||||||| |  |  || ||||| | |||||| |||||||||||||||||    
T  50314669 attttctctctcatactcacattatgtttttactttctctctctattactttgatttttgtgtca 50314733  T

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Target: scaffold0432 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0432
Description:

Target: scaffold0432; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 7 - 75
Target Start/End: Complemental strand, 6540 - 6472
Alignment:
Q  7 tctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcactatccaaat 75  Q
    |||||||||||||||||||||| ||| ||||| | |||||| |||||||||||||||||||||| ||||    
T  6540 tctctcatactcacattgttcttctactttctctctctattactttgatttttgtgtcactatctaaat 6472  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 3 - 81
Target Start/End: Complemental strand, 11635559 - 11635481
Alignment:
Q  3 tttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcactatccaaatttcttt 81  Q
    ||||||||||||| |||||||| ||| ||||||||| | |||||| |||||||||||||| ||||||| |||| |||||    
T  11635559 tttctctctcatattcacattgctcttctattttctctctctattactttgatttttgtgccactatctaaatctcttt 11635481  T

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Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 3 - 82
Target Start/End: Complemental strand, 5739788 - 5739709
Alignment:
Q  3 tttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcactatccaaatttcttta 82  Q
    ||||| ||| ||||||| ||||| || ||| ||||| ||||||||||||||||||||||||||||| | || ||||||||    
T  5739788 tttctttcttatactcatattgtccttctaatttctctttctattgctttgatttttgtgtcactacctaattttcttta 5739709  T

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Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 7 - 81
Target Start/End: Complemental strand, 18065110 - 18065036
Alignment:
Q  7 tctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcactatccaaatttcttt 81  Q
    |||||||||| ||||||||||| ||| ||||| | |||||||||||||| |||||| ||||| | ||||||||||    
T  18065110 tctctcatacacacattgttcttctactttctctctctattgctttgatatttgtgccactacctaaatttcttt 18065036  T

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Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 81
Target Start/End: Original strand, 8645355 - 8645433
Alignment:
Q  3 tttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcactatccaaatttcttt 81  Q
    ||||||||||||||||||||| | ||  || ||||| | |||||||||||||||| || ||||||| | ||||||||||    
T  8645355 tttctctctcatactcacattatccttttactttctctctctattgctttgatttatgcgtcactacctaaatttcttt 8645433  T

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Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 81
Target Start/End: Original strand, 33712367 - 33712445
Alignment:
Q  3 tttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcactatccaaatttcttt 81  Q
    |||||||||||||| ||||||||||| ||| ||||| | ||| |||||||||| ||||||  |||| | ||||||||||    
T  33712367 tttctctctcatacacacattgttcttctactttctctctctgttgctttgatatttgtgcaactacctaaatttcttt 33712445  T

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Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 40 - 81
Target Start/End: Original strand, 3772439 - 3772480
Alignment:
Q  40 tttctattgctttgatttttgtgtcactatccaaatttcttt 81  Q
    ||||||||| ||||||||||||||||||||| ||||||||||    
T  3772439 tttctattgatttgatttttgtgtcactatctaaatttcttt 3772480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 63
Target Start/End: Complemental strand, 29459126 - 29459066
Alignment:
Q  3 tttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgt 63  Q
    |||||||||| |||||||||| |  ||  ||||||||| ||||||||||||||||||||||    
T  29459126 tttctctctcgtactcacattatgttctcattttctttctctattgctttgatttttgtgt 29459066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 42 - 81
Target Start/End: Original strand, 14910262 - 14910301
Alignment:
Q  42 tctattgctttgatttttgtgtcactatccaaatttcttt 81  Q
    ||||||||||||||||||||||||||| | ||||||||||    
T  14910262 tctattgctttgatttttgtgtcactacctaaatttcttt 14910301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 27612919 - 27612983
Alignment:
Q  1 attttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtca 65  Q
    ||||||||||||||| ||||||| |  |  |||| |||||||||||| |||||||||| ||||||    
T  27612919 attttctctctcatattcacattatatttttattatctttttctattactttgattttcgtgtca 27612983  T

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Target: scaffold0110 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 3 - 79
Target Start/End: Complemental strand, 28351 - 28275
Alignment:
Q  3 tttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcactatccaaatttct 79  Q
    |||||||||||||| ||||||||||| ||| ||||| | |||||| ||||||||||| || ||||||  ||||||||    
T  28351 tttctctctcatacacacattgttcttctactttctctctctattactttgatttttatgccactatataaatttct 28275  T

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Target: scaffold0276 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0276
Description:

Target: scaffold0276; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 1689 - 1769
Alignment:
Q  1 attttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcactatccaaatttcttt 81  Q
    |||||||||||||||||| |||| |  |  || ||||| | | ||||||||||||||||||| ||||||| ||||||||||    
T  1689 attttctctctcatactctcattatcattttactttctctctttattgctttgatttttgtgccactatctaaatttcttt 1769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 65
Target Start/End: Complemental strand, 22868 - 22816
Alignment:
Q  13 atactcacattgttctcctattttctttttctattgctttgatttttgtgtca 65  Q
    |||||||||||||| |  || ||||| |||||||||||||| |||||||||||    
T  22868 atactcacattgtttttttaatttctctttctattgctttggtttttgtgtca 22816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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