View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2508_low_8 (Length: 298)
Name: NF2508_low_8
Description: NF2508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2508_low_8 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 183; Significance: 5e-99; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 11 - 249
Target Start/End: Complemental strand, 1507028 - 1506791
Alignment:
| Q |
11 |
aagaaaaatctgaaaaggttcgaatgtcattggaagagatatccacattttatgtttaacgggtctcgaatatgatttaattttagtggagaaaatctac |
110 |
Q |
| |
|
||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
1507028 |
aagaaaaatctgaaaaggttcaaatgtcgttggaagagatatccacattttatgtttaacgggtctcgaatatgatttaattttagtggaaaaaatctac |
1506929 |
T |
|
| Q |
111 |
atgaaatcaaccaaaaataatnnnnnnnnntaaatgaattataaaagttttttcataagggtcgtatctacttggagtattattctgtttgttaaagtgg |
210 |
Q |
| |
|
||| |||| |||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1506928 |
atggaatcgaccaaaaataattaaaaaaa-taaatgaattataaaagtttttccataagggtcgtatctacttggagtattattctgtttgttaaagtgg |
1506830 |
T |
|
| Q |
211 |
tgacatatgattcaaatatatgattcattgaaagcacta |
249 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1506829 |
tgacatatgattcaaatatatgattcattgaaagcacta |
1506791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 51 - 131
Target Start/End: Original strand, 28925310 - 28925390
Alignment:
| Q |
51 |
atccacattttatgtttaacgggtctcgaatatgatttaattttagtggagaaaatctacatgaaatcaaccaaaaataat |
131 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| || |||||| ||||||| |
|
|
| T |
28925310 |
atccacattttatgtttaacgggtcttgaatatgatttaattttagtggagaacatctacatggaaccaaccagaaataat |
28925390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University