View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2509_high_14 (Length: 239)
Name: NF2509_high_14
Description: NF2509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2509_high_14 |
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Alignment Details
Target: chr3 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 52866978 - 52867207
Alignment:
| Q |
1 |
acactgacaaagttgagttggaaaagtcatgaagaagaagttgaagttg---------tataattattgcttgtgtgtgataaatttagtagatgtaggg |
91 |
Q |
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| T |
52866978 |
acactgacaaagttgagttggaaaagtcatgaagaagaagttgaagttgaagttgtattattattattgcttgtgtgtgataaatttagtagatgtaggg |
52867077 |
T |
|
| Q |
92 |
tgcattgcatggcctaaagtctgaaacaaataaaagcctgccctgcgttaatgtattcctgtgaatttcgttttactgtatttgttgtgaggaaagaaag |
191 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52867078 |
tgcattgcatggcctaaagtctgaaacaaataaaagcctgccctgcgttaatgtattcctgtgaatttcgttttactgtatttgttgtgaggaaagaaag |
52867177 |
T |
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| Q |
192 |
tcccaatgtcaaatttaataatggccccac |
221 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
52867178 |
tcccaatgtcaaatttaataatggccccac |
52867207 |
T |
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