View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2509_high_16 (Length: 223)
Name: NF2509_high_16
Description: NF2509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2509_high_16 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 30995250 - 30995473
Alignment:
| Q |
1 |
aataccaccctcctccatcatcccccta-aagaatctgcatcatccaaacctcgaaaaccgttgagaaagacttagaacacataatttagctatcatctt |
99 |
Q |
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||||||||||||||||||||||| ||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
30995250 |
aataccaccctcctccatcatccacctccaagaatctgcatcatccaaaccacgaaaaccgttgagaaagacttagaacacataatttaactatcatctt |
30995349 |
T |
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| Q |
100 |
ttaattgtagtaattgcataccggtctccatatatagttacttgcattgcaaacatactaagcaaaaaagtaactttttaacaacaacgcccttttatta |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30995350 |
ttaattgtagtaattgcataccggtctccatatatagttacttgcattgcaaacatactaagcaaaaaagtaactttttaacaacaacgcccttttatta |
30995449 |
T |
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| Q |
200 |
ccactttttataatatttatttat |
223 |
Q |
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|||||||||||||||||||||||| |
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| T |
30995450 |
ccactttttataatatttatttat |
30995473 |
T |
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