View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2509_high_3 (Length: 402)
Name: NF2509_high_3
Description: NF2509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2509_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 98 - 389
Target Start/End: Complemental strand, 42987344 - 42987069
Alignment:
| Q |
98 |
tcttatttacaaacaaagataagagaggttgaattcaccctttgtaaaatataagtcaactacttatcaactagatcaatctcgattggcaaatgatatc |
197 |
Q |
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| T |
42987344 |
tcttatttacaaacaaagataagagaggttgaattcaccctttgtaaaatataagtcaactacttatcaactagatcaatctcggttggcaaatgatatc |
42987245 |
T |
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| Q |
198 |
tattatggcacatatcatttataaaaattaaaattaaggattttcattgaaaataaattttgaaaaccaaagatccatgaaaccaatgtccagctaatca |
297 |
Q |
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| T |
42987244 |
tattatggcacatatcgtttataaaaattaaaattaaggattttcattgaaaataaattttgaaaa----------------ccaatgtccagctaatca |
42987161 |
T |
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| Q |
298 |
taggagtgtcaaactcaaactcattctctttatgctgatgagattaagatttctgccaagatactacaaagaatttaaaaaatgctatgtct |
389 |
Q |
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| T |
42987160 |
taggagtgtcaaactcatactcattctctttatactgatgagattacgatttctgccaagatactaaaaagaatttaaaaaatgctatgtct |
42987069 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 267
Target Start/End: Original strand, 35088150 - 35088194
Alignment:
| Q |
222 |
aaattaaaattaaggattttcattgaaaataaattttgaaaaccaa |
267 |
Q |
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| T |
35088150 |
aaattaaaattcaggattt-cactgaaaataaattttgaaaaccaa |
35088194 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 72; Significance: 1e-32; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 18 - 101
Target Start/End: Original strand, 22905266 - 22905349
Alignment:
| Q |
18 |
aaaggaaaggttgtcttctccaagcaaaattccaaaacacctcaccgtcaataatactccacaattctccaacttttgcctctt |
101 |
Q |
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| T |
22905266 |
aaaggaaaggttgtcttctccaagtaaaattccaaaacacctcaccatcaataatactccacaattctccgacttttgcctctt |
22905349 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 18 - 101
Target Start/End: Original strand, 22956934 - 22957017
Alignment:
| Q |
18 |
aaaggaaaggttgtcttctccaagcaaaattccaaaacacctcaccgtcaataatactccacaattctccaacttttgcctctt |
101 |
Q |
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| T |
22956934 |
aaaggaaaggttgtcttctccaagtaaaattccaaaacacctcaccatcaataatactccacaattctccgacttttgcctctt |
22957017 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 18 - 101
Target Start/End: Original strand, 43442025 - 43442107
Alignment:
| Q |
18 |
aaaggaaaggttgtcttctccaagcaaaattccaaaacacctcaccgtcaataatactccacaattctccaacttttgcctctt |
101 |
Q |
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| T |
43442025 |
aaaggaaaagttgtcttctc-aagtaaaattccaaaacacctcaccctcaataatactccacaaatctccgacttttgcctctt |
43442107 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 22 - 101
Target Start/End: Original strand, 27408815 - 27408894
Alignment:
| Q |
22 |
gaaaggttgtcttctccaagcaaaattccaaaacacctcaccgtcaataatactccacaattctccaacttttgcctctt |
101 |
Q |
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||||||||| | |||||||| || |||||||| |||| || ||||||| ||||||||| ||||| ||||||||||||| |
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| T |
27408815 |
gaaaggttgccgtctccaagtaagattccaaagcaccgtcccatcaataaaactccacaagtctccgacttttgcctctt |
27408894 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 22 - 101
Target Start/End: Complemental strand, 24722061 - 24721982
Alignment:
| Q |
22 |
gaaaggttgtcttctccaagcaaaattccaaaacacctcaccgtcaataatactccacaattctccaacttttgcctctt |
101 |
Q |
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||||||||||| |||| ||| || |||||||| |||| || ||||||| ||||||||| ||||| ||||||||||||| |
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| T |
24722061 |
gaaaggttgtcgtctcgaagtaagattccaaagcaccgtcccatcaataaaactccacaagtctccgacttttgcctctt |
24721982 |
T |
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