View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2509_high_5 (Length: 327)

Name: NF2509_high_5
Description: NF2509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2509_high_5
NF2509_high_5
[»] chr7 (8 HSPs)
chr7 (91-315)||(17736943-17737167)
chr7 (16-253)||(17736285-17736522)
chr7 (91-257)||(17708706-17708872)
chr7 (107-257)||(16730588-16730738)
chr7 (91-243)||(17718530-17718682)
chr7 (91-253)||(17699597-17699759)
chr7 (91-253)||(16722583-16722745)
chr7 (208-257)||(17714184-17714233)
[»] chr3 (7 HSPs)
chr3 (98-199)||(46480224-46480325)
chr3 (107-191)||(5160717-5160801)
chr3 (98-200)||(46491137-46491239)
chr3 (98-180)||(51944321-51944403)
chr3 (98-191)||(5156676-5156769)
chr3 (99-188)||(46498380-46498469)
chr3 (98-187)||(46544915-46545004)


Alignment Details
Target: chr7 (Bit Score: 213; Significance: 1e-117; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 91 - 315
Target Start/End: Original strand, 17736943 - 17737167
Alignment:
Q  91 tccaatcgactttgttgctgaccacccttttttatttctgatcagagaagagtttagtggaaccatactctttgttggaaaggtggtcaatcctcttgat 190  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17736943 tccaatcgactttgtagctgaccacccttttttatttctgatcagagaagagtttagtggaaccatactctttgttggaaaggtggtcaatcctcttgat 17737042  T
Q  191 ggttgatttttgaattccatagtatcttaaatatgttttctaagcaacccatttttatattttaatatataaatggggtaaatgatgtcctattccatat 290  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  17737043 ggttgatttttgaattccatagtatcttaaatatgttttctaagcaacccatttttatattttaatatataaatggggtaaattatgtcctattccatat 17737142  T
Q  291 tcgtatactatctaaaatatatttt 315  Q
    ||||||||||||| |||||||||||    
T  17737143 tcgtatactatctgaaatatatttt 17737167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 16 - 253
Target Start/End: Original strand, 17736285 - 17736522
Alignment:
Q  16 agaaggtacgatagctgcagcgacagcccgtggcagtacaggcggcgctgctccatttcgtctnnnnnnnnnnnntccaatcgactttgttgctgaccac 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            |||||||||||||||||||||||||    
T  17736285 agaaggtacgatagctgcagcgacagcccgtggcagtacaggcggcgctgctccatttcgtctccctccgccccctccaatcgactttgttgctgaccac 17736384  T
Q  116 ccttttttatttctgatcagagaagagtttagtggaaccatactctttgttggaaaggtggtcaatcctcttgatggttgatttttgaattccatagtat 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  17736385 ccttttttatttctgatcagagaagagtttagtggaaccatactctttgttggaaaggtggtcaatcctcttgatggttgattgttgaattccatagtat 17736484  T
Q  216 cttaaatatgttttctaagcaacccatttttatatttt 253  Q
    || |||||||||||||||  |||||||||| |||||||    
T  17736485 ctcaaatatgttttctaaataacccattttcatatttt 17736522  T

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Target: chr7; HSP #3
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 91 - 257
Target Start/End: Original strand, 17708706 - 17708872
Alignment:
Q  91 tccaatcgactttgttgctgaccacccttttttatttctgatcagagaagagtttagtggaaccatactctttgttggaaaggtggtcaatcctcttgat 190  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17708706 tccaatggactttgttgctgaccacccttttttatttctgatcagagaagagtttagtggaaccatactctttgttggaaaggtggtcaatcctcttgat 17708805  T
Q  191 ggttgatttttgaattccatagtatcttaaatatgttttctaagcaacccatttttatattttaata 257  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17708806 ggttgattgttgaattccatagtatcttaaatatgttttctaagcaacccatttttatattttaata 17708872  T

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Target: chr7; HSP #4
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 107 - 257
Target Start/End: Original strand, 16730588 - 16730738
Alignment:
Q  107 gctgaccacccttttttatttctgatcagagaagagtttagtggaaccatactctttgttggaaaggtggtcaatcctcttgatggttgatttttgaatt 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  16730588 gctgaccacccttttttatttctgatcagagaagagtttagtggaaccatactctttgttggaaaggtggtcaatcctcttgatggttgattgttgaatt 16730687  T
Q  207 ccatagtatcttaaatatgttttctaagcaacccatttttatattttaata 257  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16730688 ccatagtatcttaaatatgttttctaagcaacccatttttatattttaata 16730738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 91 - 243
Target Start/End: Original strand, 17718530 - 17718682
Alignment:
Q  91 tccaatcgactttgttgctgaccacccttttttatttctgatcagagaagagtttagtggaaccatactctttgttggaaaggtggtcaatcctcttgat 190  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17718530 tccaatcgactttgtagctgaccacccttttttatttctgatcagagaagagtttagtggaaccatactctttgttggaaaggtggtcaatcctcttgat 17718629  T
Q  191 ggttgatttttgaattccatagtatcttaaatatgttttctaagcaacccatt 243  Q
    |||||||| ||||||||||||| ||||||||||||||||||||||||||||||    
T  17718630 ggttgattcttgaattccatagcatcttaaatatgttttctaagcaacccatt 17718682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 91 - 253
Target Start/End: Original strand, 17699597 - 17699759
Alignment:
Q  91 tccaatcgactttgttgctgaccacccttttttatttctgatcagagaagagtttagtggaaccatactctttgttggaaaggtggtcaatcctcttgat 190  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17699597 tccaatcgactttgtagctgaccacccttttttatttctgatcagagaagagtttagtggaaccatactctttgttggaaaggtggtcaatcctcttgat 17699696  T
Q  191 ggttgatttttgaattccatagtatcttaaatatgttttctaagcaacccatttttatatttt 253  Q
    |||| ||| |||||||||||||||||| |||||||||||||||  || |||||||||||||||    
T  17699697 ggttaattgttgaattccatagtatctcaaatatgttttctaaataatccatttttatatttt 17699759  T

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Target: chr7; HSP #7
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 91 - 253
Target Start/End: Original strand, 16722583 - 16722745
Alignment:
Q  91 tccaatcgactttgttgctgaccacccttttttatttctgatcagagaagagtttagtggaaccatactctttgttggaaaggtggtcaatcctcttgat 190  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16722583 tccaatggactttgttgctgaccacccttttttatttctgatcagagaagagtttagtggaaccatactctttgttggaaaggtggtcaatcctcttgat 16722682  T
Q  191 ggttgatttttgaattccatagtatcttaaatatgttttctaagcaacccatttttatatttt 253  Q
    |||| ||| |||||||||||||||||| |||||||||||||||  || ||||||| |||||||    
T  16722683 ggttaattgttgaattccatagtatctcaaatatgttttctaaataaaccattttaatatttt 16722745  T

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Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 208 - 257
Target Start/End: Original strand, 17714184 - 17714233
Alignment:
Q  208 catagtatcttaaatatgttttctaagcaacccatttttatattttaata 257  Q
    |||||||||| |||||||| || |||||||||||||||||| ||||||||    
T  17714184 catagtatctcaaatatgtcttataagcaacccatttttatgttttaata 17714233  T

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Target: chr3 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 98 - 199
Target Start/End: Original strand, 46480224 - 46480325
Alignment:
Q  98 gactttgttgctgaccacccttttttatttctgatcagagaagagtttagtggaaccatactctttgttggaaaggtggtcaatcctcttgatggttgat 197  Q
    |||||||| |||||||||||||| |||||| |||| |||||||| || |  ||||| ||  ||||||||||| ||||| |||||||||||| ||| ||||    
T  46480224 gactttgtagctgaccaccctttcttatttatgattagagaagacttgaccggaacaatcatctttgttggacaggtgctcaatcctcttgctgggtgat 46480323  T
Q  198 tt 199  Q
    ||    
T  46480324 tt 46480325  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 107 - 191
Target Start/End: Original strand, 5160717 - 5160801
Alignment:
Q  107 gctgaccacccttttttatttctgatcagagaagagtttagtggaaccatactctttgttggaaaggtggtcaatcctcttgatg 191  Q
    |||||||||||||| ||||||||||| |||||||| |  | ||||||||| |||||||||||| | ||  |||||||||||||||    
T  5160717 gctgaccaccctttcttatttctgattagagaagattggactggaaccattctctttgttggacaagtactcaatcctcttgatg 5160801  T

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Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 98 - 200
Target Start/End: Original strand, 46491137 - 46491239
Alignment:
Q  98 gactttgttgctgaccacccttttttatttctgatcagagaagagtttagtggaaccatactctttgttggaaaggtggtcaatcctcttgatggttgat 197  Q
    |||||||| |||| ||||||||| || ||| |||| |||||||| || | |||||| ||  ||||||||||| ||||| |||||||||||| ||| ||||    
T  46491137 gactttgtggctggccaccctttcttgtttatgattagagaagaattgactggaacaatcatctttgttggacaggtgttcaatcctcttgctgggtgat 46491236  T
Q  198 ttt 200  Q
    |||    
T  46491237 ttt 46491239  T

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Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 98 - 180
Target Start/End: Original strand, 51944321 - 51944403
Alignment:
Q  98 gactttgttgctgaccacccttttttatttctgatcagagaagagtttagtggaaccatactctttgttggaaaggtggtcaa 180  Q
    |||||||| |||||||||||||| ||||||||||| |||||||| || | |||||| ||  ||||||||||| ||||| ||||    
T  51944321 gactttgtagctgaccaccctttcttatttctgattagagaagatttgactggaacaatcatctttgttggacaggtgctcaa 51944403  T

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Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 98 - 191
Target Start/End: Original strand, 5156676 - 5156769
Alignment:
Q  98 gactttgttgctgaccacccttttttatttctgatcagagaagagtttagtggaaccatactctttgttggaaaggtggtcaatcctcttgatg 191  Q
    |||||||| ||||| |||||||| |||||||| || |||||| | |  | ||||||||| |||||||||||| | ||| ||||||| |||||||    
T  5156676 gactttgtagctgatcaccctttcttatttctaattagagaaaactcgactggaaccattctctttgttggacaagtgctcaatccacttgatg 5156769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 188
Target Start/End: Original strand, 46498380 - 46498469
Alignment:
Q  99 actttgttgctgaccacccttttttatttctgatcagagaagagtttagtggaaccatactctttgttggaaaggtggtcaatcctcttg 188  Q
    ||||||| ||||||||||| || |||||| | ||||||||||| || |  ||||| ||  ||||||||||  ||||| ||||||||||||    
T  46498380 actttgtagctgaccacccattcttatttattatcagagaagatttgaccggaactatcgtctttgttgggcaggtgctcaatcctcttg 46498469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 187
Target Start/End: Original strand, 46544915 - 46545004
Alignment:
Q  98 gactttgttgctgaccacccttttttatttctgatcagagaagagtttagtggaaccatactctttgttggaaaggtggtcaatcctctt 187  Q
    |||||||| |||||||||||||| || ||| ||||||||||||| ||   ||||||  |||||||| ||||| | ||  |||||||||||    
T  46544915 gactttgtagctgaccaccctttcttgtttttgatcagagaagatttgtctggaacggtactctttattggacaagttctcaatcctctt 46545004  T

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