View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2509_low_1 (Length: 822)
Name: NF2509_low_1
Description: NF2509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2509_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 488; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 488; E-Value: 0
Query Start/End: Original strand, 19 - 540
Target Start/End: Complemental strand, 3239455 - 3238935
Alignment:
| Q |
19 |
ctttattcaatagttttt-catattttcgtggatcccttcaattcttttctccccctccttctctccttagaaacaaacccttctcttgtattctttcat |
117 |
Q |
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| T |
3239455 |
ctttattcaatagttttttcatattttcgtggatcccttcaattcttttctccccctccttctctccttagaaacaaacccttctcttgtattctttcat |
3239356 |
T |
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| Q |
118 |
tcattttagattttgcatttgaaactcaatttcttatgccattttgatacttccctatatgaaattataagaaaaaagaaaattaaacaaaggcttttgc |
217 |
Q |
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| T |
3239355 |
tcattttagattttgcatttgaaactcaatttcttatgccattttgatacttccctatatgaaattataagaaaaaaggaaattgaacaaaggcttttgc |
3239256 |
T |
|
| Q |
218 |
atgtgtgatcaataacattccctatatcaaaagaagtttcatataatgatgagaaatggatccaaaatcaatggcttctggatttgaaggaataaccatc |
317 |
Q |
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| T |
3239255 |
atgtgtgatcaataacattccctatatcaaaagaagtttcata--atgatgagaaatggatccaaaatcaatggcttctggatttgaaggaataaccatc |
3239158 |
T |
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| Q |
318 |
ttcctcatttcaatgtttttatagctccttcaacatcttaattctcttcaaaggtactcctattgttttatttattttttctctgatcatgtttaccctt |
417 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
3239157 |
ttcctcatttcaatgtttttatagctccttcaacgtcttaattctcttcaaaggtactcctattgttttatttattttatctctgatcatgtttaccctt |
3239058 |
T |
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| Q |
418 |
aacaattttcttaatctccacattaatatgacaacaaattaattaatcatctttgtattcttataatcaaataccaatcttcaatcattcatattataga |
517 |
Q |
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| T |
3239057 |
aacaattttcttaatctccacattaatatgacaacaaattaattaatcatctttgtattcttataatcaaataccaatcttcaatcattcatattataga |
3238958 |
T |
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| Q |
518 |
ctaatataggaaaggttcctctt |
540 |
Q |
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| T |
3238957 |
ctaatataggaaaggttcctctt |
3238935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 525 - 812
Target Start/End: Complemental strand, 3238917 - 3238630
Alignment:
| Q |
525 |
aggaaaggttcctcttaaatcacatgcattgaactcatcccttttattgaattcataattgtgtacaatatttaattattcannnnnnnatgaccaaagt |
624 |
Q |
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| T |
3238917 |
aggaaaggttcctcttaaatcacatgcattgaactaatcccttttattgaattcataattgtgtacaatatttaattattcatttttttatgaccaaagt |
3238818 |
T |
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| Q |
625 |
ttaatcatgcatattcatattgtgacaggcaacaaaagcattaaaattaggatttttgcttctacattttgccattctaataggctaccatattgagctt |
724 |
Q |
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| T |
3238817 |
ttaatcatgcatattcatattgtgacaggcaacaaaagcattaaaattaggatttttgcttctacattttgccattctaataggctaccatattgagctt |
3238718 |
T |
|
| Q |
725 |
gggtttgtgattccaccatgacgattaaagggatctacaaaagttttaagtacatatcccaaatttttggtaatttatctatcctttg |
812 |
Q |
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| T |
3238717 |
gggtttgtgattccaccatgacgattaaagggatctacaaaagttttaagtacatatcccaaatttttggtaatttatctatcctttg |
3238630 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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