View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2509_low_12 (Length: 246)
Name: NF2509_low_12
Description: NF2509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2509_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 216; Significance: 1e-119; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 13 - 228
Target Start/End: Original strand, 3081100 - 3081315
Alignment:
| Q |
13 |
aatatatgaatttgttttaagtagattttctgaatatgcatgcagagttggaatctttggtgtgaagataaaagtttggaactgttagatccaatactga |
112 |
Q |
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| T |
3081100 |
aatatatgaatttgttttaagtagattttctgaatatgcatgcagagttggaatctttggtgtgaagataaaagtttggaactgttagatccaatactga |
3081199 |
T |
|
| Q |
113 |
aaaatacatacacaacaaatgaagttattaaatgcatacacattggtttgttatgtgtacaagaagatgcagtggatagaccaaccatgtccaatgttgt |
212 |
Q |
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| T |
3081200 |
aaaatacatacacaacaaatgaagttattaaatgcatacacattggtttgttatgtgtacaagaagatgcagtggatagaccaaccatgtccaatgttgt |
3081299 |
T |
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| Q |
213 |
tgtaatgctagcaagt |
228 |
Q |
| |
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|||||||||||||||| |
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| T |
3081300 |
tgtaatgctagcaagt |
3081315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 13 - 228
Target Start/End: Original strand, 3095537 - 3095752
Alignment:
| Q |
13 |
aatatatgaatttgttttaagtagattttctgaatatgcatgcagagttggaatctttggtgtgaagataaaagtttggaactgttagatccaatactga |
112 |
Q |
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| T |
3095537 |
aatatatgaatttgttttaagtagattttctgaatatgcatgcagagttggaatctttggtgtgaagataaaagtttggaactgttagatccaatactga |
3095636 |
T |
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| Q |
113 |
aaaatacatacacaacaaatgaagttattaaatgcatacacattggtttgttatgtgtacaagaagatgcagtggatagaccaaccatgtccaatgttgt |
212 |
Q |
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| T |
3095637 |
aaaatacatacacaacaaatgaagttattaaatgcatacacattggtttgttgtgtgtacaagaagatgcagtggatagaccaaccatgtccaatgttgt |
3095736 |
T |
|
| Q |
213 |
tgtaatgctagcaagt |
228 |
Q |
| |
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|||||||||||||||| |
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| T |
3095737 |
tgtaatgctagcaagt |
3095752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 48 - 228
Target Start/End: Complemental strand, 4547359 - 4547179
Alignment:
| Q |
48 |
atgcatgcagagttggaatctttggtgtgaagataaaagtttggaactgttagatccaatactgaaaaatacatacacaacaaatgaagttattaaatgc |
147 |
Q |
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|||||||||||||||||||||||||||| ||| ||||||||||||||||| ||| ||||||||||||||||||||| || ||||||||||| || || |
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| T |
4547359 |
atgcatgcagagttggaatctttggtgtcaaggaaaaagtttggaactgttggatacaatactgaaaaatacatacataagcaatgaagttatgaagtgt |
4547260 |
T |
|
| Q |
148 |
atacacattggtttgttatgtgtacaagaagatgcagtggatagaccaaccatgtccaatgttgttgtaatgctagcaagt |
228 |
Q |
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| T |
4547259 |
atacatattggtttgttgtgtgtacaagaagatgcagtggatagaccaaccatgtccaatgttgttgtcatgctggcaagt |
4547179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 132 - 223
Target Start/End: Complemental strand, 15721894 - 15721803
Alignment:
| Q |
132 |
tgaagttattaaatgcatacacattggtttgttatgtgtacaagaagatgcagtggatagaccaaccatgtccaatgttgttgtaatgctag |
223 |
Q |
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|||||| || |||||||||||||| ||||| || ||||||||||||||||||| ||| ||||||| ||||||| |||||||| ||||||| |
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| T |
15721894 |
tgaagtaatgaaatgcatacacataggtttattgtgtgtacaagaagatgcagcagatcgaccaacaatgtccaccgttgttgtcatgctag |
15721803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 52 - 205
Target Start/End: Complemental strand, 15696681 - 15696528
Alignment:
| Q |
52 |
atgcagagttggaatctttggtgtgaagataaaagtttggaactgttagatccaatactgaaaaatacatacacaacaaatgaagttattaaatgcatac |
151 |
Q |
| |
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||||||| |||||| ||||||||||||| ||||| |||||| | |||||||||| | ||||| |||||| || ||| ||||| || ||||||| |
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| T |
15696681 |
atgcagacttggaagctttggtgtgaaggaaaaagcttggaattaatagatccaatccacaaaaaatcatacattgaaagtgaggttatgaagtgcatac |
15696582 |
T |
|
| Q |
152 |
acattggtttgttatgtgtacaagaagatgcagtggatagaccaaccatgtcca |
205 |
Q |
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|||||||||| || ||||||||| ||||||| | ||| ||||||||||||||| |
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| T |
15696581 |
acattggtttattgtgtgtacaacaagatgctgcagatcgaccaaccatgtcca |
15696528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 148 - 205
Target Start/End: Complemental strand, 15763724 - 15763667
Alignment:
| Q |
148 |
atacacattggtttgttatgtgtacaagaagatgcagtggatagaccaaccatgtcca |
205 |
Q |
| |
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|||||||||||||| || ||||||||||||||||||| ||| |||||||||| |||| |
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| T |
15763724 |
atacacattggtttattgtgtgtacaagaagatgcagcagatcgaccaaccatttcca |
15763667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 148 - 205
Target Start/End: Complemental strand, 15804756 - 15804699
Alignment:
| Q |
148 |
atacacattggtttgttatgtgtacaagaagatgcagtggatagaccaaccatgtcca |
205 |
Q |
| |
|
|||||||||||||| | ||||||||||||||||||| ||| ||||||||||||||| |
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| T |
15804756 |
atacacattggtttactttgtgtacaagaagatgcagcagatcgaccaaccatgtcca |
15804699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 219
Target Start/End: Complemental strand, 15692193 - 15692119
Alignment:
| Q |
145 |
tgcatacacattggtttgttatgtgtacaagaagatgcagtggatagaccaaccatgtccaatgttgttgtaatg |
219 |
Q |
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|||||| |||| ||| | || ||||| ||||||||||| | ||||||||||||||||| | ||||||||||||| |
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| T |
15692193 |
tgcataaacataggtcttttgtgtgttcaagaagatgcggcagatagaccaaccatgtcaactgttgttgtaatg |
15692119 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 144 - 205
Target Start/End: Complemental strand, 15703189 - 15703128
Alignment:
| Q |
144 |
atgcatacacattggtttgttatgtgtacaagaagatgcagtggatagaccaaccatgtcca |
205 |
Q |
| |
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||||||||||| |||||| || || ||||||||||||||| ||| ||||||||||||||| |
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|
| T |
15703189 |
atgcatacacaatggtttattgtgcatacaagaagatgcagcagatcgaccaaccatgtcca |
15703128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 148 - 205
Target Start/End: Complemental strand, 15799142 - 15799085
Alignment:
| Q |
148 |
atacacattggtttgttatgtgtacaagaagatgcagtggatagaccaaccatgtcca |
205 |
Q |
| |
|
|||||||||||||| | ||||||||||||||||||| ||| ||||||| ||||||| |
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|
| T |
15799142 |
atacacattggtttactttgtgtacaagaagatgcagcagatcgaccaacgatgtcca |
15799085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 132 - 177
Target Start/End: Original strand, 47593954 - 47593999
Alignment:
| Q |
132 |
tgaagttattaaatgcatacacattggtttgttatgtgtacaagaa |
177 |
Q |
| |
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|||||||||||| |||||||| ||||||||||||||||| |||||| |
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| T |
47593954 |
tgaagttattaagtgcatacagattggtttgttatgtgttcaagaa |
47593999 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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