View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2509_low_13 (Length: 245)

Name: NF2509_low_13
Description: NF2509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2509_low_13
NF2509_low_13
[»] chr1 (5 HSPs)
chr1 (1-238)||(30995849-30996086)
chr1 (190-237)||(50571280-50571327)
chr1 (147-238)||(47555819-47555910)
chr1 (140-238)||(37522951-37523049)
chr1 (190-222)||(7790699-7790731)
[»] chr5 (5 HSPs)
chr5 (175-238)||(14299311-14299374)
chr5 (148-217)||(27374353-27374422)
chr5 (192-238)||(9818732-9818778)
chr5 (192-238)||(38845441-38845487)
chr5 (140-202)||(43012683-43012745)
[»] chr6 (4 HSPs)
chr6 (140-236)||(6654133-6654229)
chr6 (140-238)||(765427-765525)
chr6 (192-238)||(4910906-4910952)
chr6 (140-232)||(26280551-26280643)
[»] chr7 (3 HSPs)
chr7 (140-238)||(41386856-41386954)
chr7 (179-212)||(40561825-40561858)
chr7 (175-227)||(35105139-35105191)
[»] chr8 (3 HSPs)
chr8 (192-236)||(44141093-44141137)
chr8 (70-129)||(10892954-10893014)
chr8 (190-238)||(36200173-36200221)
[»] chr4 (5 HSPs)
chr4 (192-236)||(50061671-50061715)
chr4 (194-236)||(41370053-41370095)
chr4 (185-238)||(14596680-14596733)
chr4 (150-238)||(18508677-18508765)
chr4 (168-212)||(47514273-47514317)
[»] chr3 (2 HSPs)
chr3 (190-234)||(25359619-25359663)
chr3 (142-209)||(41115432-41115499)
[»] scaffold0005 (1 HSPs)
scaffold0005 (185-238)||(220645-220698)
[»] chr2 (1 HSPs)
chr2 (197-238)||(36256051-36256092)


Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 30995849 - 30996086
Alignment:
Q  1 catgatacacaacttacatattataacataaagagatcatgtcatttgtgttcaattttgttttaaactcatttttcctccttactccaacaattaaacc 100  Q
    ||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30995849 catgatacacaacttacatatgataacataaagagatcctgtcatttgtgttcaattttgttttaaactcatttttcctccttactccaacaattaaacc 30995948  T
Q  101 ccaacaaatttcgtcaaactcaaacaacaaataatgtgtattgattatgacatgtttgtttggtttgaagtagtattgatttttctttaagaattgattc 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  30995949 ccaacaaatttcgtcaaactcaaacaacaaataatgtgtattgattataacatgtttgtttggtttcaagtagtattgatttttctttaagaattgattc 30996048  T
Q  201 tacttgaagttatgattagtagttttttattctagaat 238  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  30996049 tacttgaagttatgattagtagttttttattatagaat 30996086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 190 - 237
Target Start/End: Original strand, 50571280 - 50571327
Alignment:
Q  190 agaattgattctacttgaagttatgattagtagttttttattctagaa 237  Q
    ||||||||||||||||||||||| |||| |||||||||||||||||||    
T  50571280 agaattgattctacttgaagttaggatttgtagttttttattctagaa 50571327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 147 - 238
Target Start/End: Original strand, 47555819 - 47555910
Alignment:
Q  147 atgacatgtttgtttggtttgaagtagtattgatttttctttaagaattgattctacttgaagttatgattagtagttttttattctagaat 238  Q
    |||||||||||||| | ||| ||||||   ||||||| |||||| ||||||||||| |||||  ||| ||| ||||||||||||| ||||||    
T  47555819 atgacatgtttgttcgctttcaagtagagatgattttgctttaaaaattgattctatttgaaactataatttgtagttttttattttagaat 47555910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 238
Target Start/End: Complemental strand, 37523049 - 37522951
Alignment:
Q  140 attgattatgacatgtttgtttggtttgaagtagtattgatttttctttaagaattgattctacttgaagttatgattagtagttttttattctagaat 238  Q
    ||||||||||||||||||| ||| | || ||||| ||||||||||  |   ||||||||||||||||||| ||  | | | |||||||||| |||||||    
T  37523049 attgattatgacatgtttgattgctctggagtagaattgattttttctctcgaattgattctacttgaagctagaagttggagttttttatcctagaat 37522951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 222
Target Start/End: Complemental strand, 7790731 - 7790699
Alignment:
Q  190 agaattgattctacttgaagttatgattagtag 222  Q
    |||||||||||||||||||||||||||| ||||    
T  7790731 agaattgattctacttgaagttatgatttgtag 7790699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 175 - 238
Target Start/End: Original strand, 14299311 - 14299374
Alignment:
Q  175 attgatttttctttaagaattgattctacttgaagttatgattagtagttttttattctagaat 238  Q
    ||||||||| |||| | ||||||||||||||||||||| |||| ||||||||||||||||||||    
T  14299311 attgattttgcttttaaaattgattctacttgaagttaggatttgtagttttttattctagaat 14299374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 148 - 217
Target Start/End: Complemental strand, 27374422 - 27374353
Alignment:
Q  148 tgacatgtttgtttggtttgaagtagtattgatttttctttaagaattgattctacttgaagttatgatt 217  Q
    ||||||||||| ||| ||| |||||| ||| ||||| | |||||||||||||||||||||||||| ||||    
T  27374422 tgacatgtttggttgttttcaagtagaattaattttgccttaagaattgattctacttgaagttaggatt 27374353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 238
Target Start/End: Original strand, 9818732 - 9818778
Alignment:
Q  192 aattgattctacttgaagttatgattagtagttttttattctagaat 238  Q
    |||||||||||||||||| ||||||| |||| |||| ||||||||||    
T  9818732 aattgattctacttgaagctatgatttgtagcttttgattctagaat 9818778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 238
Target Start/End: Original strand, 38845441 - 38845487
Alignment:
Q  192 aattgattctacttgaagttatgattagtagttttttattctagaat 238  Q
    |||||||||||||||||| || |||| ||||||||| ||||||||||    
T  38845441 aattgattctacttgaagctaagatttgtagtttttgattctagaat 38845487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 202
Target Start/End: Original strand, 43012683 - 43012745
Alignment:
Q  140 attgattatgacatgtttgtttggtttgaagtagtattgatttttctttaagaattgattcta 202  Q
    ||||||| ||||||||||||||| |||  ||||| ||||||||| ||||  ||||||||||||    
T  43012683 attgattttgacatgtttgtttgatttagagtagaattgattttgctttctgaattgattcta 43012745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 140 - 236
Target Start/End: Complemental strand, 6654229 - 6654133
Alignment:
Q  140 attgattatgacatgtttgtttggtttgaagtagtattgatttttctttaagaattgattctacttgaagttatgattagtagttttttattctaga 236  Q
    |||||||||| |||||||| ||| | |  ||||| ||||||||||| || |||||| ||||||||||||| || |||| |||| |||| ||||||||    
T  6654229 attgattatgtcatgtttggttgctattgagtagaattgatttttccttcagaattaattctacttgaagctaggatttgtagcttttaattctaga 6654133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 140 - 238
Target Start/End: Complemental strand, 765525 - 765427
Alignment:
Q  140 attgattatgacatgtttgtttggtttgaagtagtattgatttttctttaagaattgattctacttgaagttatgattagtagttttttattctagaat 238  Q
    ||||||| |||| |||||| ||| ||| |||||| | || ||||   | ||||||||||||||||||||| ||||||| |||| |||| ||||||||||    
T  765525 attgattctgacgtgtttggttgcttttaagtagaactggttttggctcaagaattgattctacttgaagctatgatttgtagcttttgattctagaat 765427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 238
Target Start/End: Original strand, 4910906 - 4910952
Alignment:
Q  192 aattgattctacttgaagttatgattagtagttttttattctagaat 238  Q
    |||||||||||||||||| ||||||| |||| |||| ||||||||||    
T  4910906 aattgattctacttgaagctatgatttgtagcttttgattctagaat 4910952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 232
Target Start/End: Original strand, 26280551 - 26280643
Alignment:
Q  140 attgattatgacatgtttgtttggtttgaagtagtattgatttttctttaagaattgattctacttgaagttatgattagtagttttttattc 232  Q
    ||||||| ||||||||||| ||| |||   |||| ||||||||| | | |||||||||||| |||||||| ||  ||| ||||||||| ||||    
T  26280551 attgattttgacatgtttgattgttttttggtagaattgattttgcctcaagaattgattccacttgaagctagaatttgtagtttttgattc 26280643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 140 - 238
Target Start/End: Complemental strand, 41386954 - 41386856
Alignment:
Q  140 attgattatgacatgtttgtttggtttgaagtagtattgatttttctttaagaattgattctacttgaagttatgattagtagttttttattctagaat 238  Q
    ||||||| ||||||||||| ||| |||  ||||  ||||||||  | || |||||||||||||||||||| || |||| |||| |||| ||||||||||    
T  41386954 attgattctgacatgtttgattgctttcgagtataattgatttcaccttcagaattgattctacttgaagctaggatttgtagcttttaattctagaat 41386856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 179 - 212
Target Start/End: Complemental strand, 40561858 - 40561825
Alignment:
Q  179 atttttctttaagaattgattctacttgaagtta 212  Q
    ||||||||| ||||||||||||||||||||||||    
T  40561858 atttttcttcaagaattgattctacttgaagtta 40561825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 227
Target Start/End: Original strand, 35105139 - 35105191
Alignment:
Q  175 attgatttttctttaagaattgattctacttgaagttatgattagtagttttt 227  Q
    ||||||||| |||  |||||||||||||||||||| ||| ||| |||||||||    
T  35105139 attgattttgcttgtagaattgattctacttgaagctataatttgtagttttt 35105191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 192 - 236
Target Start/End: Complemental strand, 44141137 - 44141093
Alignment:
Q  192 aattgattctacttgaagttatgattagtagttttttattctaga 236  Q
    ||||||||||||||||||||| |||| ||||||||| ||||||||    
T  44141137 aattgattctacttgaagttaggatttgtagtttttgattctaga 44141093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 129
Target Start/End: Complemental strand, 10893014 - 10892954
Alignment:
Q  70 catttttcctccttactccaaca-attaaaccccaacaaatttcgtcaaactcaaacaaca 129  Q
    |||||| | ||| |||||||||| || |||| |||||||| ||||||||||||||||||||    
T  10893014 cattttccttccctactccaacacatcaaacaccaacaaaattcgtcaaactcaaacaaca 10892954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 238
Target Start/End: Complemental strand, 36200221 - 36200173
Alignment:
Q  190 agaattgattctacttgaagttatgattagtagttttttattctagaat 238  Q
    ||||||||||| |||||||||||||||| || | |||| ||||||||||    
T  36200221 agaattgattcaacttgaagttatgatttgtcgattttgattctagaat 36200173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 192 - 236
Target Start/End: Complemental strand, 50061715 - 50061671
Alignment:
Q  192 aattgattctacttgaagttatgattagtagttttttattctaga 236  Q
    ||||||||||||||||||||| |||| ||||||||| ||||||||    
T  50061715 aattgattctacttgaagttaggatttgtagtttttgattctaga 50061671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 236
Target Start/End: Complemental strand, 41370095 - 41370053
Alignment:
Q  194 ttgattctacttgaagttatgattagtagttttttattctaga 236  Q
    ||||||||||||||||||| ||||  |||||||||||||||||    
T  41370095 ttgattctacttgaagttaggatttatagttttttattctaga 41370053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 185 - 238
Target Start/End: Original strand, 14596680 - 14596733
Alignment:
Q  185 ctttaagaattgattctacttgaagttatgattagtagttttttattctagaat 238  Q
    |||| |||||||||||||||||||| |||| || | ||||||| ||||||||||    
T  14596680 ctttcagaattgattctacttgaagctatgttttgcagtttttgattctagaat 14596733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 238
Target Start/End: Complemental strand, 18508765 - 18508677
Alignment:
Q  150 acatgtttgtttggtttgaagtagtattgatttttctttaagaattgattctacttgaagttatgattagtagttttttattctagaat 238  Q
    |||| |||| ||| ||| |||| |||||||||||   || |||||||||| |||||||| |||| |||  ||||||||||||| |||||    
T  18508765 acatatttgattgtttttaagttgtattgattttgtcttcagaattgattttacttgaaattattatttatagttttttattcgagaat 18508677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 212
Target Start/End: Complemental strand, 47514317 - 47514273
Alignment:
Q  168 aagtagtattgatttttctttaagaattgattctacttgaagtta 212  Q
    |||||| |||||||||||||  |||||||||| ||||||||||||    
T  47514317 aagtagaattgatttttcttgtagaattgattttacttgaagtta 47514273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 190 - 234
Target Start/End: Complemental strand, 25359663 - 25359619
Alignment:
Q  190 agaattgattctacttgaagttatgattagtagttttttattcta 234  Q
    |||||||||||||||||||||||  ||| ||||||||||||||||    
T  25359663 agaattgattctacttgaagttagaatttgtagttttttattcta 25359619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 142 - 209
Target Start/End: Complemental strand, 41115499 - 41115432
Alignment:
Q  142 tgattatgacatgtttgtttggtttgaagtagtattgatttttctttaagaattgattctacttgaag 209  Q
    ||||| |||||||||||  || ||| |||||| ||||||||| |||  ||||||||||||||||||||    
T  41115499 tgattttgacatgtttggatgttttaaagtagaattgattttgcttgtagaattgattctacttgaag 41115432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 185 - 238
Target Start/End: Complemental strand, 220698 - 220645
Alignment:
Q  185 ctttaagaattgattctacttgaagttatgattagtagttttttattctagaat 238  Q
    |||| |||||||||||||||||||| |||| || | ||||||| ||||||||||    
T  220698 ctttcagaattgattctacttgaagctatgttttgcagtttttgattctagaat 220645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 197 - 238
Target Start/End: Complemental strand, 36256092 - 36256051
Alignment:
Q  197 attctacttgaagttatgattagtagttttttattctagaat 238  Q
    ||||||||||||||||  ||| ||||||||||||||||||||    
T  36256092 attctacttgaagttagaattcgtagttttttattctagaat 36256051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University