View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2509_low_19 (Length: 231)
Name: NF2509_low_19
Description: NF2509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2509_low_19 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 13509293 - 13509081
Alignment:
| Q |
1 |
caatcaatttaacttttactttactacccccacggcagtttctgcaacaacattgcataaaaaattattattaccccgcctgggttgaggcaaaatggac |
100 |
Q |
| |
|
|||||||||||||||||| ||||| ||||||| | |||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
13509293 |
caatcaatttaacttttaatttacaacccccatgacagtttctgctacaacattgcataaaaaattattattaccccgcctgggttgtggcaaaatggac |
13509194 |
T |
|
| Q |
101 |
ggttttttgggttgattcgtttggatctatctacgaaagagtttccgagtaagcttaatcaaataatcaattccacattttgatgttgtttgttgctatg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
13509193 |
ggttttttgggttgattcgtttggatctatctacgaaagagtttccgagtaagcttaatcaaataatcaattccacattttgatgttgtctgttgctatg |
13509094 |
T |
|
| Q |
201 |
tattttagtatac |
213 |
Q |
| |
|
||||||||||||| |
|
|
| T |
13509093 |
tattttagtatac |
13509081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 13598823 - 13598611
Alignment:
| Q |
1 |
caatcaatttaacttttactttactacccccacggcagtttctgcaacaacattgcataaaaaattattattaccccgcctgggttgaggcaaaatggac |
100 |
Q |
| |
|
|||||||||||||||||| ||||| ||||||| | |||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
13598823 |
caatcaatttaacttttaatttacaacccccatgacagtttctgctacaacattgcataaaaaattattattaccccgcctgggttgtggcaaaatggac |
13598724 |
T |
|
| Q |
101 |
ggttttttgggttgattcgtttggatctatctacgaaagagtttccgagtaagcttaatcaaataatcaattccacattttgatgttgtttgttgctatg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
13598723 |
ggttttttgggttgattcgtttggatctatctacgaaagagtttccgagtaagcttaatcaaataatcaattccacattttgatgttgtctgttgctatg |
13598624 |
T |
|
| Q |
201 |
tattttagtatac |
213 |
Q |
| |
|
||||||||||||| |
|
|
| T |
13598623 |
tattttagtatac |
13598611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University