View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2509_low_2 (Length: 436)
Name: NF2509_low_2
Description: NF2509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2509_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 376; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 5 - 420
Target Start/End: Original strand, 26003184 - 26003598
Alignment:
| Q |
5 |
ttaatcttagcttcagatggattatgggaaaaggtatagaacttgaccaattaattgcgatgttaattataaattctttcaagaaatcacagttcaacta |
104 |
Q |
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| T |
26003184 |
ttaatcttagcttcagatggattatgggaaaaggtataggacttgaccaattaattgcgatgttaattataaattctttcaagaaatcacagttcaacta |
26003283 |
T |
|
| Q |
105 |
tagtttagtcttaacttagtaactgattaagtttctcttttcaatcttgttcaggttagtaatcaagaagcagtagatatagcacatccttattgtgcag |
204 |
Q |
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| T |
26003284 |
tagtttagtcttaacttagtaactgattaagtttctcttttcaatcttgttcaggttagtaatcaagaagcagtagatatagcacatccttattgtgcag |
26003383 |
T |
|
| Q |
205 |
ggagcaatagacaaggatccttccaagcttgtaagaaacttgtagatttatctgtatcgcgaggctctttcgatgatataagtgttatgatcatcaaact |
304 |
Q |
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| T |
26003384 |
ggagcaatagacaaggatccttcccagcttgtaagaaacttgtagatttatctgtatcgcgaggctctatcgacgatataagtgttatgatcatcaaact |
26003483 |
T |
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| Q |
305 |
acaaaactacatttgaagtttcattaaaacaaacacagacaactaacacgacaccagttataatttagtaaaatgaatgtaattacatgttcagtgcccg |
404 |
Q |
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| T |
26003484 |
acagaactacgtttgaagtttcattaatacaaacacagacgactaacacgacaccag-tataatttagtaaaatgaatgtaattacatgttcagtgcccg |
26003582 |
T |
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| Q |
405 |
atatcaatgtatgttg |
420 |
Q |
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| T |
26003583 |
atatcaatgtatgttg |
26003598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 1 - 323
Target Start/End: Original strand, 26017926 - 26018238
Alignment:
| Q |
1 |
ctttttaatcttagcttcagatggattatgggaaaaggtatagaacttgaccaattaattgcgatgttaattataaattctttcaagaaatcacagt--t |
98 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||| | ||||||||||| ||||| || ||| || |||| | | |
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| T |
26017926 |
ctttttaatcttagcttcagatggattatgggaaaaggtataggacttcatcaattaattgcaatgttcttt----------tcatgagatcaatttgct |
26018015 |
T |
|
| Q |
99 |
caactatagtttagtcttaacttagtaactgattaagtttctcttttcaatcttgttcaggttagtaatcaagaagcagtagatatagcacatccttatt |
198 |
Q |
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|||||||||| | | |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| | || ||||| | |
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| T |
26018016 |
caactatagt--actattaaacgagtaactgatttagtttctcttttcaatcttgttcaggttagtaatcaagaagctgtagatcttgctggtcctttat |
26018113 |
T |
|
| Q |
199 |
gtgcagggagcaatagacaaggatccttccaagcttgtaagaaacttgtagatttatctgtatcgcgaggctctttcgatgatataagtgttatgatcat |
298 |
Q |
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||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| || |
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| T |
26018114 |
gtgtagagagcaatagacaaggatccttccaagcttgtaagaaacttgtagatttatctgtatcgcgaggctctatcgatgatataagtgttatgataat |
26018213 |
T |
|
| Q |
299 |
caaactacaaaactacatttgaagt |
323 |
Q |
| |
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|||| |||||||||||||||||||| |
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| T |
26018214 |
caaattacaaaactacatttgaagt |
26018238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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