View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2509_low_3 (Length: 418)
Name: NF2509_low_3
Description: NF2509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2509_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 297; Significance: 1e-167; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 92 - 403
Target Start/End: Complemental strand, 21392510 - 21392198
Alignment:
| Q |
92 |
aagacttcaatctattggaaatagtcttagtgataatgtttggcaaataaaagtgatattaatgtttctaggaacattctcagaagtttgtgtggaattc |
191 |
Q |
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| T |
21392510 |
aagacttcaatctattggaaatagtcttagtgataatgtttggcaaataaaagtgatattaatgtttctaggaacattctcagaagtttgtgtggaattc |
21392411 |
T |
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| Q |
192 |
aagtattggaggtaagacatgtagagattagagaagatattttaatacaatataaggaaagggaagacacacgaaagaaataccaattttaaaggaaaat |
291 |
Q |
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| T |
21392410 |
aagtattggaggtaagacatgtagagattagagaagatattttaatacaatataaggaaagggaagacacacgaaagaaataccaattttaaaggaaaat |
21392311 |
T |
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| Q |
292 |
tttgatattaaatttggacacacatataaaaatacatttaatca-ttaaaatatacatataatctaaaagttttttctttctactatttctatttgtttg |
390 |
Q |
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| T |
21392310 |
tttgatattaaatttggacacacagataaaaatacatttaatcatttaaaatatacatataatttaaaagttttttctttctactatttctatttgtttg |
21392211 |
T |
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| Q |
391 |
aatttgtccaaat |
403 |
Q |
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| T |
21392210 |
aatttgtccaaat |
21392198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 16 - 103
Target Start/End: Complemental strand, 21392619 - 21392532
Alignment:
| Q |
16 |
gcaagcaacacgttataagtgattaatctattcgatatagatgcacttgggtattgattaacaatcataggaagataagacttcaatc |
103 |
Q |
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| T |
21392619 |
gcaagcaacacgttataagtgattaatctattcgatatacatgcacttgggtattgattaacaatcataggaagataagacttcaatc |
21392532 |
T |
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