View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2509_low_7 (Length: 327)

Name: NF2509_low_7
Description: NF2509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2509_low_7
NF2509_low_7
[»] chr7 (8 HSPs)
chr7 (91-315)||(17736943-17737167)
chr7 (16-253)||(17736285-17736522)
chr7 (91-257)||(17708706-17708872)
chr7 (107-257)||(16730588-16730738)
chr7 (91-243)||(17718530-17718682)
chr7 (91-253)||(17699597-17699759)
chr7 (91-253)||(16722583-16722745)
chr7 (208-257)||(17714184-17714233)
[»] chr3 (7 HSPs)
chr3 (98-199)||(46480224-46480325)
chr3 (107-191)||(5160717-5160801)
chr3 (98-200)||(46491137-46491239)
chr3 (98-180)||(51944321-51944403)
chr3 (98-191)||(5156676-5156769)
chr3 (99-188)||(46498380-46498469)
chr3 (98-187)||(46544915-46545004)


Alignment Details
Target: chr7 (Bit Score: 213; Significance: 1e-117; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 91 - 315
Target Start/End: Original strand, 17736943 - 17737167
Alignment:
Q  91 tccaatcgactttgttgctgaccacccttttttatttctgatcagagaagagtttagtggaaccatactctttgttggaaaggtggtcaatcctcttgat 190  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17736943 tccaatcgactttgtagctgaccacccttttttatttctgatcagagaagagtttagtggaaccatactctttgttggaaaggtggtcaatcctcttgat 17737042  T
Q  191 ggttgatttttgaattccatagtatcttaaatatgttttctaagcaacccatttttatattttaatatataaatggggtaaatgatgtcctattccatat 290  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  17737043 ggttgatttttgaattccatagtatcttaaatatgttttctaagcaacccatttttatattttaatatataaatggggtaaattatgtcctattccatat 17737142  T
Q  291 tcgtatactatctaaaatatatttt 315  Q
    ||||||||||||| |||||||||||    
T  17737143 tcgtatactatctgaaatatatttt 17737167  T

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Target: chr7; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 16 - 253
Target Start/End: Original strand, 17736285 - 17736522
Alignment:
Q  16 agaaggtacgatagctgcagcgacagcccgtggcagtacaggcggcgctgctccatttcgtctnnnnnnnnnnnntccaatcgactttgttgctgaccac 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            |||||||||||||||||||||||||    
T  17736285 agaaggtacgatagctgcagcgacagcccgtggcagtacaggcggcgctgctccatttcgtctccctccgccccctccaatcgactttgttgctgaccac 17736384  T
Q  116 ccttttttatttctgatcagagaagagtttagtggaaccatactctttgttggaaaggtggtcaatcctcttgatggttgatttttgaattccatagtat 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  17736385 ccttttttatttctgatcagagaagagtttagtggaaccatactctttgttggaaaggtggtcaatcctcttgatggttgattgttgaattccatagtat 17736484  T
Q  216 cttaaatatgttttctaagcaacccatttttatatttt 253  Q
    || |||||||||||||||  |||||||||| |||||||    
T  17736485 ctcaaatatgttttctaaataacccattttcatatttt 17736522  T

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Target: chr7; HSP #3
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 91 - 257
Target Start/End: Original strand, 17708706 - 17708872
Alignment:
Q  91 tccaatcgactttgttgctgaccacccttttttatttctgatcagagaagagtttagtggaaccatactctttgttggaaaggtggtcaatcctcttgat 190  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17708706 tccaatggactttgttgctgaccacccttttttatttctgatcagagaagagtttagtggaaccatactctttgttggaaaggtggtcaatcctcttgat 17708805  T
Q  191 ggttgatttttgaattccatagtatcttaaatatgttttctaagcaacccatttttatattttaata 257  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17708806 ggttgattgttgaattccatagtatcttaaatatgttttctaagcaacccatttttatattttaata 17708872  T

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Target: chr7; HSP #4
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 107 - 257
Target Start/End: Original strand, 16730588 - 16730738
Alignment:
Q  107 gctgaccacccttttttatttctgatcagagaagagtttagtggaaccatactctttgttggaaaggtggtcaatcctcttgatggttgatttttgaatt 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  16730588 gctgaccacccttttttatttctgatcagagaagagtttagtggaaccatactctttgttggaaaggtggtcaatcctcttgatggttgattgttgaatt 16730687  T
Q  207 ccatagtatcttaaatatgttttctaagcaacccatttttatattttaata 257  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16730688 ccatagtatcttaaatatgttttctaagcaacccatttttatattttaata 16730738  T

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Target: chr7; HSP #5
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 91 - 243
Target Start/End: Original strand, 17718530 - 17718682
Alignment:
Q  91 tccaatcgactttgttgctgaccacccttttttatttctgatcagagaagagtttagtggaaccatactctttgttggaaaggtggtcaatcctcttgat 190  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17718530 tccaatcgactttgtagctgaccacccttttttatttctgatcagagaagagtttagtggaaccatactctttgttggaaaggtggtcaatcctcttgat 17718629  T
Q  191 ggttgatttttgaattccatagtatcttaaatatgttttctaagcaacccatt 243  Q
    |||||||| ||||||||||||| ||||||||||||||||||||||||||||||    
T  17718630 ggttgattcttgaattccatagcatcttaaatatgttttctaagcaacccatt 17718682  T

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Target: chr7; HSP #6
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 91 - 253
Target Start/End: Original strand, 17699597 - 17699759
Alignment:
Q  91 tccaatcgactttgttgctgaccacccttttttatttctgatcagagaagagtttagtggaaccatactctttgttggaaaggtggtcaatcctcttgat 190  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17699597 tccaatcgactttgtagctgaccacccttttttatttctgatcagagaagagtttagtggaaccatactctttgttggaaaggtggtcaatcctcttgat 17699696  T
Q  191 ggttgatttttgaattccatagtatcttaaatatgttttctaagcaacccatttttatatttt 253  Q
    |||| ||| |||||||||||||||||| |||||||||||||||  || |||||||||||||||    
T  17699697 ggttaattgttgaattccatagtatctcaaatatgttttctaaataatccatttttatatttt 17699759  T

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Target: chr7; HSP #7
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 91 - 253
Target Start/End: Original strand, 16722583 - 16722745
Alignment:
Q  91 tccaatcgactttgttgctgaccacccttttttatttctgatcagagaagagtttagtggaaccatactctttgttggaaaggtggtcaatcctcttgat 190  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16722583 tccaatggactttgttgctgaccacccttttttatttctgatcagagaagagtttagtggaaccatactctttgttggaaaggtggtcaatcctcttgat 16722682  T
Q  191 ggttgatttttgaattccatagtatcttaaatatgttttctaagcaacccatttttatatttt 253  Q
    |||| ||| |||||||||||||||||| |||||||||||||||  || ||||||| |||||||    
T  16722683 ggttaattgttgaattccatagtatctcaaatatgttttctaaataaaccattttaatatttt 16722745  T

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Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 208 - 257
Target Start/End: Original strand, 17714184 - 17714233
Alignment:
Q  208 catagtatcttaaatatgttttctaagcaacccatttttatattttaata 257  Q
    |||||||||| |||||||| || |||||||||||||||||| ||||||||    
T  17714184 catagtatctcaaatatgtcttataagcaacccatttttatgttttaata 17714233  T

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Target: chr3 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 98 - 199
Target Start/End: Original strand, 46480224 - 46480325
Alignment:
Q  98 gactttgttgctgaccacccttttttatttctgatcagagaagagtttagtggaaccatactctttgttggaaaggtggtcaatcctcttgatggttgat 197  Q
    |||||||| |||||||||||||| |||||| |||| |||||||| || |  ||||| ||  ||||||||||| ||||| |||||||||||| ||| ||||    
T  46480224 gactttgtagctgaccaccctttcttatttatgattagagaagacttgaccggaacaatcatctttgttggacaggtgctcaatcctcttgctgggtgat 46480323  T
Q  198 tt 199  Q
    ||    
T  46480324 tt 46480325  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 107 - 191
Target Start/End: Original strand, 5160717 - 5160801
Alignment:
Q  107 gctgaccacccttttttatttctgatcagagaagagtttagtggaaccatactctttgttggaaaggtggtcaatcctcttgatg 191  Q
    |||||||||||||| ||||||||||| |||||||| |  | ||||||||| |||||||||||| | ||  |||||||||||||||    
T  5160717 gctgaccaccctttcttatttctgattagagaagattggactggaaccattctctttgttggacaagtactcaatcctcttgatg 5160801  T

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Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 98 - 200
Target Start/End: Original strand, 46491137 - 46491239
Alignment:
Q  98 gactttgttgctgaccacccttttttatttctgatcagagaagagtttagtggaaccatactctttgttggaaaggtggtcaatcctcttgatggttgat 197  Q
    |||||||| |||| ||||||||| || ||| |||| |||||||| || | |||||| ||  ||||||||||| ||||| |||||||||||| ||| ||||    
T  46491137 gactttgtggctggccaccctttcttgtttatgattagagaagaattgactggaacaatcatctttgttggacaggtgttcaatcctcttgctgggtgat 46491236  T
Q  198 ttt 200  Q
    |||    
T  46491237 ttt 46491239  T

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Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 98 - 180
Target Start/End: Original strand, 51944321 - 51944403
Alignment:
Q  98 gactttgttgctgaccacccttttttatttctgatcagagaagagtttagtggaaccatactctttgttggaaaggtggtcaa 180  Q
    |||||||| |||||||||||||| ||||||||||| |||||||| || | |||||| ||  ||||||||||| ||||| ||||    
T  51944321 gactttgtagctgaccaccctttcttatttctgattagagaagatttgactggaacaatcatctttgttggacaggtgctcaa 51944403  T

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Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 98 - 191
Target Start/End: Original strand, 5156676 - 5156769
Alignment:
Q  98 gactttgttgctgaccacccttttttatttctgatcagagaagagtttagtggaaccatactctttgttggaaaggtggtcaatcctcttgatg 191  Q
    |||||||| ||||| |||||||| |||||||| || |||||| | |  | ||||||||| |||||||||||| | ||| ||||||| |||||||    
T  5156676 gactttgtagctgatcaccctttcttatttctaattagagaaaactcgactggaaccattctctttgttggacaagtgctcaatccacttgatg 5156769  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 188
Target Start/End: Original strand, 46498380 - 46498469
Alignment:
Q  99 actttgttgctgaccacccttttttatttctgatcagagaagagtttagtggaaccatactctttgttggaaaggtggtcaatcctcttg 188  Q
    ||||||| ||||||||||| || |||||| | ||||||||||| || |  ||||| ||  ||||||||||  ||||| ||||||||||||    
T  46498380 actttgtagctgaccacccattcttatttattatcagagaagatttgaccggaactatcgtctttgttgggcaggtgctcaatcctcttg 46498469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 187
Target Start/End: Original strand, 46544915 - 46545004
Alignment:
Q  98 gactttgttgctgaccacccttttttatttctgatcagagaagagtttagtggaaccatactctttgttggaaaggtggtcaatcctctt 187  Q
    |||||||| |||||||||||||| || ||| ||||||||||||| ||   ||||||  |||||||| ||||| | ||  |||||||||||    
T  46544915 gactttgtagctgaccaccctttcttgtttttgatcagagaagatttgtctggaacggtactctttattggacaagttctcaatcctctt 46545004  T

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