View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2509_low_9 (Length: 300)
Name: NF2509_low_9
Description: NF2509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2509_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 18 - 290
Target Start/End: Complemental strand, 2700885 - 2700609
Alignment:
| Q |
18 |
aaaacttgtttcaatggtctcaatgctttatcaggtaaccttattaactttagttgttttgtgagtatgttttacaaaacatagatgtttttcaataaaa |
117 |
Q |
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| T |
2700885 |
aaaacttgtttcaatggtctcaatgctttatcaggtaaccttattaactttagttgttttgtgagtatgttttacaaaacatagatgtttttcaataaaa |
2700786 |
T |
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| Q |
118 |
tttaaattagannnnnnngttgttattgttgttgttataattaattggcaattattagatttgtttaacctaaaaccatagttttgtgatgctaattatg |
217 |
Q |
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| T |
2700785 |
tttaaattagatttttttgttgttattgttgttgttatatttaattggcaattattagatttgtttagcctaaaaccatagttttgtgatgctaattatg |
2700686 |
T |
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| Q |
218 |
ttggtccttaattagtaaaagatata----taatgtgtggtgctatactcttctatgggctatcttcttgtcctatg |
290 |
Q |
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| T |
2700685 |
ttggtccttaattagtaaaagatatataattaatgtgtggtgctatactcttgtatgtgctatcttgttgtcctatg |
2700609 |
T |
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Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 79
Target Start/End: Complemental strand, 10843443 - 10843382
Alignment:
| Q |
18 |
aaaacttgtttcaatggtctcaatgctttatcaggtaaccttattaactttagttgttttgt |
79 |
Q |
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| T |
10843443 |
aaaacttgtttcaatggtctcaatgctttaacaggtaaccttattaaccctagttgttttgt |
10843382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 156 - 249
Target Start/End: Complemental strand, 10843325 - 10843231
Alignment:
| Q |
156 |
aattaattggcaattattagatttgtttaacctaaaaccatagttttgtgatgctaattatgttggtcc-ttaattagtaaaagatatataatgt |
249 |
Q |
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| T |
10843325 |
aattaattgacagttaatggattagattagcctaaaaccagagatttgtgatgataattatgttggtccacaaattaataaaagatatataatgt |
10843231 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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