View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2510_high_1 (Length: 560)
Name: NF2510_high_1
Description: NF2510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2510_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 485; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 9 - 542
Target Start/End: Complemental strand, 46449241 - 46448707
Alignment:
| Q |
9 |
gacatcatcaaacaattcataggtctctggagctggttgaagaagagatatgattgtggttgcatcaagtgcatgtgttgaatgcttgagatatctaata |
108 |
Q |
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| T |
46449241 |
gacatcatcaaacaattcataggtctctggagctggttgaagaagagatatgattgtggttgcatcaagtgcatgtgttgaatgcttgagatatctaata |
46449142 |
T |
|
| Q |
109 |
atctgatatgtagttgaactatctaaaccagttgatatctcatccatgaacagcactcttgctggtccaattagtaattcgcctgtaaatcagacatcaa |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46449141 |
atctgatatgtagttgaactatctaaaccagttgatatctcatccatgaacagcactcttgctggtccaattagtaattcgcctgtaaatcagacatcaa |
46449042 |
T |
|
| Q |
209 |
ctgattagcatattgcaaatgtatctaaggcgctagtacaaaagacagggttacacactagtacgcttcactaacctgttgtaagccgcttcttttgtcc |
308 |
Q |
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| T |
46449041 |
ctgattagcatattgcaaatgtatctaaggcgctagtacaaaagacagggttacacactagtacgcttcactaacctgttgtaagccgcttcttttgtcc |
46448942 |
T |
|
| Q |
309 |
tcccgagattcccttgagcatttcatcccccaccaatgtgtcaccacacatgtccaaacctaatatctttgtgagaaatattttcgtacttagaactaaa |
408 |
Q |
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| T |
46448941 |
tcccgagattcccttgagcatttcatcccccaccaatgtgtcaccacacatgtccaaacctaatatctttgtgagaaatattttcgtacttagaactaaa |
46448842 |
T |
|
| Q |
409 |
caatgaaataatcatatacatacacacataattgagcttatgaata-nnnnnnnagataacttgccaaagaagttaatcacatgttggaattaggctctg |
507 |
Q |
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| T |
46448841 |
caatgaaataatcatatacatacacacataattgagcttatgaatattttttttagataacttgccaaagaagttaatcacatgttggaattaggctctg |
46448742 |
T |
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| Q |
508 |
gggannnnnnnacttctttattagatgtccacaat |
542 |
Q |
| |
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| T |
46448741 |
gggatttttttacttctttattagatgtccacaat |
46448707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 121 - 176
Target Start/End: Original strand, 42135760 - 42135815
Alignment:
| Q |
121 |
gttgaactatctaaaccagttgatatctcatccatgaacagcactcttgctggtcc |
176 |
Q |
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| T |
42135760 |
gttgaactatctaatcctgttgatatttcatccatgaacagtacttttgctggtcc |
42135815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 109 - 160
Target Start/End: Original strand, 43460402 - 43460453
Alignment:
| Q |
109 |
atctgatatgtagttgaactatctaaaccagttgatatctcatccatgaaca |
160 |
Q |
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| T |
43460402 |
atctgatatgttgtggaactatcaagaccagttgatatttcatccatgaaca |
43460453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 116 - 178
Target Start/End: Complemental strand, 49770278 - 49770216
Alignment:
| Q |
116 |
atgtagttgaactatctaaaccagttgatatctcatccatgaacagcactcttgctggtccaa |
178 |
Q |
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|||| |||||||| || |||||||| ||||| || |||||||| ||| ||||||||||||||| |
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| T |
49770278 |
atgttgttgaactgtccaaaccagtcgatatttcgtccatgaaaagcgctcttgctggtccaa |
49770216 |
T |
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