View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2510_high_10 (Length: 376)

Name: NF2510_high_10
Description: NF2510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2510_high_10
NF2510_high_10
[»] chr7 (21 HSPs)
chr7 (157-365)||(48140439-48140647)
chr7 (1-188)||(48140260-48140447)
chr7 (1-105)||(19302471-19302576)
chr7 (17-100)||(48470117-48470201)
chr7 (143-241)||(35169993-35170089)
chr7 (12-102)||(46078167-46078258)
chr7 (33-98)||(5947330-5947396)
chr7 (1-52)||(21568457-21568508)
chr7 (21-98)||(4970707-4970785)
chr7 (33-75)||(18765373-18765415)
chr7 (1-75)||(19022524-19022598)
chr7 (17-75)||(33601349-33601407)
chr7 (26-102)||(38138403-38138480)
chr7 (16-75)||(27863664-27863723)
chr7 (16-102)||(36517649-36517736)
chr7 (21-104)||(44989587-44989670)
chr7 (140-223)||(46936954-46937037)
chr7 (140-233)||(24547667-24547760)
chr7 (40-99)||(17944257-17944317)
chr7 (166-206)||(19020305-19020345)
chr7 (1-57)||(27288004-27288060)
[»] chr3 (23 HSPs)
chr3 (141-255)||(11092827-11092940)
chr3 (1-90)||(31365111-31365201)
chr3 (17-93)||(584119-584196)
chr3 (1-90)||(31365232-31365322)
chr3 (17-102)||(39980802-39980888)
chr3 (17-93)||(24085258-24085335)
chr3 (1-94)||(20880533-20880627)
chr3 (17-92)||(21367740-21367816)
chr3 (23-97)||(47132397-47132470)
chr3 (44-103)||(49556964-49557024)
chr3 (39-97)||(20170630-20170689)
chr3 (17-97)||(22882-22963)
chr3 (141-214)||(8246273-8246346)
chr3 (20-92)||(18405752-18405825)
chr3 (6-75)||(30443955-30444024)
chr3 (17-45)||(201664-201692)
chr3 (17-61)||(402495-402539)
chr3 (140-255)||(2101190-2101306)
chr3 (141-185)||(3448525-3448569)
chr3 (39-75)||(3845502-3845538)
chr3 (17-96)||(9832672-9832752)
chr3 (21-99)||(42799880-42799960)
chr3 (17-61)||(43046738-43046782)
[»] chr1 (32 HSPs)
chr1 (1-98)||(2295153-2295251)
chr1 (17-105)||(38247400-38247489)
chr1 (141-230)||(41187346-41187435)
chr1 (17-94)||(37617384-37617462)
chr1 (24-92)||(2777971-2778040)
chr1 (1-95)||(3233933-3234028)
chr1 (5-99)||(33186367-33186462)
chr1 (16-98)||(43230687-43230770)
chr1 (7-92)||(5720988-5721074)
chr1 (140-190)||(16979580-16979630)
chr1 (6-64)||(49938809-49938867)
chr1 (17-97)||(473236-473317)
chr1 (142-275)||(2181793-2181926)
chr1 (141-190)||(4274444-4274493)
chr1 (6-98)||(14576569-14576662)
chr1 (17-105)||(34795354-34795443)
chr1 (22-102)||(36872806-36872887)
chr1 (33-100)||(2295280-2295348)
chr1 (33-104)||(14385702-14385774)
chr1 (33-100)||(34952291-34952359)
chr1 (17-61)||(38001668-38001712)
chr1 (174-241)||(3131679-3131746)
chr1 (46-100)||(15477655-15477710)
chr1 (1-56)||(51929497-51929552)
chr1 (141-223)||(3242091-3242173)
chr1 (17-75)||(29904824-29904882)
chr1 (33-75)||(33204333-33204375)
chr1 (21-94)||(50644174-50644248)
chr1 (11-52)||(4445774-4445815)
chr1 (38-102)||(28287893-28287958)
chr1 (17-57)||(7941679-7941719)
chr1 (17-61)||(9572054-9572098)
[»] chr2 (30 HSPs)
chr2 (139-255)||(10231797-10231913)
chr2 (33-104)||(15305763-15305835)
chr2 (17-102)||(42659122-42659208)
chr2 (6-102)||(30331813-30331910)
chr2 (141-273)||(2097380-2097512)
chr2 (41-100)||(7928211-7928271)
chr2 (1-81)||(43279460-43279542)
chr2 (6-75)||(15757597-15757666)
chr2 (33-101)||(42868393-42868462)
chr2 (33-104)||(11863990-11864061)
chr2 (17-99)||(32592659-32592744)
chr2 (141-224)||(35991276-35991359)
chr2 (32-100)||(3312165-3312234)
chr2 (39-75)||(9174910-9174946)
chr2 (11-74)||(32837389-32837453)
chr2 (17-98)||(31744371-31744453)
chr2 (21-75)||(41851612-41851666)
chr2 (39-95)||(27317025-27317082)
chr2 (21-97)||(27317456-27317533)
chr2 (141-190)||(29933510-29933559)
chr2 (33-92)||(33319737-33319795)
chr2 (145-190)||(41733989-41734034)
chr2 (17-97)||(44590097-44590178)
chr2 (33-100)||(4607014-4607082)
chr2 (215-275)||(13166084-13166144)
chr2 (36-98)||(15370238-15370302)
chr2 (21-65)||(16451195-16451239)
chr2 (17-72)||(36125434-36125487)
chr2 (17-61)||(36534841-36534885)
chr2 (17-95)||(43529776-43529856)
[»] chr8 (27 HSPs)
chr8 (20-104)||(43717843-43717928)
chr8 (17-100)||(30251367-30251451)
chr8 (6-95)||(36963272-36963362)
chr8 (6-75)||(26771327-26771396)
chr8 (1-74)||(28763425-28763498)
chr8 (1-97)||(43045641-43045738)
chr8 (1-101)||(35643900-35644001)
chr8 (18-98)||(38648425-38648506)
chr8 (33-99)||(38602416-38602483)
chr8 (1-75)||(35749509-35749583)
chr8 (18-102)||(6882001-6882083)
chr8 (36-94)||(9130238-9130297)
chr8 (6-61)||(10758210-10758265)
chr8 (6-88)||(18133718-18133801)
chr8 (166-233)||(30011717-30011784)
chr8 (6-91)||(12976274-12976360)
chr8 (33-75)||(18591915-18591957)
chr8 (144-190)||(24827287-24827333)
chr8 (6-99)||(35534527-35534621)
chr8 (33-94)||(44792745-44792807)
chr8 (6-102)||(15180602-15180698)
chr8 (141-241)||(26762887-26762990)
chr8 (208-241)||(29705914-29705947)
chr8 (32-100)||(29818857-29818926)
chr8 (1-93)||(40859703-40859795)
chr8 (33-100)||(12496985-12497053)
chr8 (20-76)||(27754479-27754535)
[»] chr4 (20 HSPs)
chr4 (1-97)||(54426100-54426197)
chr4 (1-94)||(39603090-39603183)
chr4 (1-99)||(21731570-21731669)
chr4 (140-275)||(1132156-1132290)
chr4 (17-98)||(17822780-17822862)
chr4 (1-93)||(15173223-15173316)
chr4 (36-100)||(44797972-44798037)
chr4 (20-95)||(8705017-8705093)
chr4 (33-100)||(18815112-18815180)
chr4 (17-98)||(26780-26862)
chr4 (140-241)||(21570856-21570958)
chr4 (17-98)||(39691064-39691146)
chr4 (6-75)||(22030265-22030334)
chr4 (33-100)||(24169352-24169420)
chr4 (1-100)||(42403936-42404035)
chr4 (17-95)||(13126494-13126573)
chr4 (138-221)||(45387238-45387321)
chr4 (33-101)||(35571543-35571612)
chr4 (17-96)||(40830947-40831027)
chr4 (17-61)||(49940120-49940164)
[»] chr5 (25 HSPs)
chr5 (17-96)||(16937800-16937880)
chr5 (17-104)||(34102222-34102310)
chr5 (17-107)||(12433079-12433170)
chr5 (17-99)||(10640026-10640109)
chr5 (19-100)||(43300953-43301035)
chr5 (20-95)||(32941545-32941622)
chr5 (17-97)||(32942667-32942748)
chr5 (139-224)||(43051535-43051618)
chr5 (17-95)||(1773024-1773101)
chr5 (17-100)||(7705911-7705995)
chr5 (212-275)||(7705316-7705379)
chr5 (32-102)||(25461559-25461629)
chr5 (33-75)||(12425662-12425704)
chr5 (182-224)||(16252643-16252685)
chr5 (33-106)||(32372701-32372775)
chr5 (17-67)||(39248171-39248221)
chr5 (19-73)||(41981644-41981698)
chr5 (33-98)||(42100400-42100466)
chr5 (17-62)||(1464972-1465017)
chr5 (17-93)||(9107163-9107240)
chr5 (17-58)||(16457935-16457976)
chr5 (33-101)||(34736439-34736508)
chr5 (11-72)||(35445786-35445847)
chr5 (146-182)||(10992035-10992071)
chr5 (23-75)||(15015922-15015974)
[»] chr6 (11 HSPs)
chr6 (17-72)||(9559364-9559419)
chr6 (17-101)||(6538587-6538672)
chr6 (3-94)||(4163212-4163304)
chr6 (3-94)||(4224833-4224925)
chr6 (33-102)||(848078-848147)
chr6 (21-75)||(33074895-33074949)
chr6 (17-78)||(30536576-30536637)
chr6 (21-94)||(10645304-10645378)
chr6 (6-98)||(30926581-30926674)
chr6 (18-67)||(34009447-34009496)
chr6 (41-100)||(35069525-35069585)
[»] scaffold0057 (1 HSPs)
scaffold0057 (17-71)||(24694-24748)
[»] scaffold0449 (1 HSPs)
scaffold0449 (139-224)||(10587-10670)


Alignment Details
Target: chr7 (Bit Score: 209; Significance: 1e-114; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 157 - 365
Target Start/End: Original strand, 48140439 - 48140647
Alignment:
Q  157 cactgtcaatgtaaaatgttttacactgtcaacacattataatcaatcatgtgtatgactttagaagttgttatgataaaagtcagatgcttctaatgac 256  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48140439 cactgtcaatgtaaaatgttttacactgtcaacacattataatcaatcatgtgtatgactttagaagttgttatgataaaagtcagatgcttctaatgac 48140538  T
Q  257 ttgacaattatgattgatttatggtgtttatgaattaaattataataattattatatgttgtgtatttgagtgtgaggcttatgtttggggcttcataat 356  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48140539 ttgacaattatgattgatttatggtgtttatgaattaaattataataattattatatgttgtgtatttgagtgtgaggcttatgtttggggcttcataat 48140638  T
Q  357 tcattgatg 365  Q
    |||||||||    
T  48140639 tcattgatg 48140647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 1 - 188
Target Start/End: Original strand, 48140260 - 48140447
Alignment:
Q  1 ttataaaaattgttacaagctgttttcatacattctcccaaacagtctcacagaacttatgccaatagataagctatataagccaatccaaacaggccct 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || ||||||||||||||||||||||||    
T  48140260 ttataaaaattgttacaagctgttttcatacattctcccaaacagtctcacataacttatgccaatagataaactctataagccaatccaaacaggccct 48140359  T
Q  101 aagtatggtttcttattaatgttattattaattacgattagagtttaattttgatgcactgtcaatgtaaaatgttttacactgtcaa 188  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48140360 aagtatggtttcttattaatgttattattaattacgattagagtttaattttgatgcactgtcaatgtaaaatgttttacactgtcaa 48140447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 19302576 - 19302471
Alignment:
Q  1 ttataaaaattgttacaagctgttttcatacattctcccaaacagtctcacagaacttatgccaatagataagct-atataagccaatccaaacaggccc 99  Q
    |||| |||||||| | |||||||||||||| ||||||||||| | ||||||| |||||||| || |||||||||| | ||||| |||| ||||||||  |    
T  19302576 ttatgaaaattgtcataagctgttttcataaattctcccaaatattctcacaaaacttatgtcagtagataagctcaaataagtcaattcaaacaggttc 19302477  T
Q  100 taagta 105  Q
    ||||||    
T  19302476 taagta 19302471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 17 - 100
Target Start/End: Original strand, 48470117 - 48470201
Alignment:
Q  17 aagctgttttcatacattctcccaaacagtctcacagaacttatgccaatagataagct-atataagccaatccaaacaggccct 100  Q
    ||||||||||||||  |||||||||||| ||||| | |||||||| | ||||||||||| | |||||||||||| ||||||||||    
T  48470117 aagctgttttcataagttctcccaaacaatctcataaaacttatgtctatagataagctcaaataagccaatcctaacaggccct 48470201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 143 - 241
Target Start/End: Complemental strand, 35170089 - 35169993
Alignment:
Q  143 gtttaattttgatgcactgtcaatgtaaaatgttttacactgtcaacacattataatcaatcatgtgtatgactttagaagttgttatgataaaagtca 241  Q
    |||||| |||||| ||| ||||||| |||   |||||||||||||||| || |||| ||||||||||  ||||||||||||| |||||||| |||||||    
T  35170089 gtttaactttgatacaccgtcaatgcaaatacttttacactgtcaacaaatcataaccaatcatgtg--tgactttagaagtagttatgattaaagtca 35169993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 102
Target Start/End: Original strand, 46078167 - 46078258
Alignment:
Q  12 gttacaagctgttttcatacattctcccaaacagtctcacagaacttatgccaatagataagct-atataagccaatccaaacaggccctaa 102  Q
    |||| ||||||||||||||  ||||||| ||||  | |||| |||||||| ||||||||||||| | |||||||||||||| ||||||||||    
T  46078167 gttataagctgttttcataacttctcccgaacaaacccacaaaacttatgtcaatagataagctaaaataagccaatccaaccaggccctaa 46078258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 33 - 98
Target Start/End: Original strand, 5947330 - 5947396
Alignment:
Q  33 ttctcccaaacagtctcacagaacttatgccaatagataagct-atataagccaatccaaacaggcc 98  Q
    |||| ||||||||||||| | ||||||| |||||||||||||| | |||||||||||||||||||||    
T  5947330 ttcttccaaacagtctcataaaacttataccaatagataagctcaaataagccaatccaaacaggcc 5947396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 21568508 - 21568457
Alignment:
Q  1 ttataaaaattgttacaagctgttttcatacattctcccaaacagtctcaca 52  Q
    |||| |||||||||| ||||||||||||||  ||||||||||||||||||||    
T  21568508 ttatgaaaattgttataagctgttttcataagttctcccaaacagtctcaca 21568457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 98
Target Start/End: Complemental strand, 4970785 - 4970707
Alignment:
Q  21 tgttttcatacattctcccaaacagtctcacagaacttatgccaatagataagct-atataagccaatccaaacaggcc 98  Q
    ||||||||||  ||||||||||||||||||||  ||||||| ||  ||||||||| | ||||| |||||||||||||||    
T  4970785 tgttttcataagttctcccaaacagtctcacaagacttatgtcacgagataagctcaaataagtcaatccaaacaggcc 4970707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 33 - 75
Target Start/End: Original strand, 18765373 - 18765415
Alignment:
Q  33 ttctcccaaacagtctcacagaacttatgccaatagataagct 75  Q
    |||||||||||||||||||| |||||||| |||||||||||||    
T  18765373 ttctcccaaacagtctcacaaaacttatgtcaatagataagct 18765415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 19022598 - 19022524
Alignment:
Q  1 ttataaaaattgttacaagctgttttcatacattctcccaaacagtctcacagaacttatgccaatagataagct 75  Q
    |||| |||||||| | ||| |||||||||| ||||||||||||| ||||||| |||| ||| || ||||||||||    
T  19022598 ttatgaaaattgtcataagttgttttcataaattctcccaaacaatctcacaaaactcatgtcagtagataagct 19022524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 75
Target Start/End: Complemental strand, 33601407 - 33601349
Alignment:
Q  17 aagctgttttcatacattctcccaaacagtctcacagaacttatgccaatagataagct 75  Q
    ||||||||||||||  |||||  ||| ||||||||| ||||||||||||||||||||||    
T  33601407 aagctgttttcataagttctcgaaaagagtctcacaaaacttatgccaatagataagct 33601349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 26 - 102
Target Start/End: Complemental strand, 38138480 - 38138403
Alignment:
Q  26 tcatacattctcccaaacagtctcacagaacttatgccaatagataagct-atataagccaatccaaacaggccctaa 102  Q
    ||||| |||||| ||  ||||||||||||| |||| |||||||||||||| | ||||| || ||||||||||||||||    
T  38138480 tcataaattctctcactcagtctcacagaatttattccaatagataagctcaaataagtcattccaaacaggccctaa 38138403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 27863723 - 27863664
Alignment:
Q  16 caagctgttttcatacattctcccaaacagtctcacagaacttatgccaatagataagct 75  Q
    |||||||||||||||  ||||| |||| ||||||||| ||||||||||| | ||||||||    
T  27863723 caagctgttttcataagttctctcaaatagtctcacaaaacttatgccagtggataagct 27863664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 16 - 102
Target Start/End: Original strand, 36517649 - 36517736
Alignment:
Q  16 caagctgttttcatacattctcccaaacagtctcacagaacttatgccaatagataagct-atataagccaatccaaacaggccctaa 102  Q
    ||||||||||| |||  |||||||||||||||| | | ||||||||||| ||| |||||| | ||||   ||||||||||||||||||    
T  36517649 caagctgttttaataagttctcccaaacagtcttagaaaacttatgccagtagctaagctcaaataaatgaatccaaacaggccctaa 36517736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 21 - 104
Target Start/End: Complemental strand, 44989670 - 44989587
Alignment:
Q  21 tgttttcatacattctcccaaacagtctcacagaacttatgccaatagataagctatataagccaatccaaacaggccctaagt 104  Q
    ||||||||||  || ||||||||||||||||| ||||||||| |   ||||| ||  |||||||||| |||||| |||||||||    
T  44989670 tgttttcataagttttcccaaacagtctcacaaaacttatgctaccggataaactcaataagccaattcaaacatgccctaagt 44989587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 140 - 223
Target Start/End: Original strand, 46936954 - 46937037
Alignment:
Q  140 agagtttaattttgatgcactgtcaatgtaaaatgttttacactgtcaacacattataatcaatcatgtgtatgactttagaag 223  Q
    ||||||||||||||||||||| |   ||||||| ||||||   |||||||| || | |||||||||| ||| ||||||||||||    
T  46936954 agagtttaattttgatgcactcttggtgtaaaaagttttatcgtgtcaacaaatcacaatcaatcatatgtgtgactttagaag 46937037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 140 - 233
Target Start/End: Original strand, 24547667 - 24547760
Alignment:
Q  140 agagtttaattttgatgcactgtcaatgtaaaatgttttacactgtcaacacattataatcaatcatgtgtatgactttagaagttgttatgat 233  Q
    ||||||| | |||||| ||| |||| ||||||| ||||||||||||||| | || | || ||||||| | | ||| ||||||||| ||||||||    
T  24547667 agagtttgaatttgatacaccgtcagtgtaaaaagttttacactgtcaataaatcacaaccaatcatatctgtgattttagaagtagttatgat 24547760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 40 - 99
Target Start/End: Complemental strand, 17944317 - 17944257
Alignment:
Q  40 aaacagtctcacagaacttatgccaatagataagc-tatataagccaatccaaacaggccc 99  Q
    ||||||||||||| | ||||||||| ||||||||| || ||||| || |||||||||||||    
T  17944317 aaacagtctcacaaagcttatgccagtagataagcttaaataagtcactccaaacaggccc 17944257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 166 - 206
Target Start/End: Complemental strand, 19020345 - 19020305
Alignment:
Q  166 tgtaaaatgttttacactgtcaacacattataatcaatcat 206  Q
    |||||||||||||||| ||||||||||||| ||||| ||||    
T  19020345 tgtaaaatgttttacattgtcaacacattacaatcattcat 19020305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 27288004 - 27288060
Alignment:
Q  1 ttataaaaattgttacaagctgttttcatacattctcccaaacagtctcacagaact 57  Q
    |||| |||||||||| ||||||||||||||  |||| ||||| ||||||||| ||||    
T  27288004 ttatgaaaattgttataagctgttttcataagttcttccaaatagtctcacaaaact 27288060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 2e-22; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 141 - 255
Target Start/End: Complemental strand, 11092940 - 11092827
Alignment:
Q  141 gagtttaattttgatgcactgtcaatgtaaaatgttttacactgtcaacacattataatcaatcatgtgtatgactttagaagttgttatgataaaagtc 240  Q
    |||||||||||| ||||||||| | |||||||| ||||||||||||| || |||| |||||||||| ||| ||||||||||||| ||||| |||||||||    
T  11092940 gagtttaattttcatgcactgtaagtgtaaaat-ttttacactgtcaccatattagaatcaatcatctgtttgactttagaagtggttataataaaagtc 11092842  T
Q  241 agatgcttctaatga 255  Q
    | ||  |||||||||    
T  11092841 aaatctttctaatga 11092827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 31365201 - 31365111
Alignment:
Q  1 ttataaaaattgttacaagctgttttcatacattctcccaaacagtctcacagaacttatgccaatagataagct-atataagccaatcca 90  Q
    |||| |||||||| | |||||| |||||||  |||||||||||||||||||| |||||||||||||||||||||| | |||||||||||||    
T  31365201 ttatgaaaattgtcataagctgctttcataagttctcccaaacagtctcacaaaacttatgccaatagataagctcaaataagccaatcca 31365111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 17 - 93
Target Start/End: Original strand, 584119 - 584196
Alignment:
Q  17 aagctgttttcatacattctcccaaacagtctcacagaacttatgccaatagataagct-atataagccaatccaaac 93  Q
    |||||||||||||| ||||||| ||||||||||||||||||||||| | |||||||||| | ||||| ||||||||||    
T  584119 aagctgttttcataaattctccaaaacagtctcacagaacttatgctagtagataagctcaaataagtcaatccaaac 584196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 31365322 - 31365232
Alignment:
Q  1 ttataaaaattgttacaagctgttttcatacattctcccaaacagtctcacagaacttatgccaatagataagct-atataagccaatcca 90  Q
    |||| |||||||| | ||||||| ||||||  |||||||||||||| ||||| || |||||||||||||||| || | |||||||||||||    
T  31365322 ttatgaaaattgtcataagctgtattcataagttctcccaaacagtgtcacaaaaattatgccaatagataaactcaaataagccaatcca 31365232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 17 - 102
Target Start/End: Original strand, 39980802 - 39980888
Alignment:
Q  17 aagctgttttcatacattctcccaaacagtctcacagaacttatgccaatagataagct-atataagccaatccaaacaggccctaa 102  Q
    ||||||||||||||  |||||  ||||||||||||| ||||||||| | |||||||||| | | |||||||||||||||| ||||||    
T  39980802 aagctgttttcataagttctcttaaacagtctcacaaaacttatgctagtagataagctcaaacaagccaatccaaacagaccctaa 39980888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 93
Target Start/End: Complemental strand, 24085335 - 24085258
Alignment:
Q  17 aagctgttttcatacattctcccaaacagtctcacagaacttatgccaatagataagct-atataagccaatccaaac 93  Q
    ||||||||||||||  |||||| || |||||||||| ||||||||||  |||||||||| | ||||||||||||||||    
T  24085335 aagctgttttcataagttctccaaaccagtctcacaaaacttatgccggtagataagctcaaataagccaatccaaac 24085258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 20880533 - 20880627
Alignment:
Q  1 ttataaaaattgttacaagctgttttcatacattctcccaaacagtctcacagaacttatgccaatagataagct-atataagccaatccaaaca 94  Q
    |||| |||||||| | ||||||||||||||  |||||||||| ||||| |   ||||||||| | |||||||||| | |||||||||||||||||    
T  20880533 ttatgaaaattgtcataagctgttttcataggttctcccaaatagtctaaggaaacttatgcaagtagataagctcaaataagccaatccaaaca 20880627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 92
Target Start/End: Original strand, 21367740 - 21367816
Alignment:
Q  17 aagctgttttcatacattctcccaaacagtctcacagaacttatgccaatagataagct-atataagccaatccaaa 92  Q
    ||||||||||||||  ||||||||||||||| |||| |||||||||   ||||||| || | |||||||||||||||    
T  21367740 aagctgttttcataagttctcccaaacagtcccacaaaacttatgctggtagataatctcaaataagccaatccaaa 21367816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 97
Target Start/End: Original strand, 47132397 - 47132470
Alignment:
Q  23 ttttcatacattctcccaaacagtctcacagaacttatgccaatagataagct-atataagccaatccaaacaggc 97  Q
    ||||||||  |||||| ||||||||||||| ||||  ||||| |||||||||| | ||||||||||||||||||||    
T  47132397 ttttcataagttctccaaaacagtctcacaaaact--tgccagtagataagctcaaataagccaatccaaacaggc 47132470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 103
Target Start/End: Original strand, 49556964 - 49557024
Alignment:
Q  44 agtctcacagaacttatgccaatagataagct-atataagccaatccaaacaggccctaag 103  Q
    ||||||||| ||||||||||| | |||||||| | ||||||||||||||| ||||||||||    
T  49556964 agtctcacaaaacttatgccacttgataagctcagataagccaatccaaataggccctaag 49557024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 39 - 97
Target Start/End: Complemental strand, 20170689 - 20170630
Alignment:
Q  39 caaacagtctcacagaacttatgccaatagataagct-atataagccaatccaaacaggc 97  Q
    |||||||||||||  |||||||| || |||||||||| | ||||||||||||||||||||    
T  20170689 caaacagtctcactaaacttatgtcactagataagctcaaataagccaatccaaacaggc 20170630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 97
Target Start/End: Complemental strand, 22963 - 22882
Alignment:
Q  17 aagctgttttcatacattctcccaaacagtctcacagaacttatgccaatagataagct-atataagccaatccaaacaggc 97  Q
    ||||||||||||||  |||||| ||||| ||||||| ||||||||||| |||| ||| | | |||||||||||  |||||||    
T  22963 aagctgttttcataacttctcctaaacaatctcacaaaacttatgccagtagacaagttcaaataagccaatctcaacaggc 22882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 214
Target Start/End: Original strand, 8246273 - 8246346
Alignment:
Q  141 gagtttaattttgatgcactgtcaatgtaaaatgttttacactgtcaacacattataatcaatcatgtgtatga 214  Q
    ||||||||||||||| |||| ||||||||| | ||||||||  ||||||| || | || ||||||| |||||||    
T  8246273 gagtttaattttgatacactttcaatgtaagaagttttacaaagtcaacaaatcacaaccaatcatatgtatga 8246346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 92
Target Start/End: Complemental strand, 18405825 - 18405752
Alignment:
Q  20 ctgttttcatacattctcccaaacagtctcacagaacttatgccaatagataagct-atataagccaatccaaa 92  Q
    |||||||||||  ||||  |||||||||||||| |||||||| || |||||||||| | |||| ||||||||||    
T  18405825 ctgttttcataagttcttgcaaacagtctcacaaaacttatgtcagtagataagctcaaataaaccaatccaaa 18405752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 75
Target Start/End: Original strand, 30443955 - 30444024
Alignment:
Q  6 aaaattgttacaagctgttttcatacattctcccaaacagtctcacagaacttatgccaatagataagct 75  Q
    |||||||| | ||||||||||||||   ||| ||||||||||||||  || |||||||| ||||||||||    
T  30443955 aaaattgtcataagctgttttcataagctctaccaaacagtctcaccaaatttatgccagtagataagct 30444024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 45
Target Start/End: Original strand, 201664 - 201692
Alignment:
Q  17 aagctgttttcatacattctcccaaacag 45  Q
    |||||||||||||||||||||||||||||    
T  201664 aagctgttttcatacattctcccaaacag 201692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 61
Target Start/End: Complemental strand, 402539 - 402495
Alignment:
Q  17 aagctgttttcatacattctcccaaacagtctcacagaacttatg 61  Q
    ||||||||||||||| ||||||||||||||||  || ||||||||    
T  402539 aagctgttttcatacgttctcccaaacagtcttgcaaaacttatg 402495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 140 - 255
Target Start/End: Complemental strand, 2101306 - 2101190
Alignment:
Q  140 agagtttaattttg-atgcactgtcaatgtaaaatgttttacactgtcaacacattataatcaatcatgtgtatgactttagaagttgttatgataaaag 238  Q
    |||||||||||||  || ||||||||||| ||||  | ||||| ||||| ||||| |  | ||||||||||| | |||| | || | |||||||||||||    
T  2101306 agagtttaatttttcatccactgtcaatgcaaaaaatgttacattgtcagcacatcactaccaatcatgtgtgtaacttgaaaactggttatgataaaag 2101207  T
Q  239 tcagatgcttctaatga 255  Q
    ||| ||| |||||||||    
T  2101206 tcaaatgtttctaatga 2101190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 141 - 185
Target Start/End: Original strand, 3448525 - 3448569
Alignment:
Q  141 gagtttaattttgatgcactgtcaatgtaaaatgttttacactgt 185  Q
    |||||||| |||||| |||||||| ||||||| ||||||||||||    
T  3448525 gagtttaactttgatacactgtcagtgtaaaaagttttacactgt 3448569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 39 - 75
Target Start/End: Complemental strand, 3845538 - 3845502
Alignment:
Q  39 caaacagtctcacagaacttatgccaatagataagct 75  Q
    |||||||||||||| ||||||||||| ||||||||||    
T  3845538 caaacagtctcacaaaacttatgccagtagataagct 3845502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 96
Target Start/End: Complemental strand, 9832752 - 9832672
Alignment:
Q  17 aagctgttttcatacattctcccaaacagtctcacagaacttatgccaatagataagct-atataagccaatccaaacagg 96  Q
    |||||||||||| |  |||||||||||||| | ||| |||||||| ||||| ||||||| | ||||| ||||| |||||||    
T  9832752 aagctgttttcaaaagttctcccaaacagtttgacaaaacttatgtcaataaataagctcaaataagtcaatctaaacagg 9832672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 99
Target Start/End: Complemental strand, 42799960 - 42799880
Alignment:
Q  21 tgttttcatacattctcccaaacagtctcacagaacttatgccaatagataa-gct-atataagccaatccaaacaggccc 99  Q
    ||||||||||  |||||||||| ||| ||||| ||| |||| || ||||||| ||| | ||||||||||||||||||||||    
T  42799960 tgttttcataagttctcccaaagagtttcacaaaacatatgtcagtagataaagctcaaataagccaatccaaacaggccc 42799880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 61
Target Start/End: Original strand, 43046738 - 43046782
Alignment:
Q  17 aagctgttttcatacattctcccaaacagtctcacagaacttatg 61  Q
    ||||||||||||||  |||||||||||||||||||| ||| ||||    
T  43046738 aagctgttttcataagttctcccaaacagtctcacaaaacatatg 43046782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 32)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 2295153 - 2295251
Alignment:
Q  1 ttataaaaattgttacaagctgttttcatacattctcccaaacagtctcacagaacttatgccaatagataagct-atataagccaatccaaacaggcc 98  Q
    |||| |||||||| | ||||||||||||||  |||||||||||||||||||| ||||||||||| |||||||||| | |||||||||| ||||||||||    
T  2295153 ttatgaaaattgtcataagctgttttcataagttctcccaaacagtctcacaaaacttatgccagtagataagctcaaataagccaattcaaacaggcc 2295251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 17 - 105
Target Start/End: Original strand, 38247400 - 38247489
Alignment:
Q  17 aagctgttttcatacattctcccaaacagtctcacagaacttatgccaatagataagct-atataagccaatccaaacaggccctaagta 105  Q
    ||||||||||||||  ||||||||||||||  |||| ||||||||||| |||||||| | | |||| |||||||||||||||||||||||    
T  38247400 aagctgttttcataagttctcccaaacagtgacacaaaacttatgccagtagataagttcaaataacccaatccaaacaggccctaagta 38247489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 141 - 230
Target Start/End: Complemental strand, 41187435 - 41187346
Alignment:
Q  141 gagtttaattttgatgcactgtcaatgtaaaatgttttacactgtcaacacattataatcaatcatgtgtatgactttagaagttgttat 230  Q
    |||||||||||| ||| | |||||||||||||||||||||||| |||||| ||   ||   || ||||||||||||||||||||||||||    
T  41187435 gagtttaattttcatgtaatgtcaatgtaaaatgttttacactttcaacatatcgcaacttattatgtgtatgactttagaagttgttat 41187346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 17 - 94
Target Start/End: Complemental strand, 37617462 - 37617384
Alignment:
Q  17 aagctgttttcatacattctcccaaacagtctcacagaacttatgccaatagataagct-atataagccaatccaaaca 94  Q
    |||||||||||||| |||||| |||||||||||||| |||||| | |||||||||| || | ||||| |||||||||||    
T  37617462 aagctgttttcataaattctcgcaaacagtctcacaaaacttacggcaatagataaactcaaataagtcaatccaaaca 37617384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 24 - 92
Target Start/End: Original strand, 2777971 - 2778040
Alignment:
Q  24 tttcatacattctcccaaacagtctcacagaacttatgccaatagataagct-atataagccaatccaaa 92  Q
    |||||||  |||||| ||||||||||||| ||||||||| |||||||||||| | |||||||||||||||    
T  2777971 tttcataagttctcctaaacagtctcacaaaacttatgcaaatagataagctaaaataagccaatccaaa 2778040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 3234028 - 3233933
Alignment:
Q  1 ttataaaaattgttacaagctgttttcatacattctcccaaacagtctcacagaacttatgccaatagataagct-atataagccaatccaaacag 95  Q
    |||| |||| ||||| ||| ||||||||||  ||||||| |||||||||||| |||||| | || |||||||||| | ||||| ||||||||||||    
T  3234028 ttatgaaaactgttataagttgttttcataagttctccctaacagtctcacaaaacttacggcactagataagctcaaataagtcaatccaaacag 3233933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 5 - 99
Target Start/End: Original strand, 33186367 - 33186462
Alignment:
Q  5 aaaaattgttacaagctgttttcatacattctcccaaacagtctcacagaacttatgccaatagataagct-atataagccaatccaaacaggccc 99  Q
    ||||||||| | || | |||||||||  |||||| | ||||||||||| ||||||||||||  ||||| || | ||||||||||||||||||||||    
T  33186367 aaaaattgtcataaccagttttcataagttctcctagacagtctcacaaaacttatgccaacggataaactcaaataagccaatccaaacaggccc 33186462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 98
Target Start/End: Complemental strand, 43230770 - 43230687
Alignment:
Q  16 caagctgttttcatacattctcccaaacagtctcacagaacttatgccaatagataagct-atataagccaatccaaacaggcc 98  Q
    ||||||||||||||| ||||||| ||||| ||||  | ||||||||||| |||| ||||| | ||| |||||||||||||||||    
T  43230770 caagctgttttcataaattctcctaaacaatctcgtaaaacttatgccagtagagaagctcaaatatgccaatccaaacaggcc 43230687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 92
Target Start/End: Original strand, 5720988 - 5721074
Alignment:
Q  7 aaattgttacaagctgttttcatacattctcccaaacagtctcacagaacttatgccaatagataagct-atataagccaatccaaa 92  Q
    ||||||| | ||||||||||||||  |||||||||||||||  ||| ||||||||| | ||| |||||| | |||||||||||||||    
T  5720988 aaattgtcataagctgttttcataagttctcccaaacagtccaacaaaacttatgcaagtagttaagctcaaataagccaatccaaa 5721074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 140 - 190
Target Start/End: Original strand, 16979580 - 16979630
Alignment:
Q  140 agagtttaattttgatgcactgtcaatgtaaaatgttttacactgtcaaca 190  Q
    |||||||||||||||| |||||||| ||||||| | |||||||||||||||    
T  16979580 agagtttaattttgatacactgtcagtgtaaaaagatttacactgtcaaca 16979630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 6 - 64
Target Start/End: Original strand, 49938809 - 49938867
Alignment:
Q  6 aaaattgttacaagctgttttcatacattctcccaaacagtctcacagaacttatgcca 64  Q
    |||||||| | ||||||||||||||  |||||||||||| ||||||| |||||||||||    
T  49938809 aaaattgtcataagctgttttcataagttctcccaaacaatctcacaaaacttatgcca 49938867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 17 - 97
Target Start/End: Original strand, 473236 - 473317
Alignment:
Q  17 aagctgttttcatacattctcccaaacagtctcacagaacttatgccaatagataagct-atataagccaatccaaacaggc 97  Q
    ||||| ||||||||  ||||||||||  || ||||||||||||||||| |||||| ||| | ||||||||||| ||||||||    
T  473236 aagcttttttcataagttctcccaaaatgtttcacagaacttatgccagtagataggctcaaataagccaatctaaacaggc 473317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 142 - 275
Target Start/End: Original strand, 2181793 - 2181926
Alignment:
Q  142 agtttaattttgatgcactgtcaatgtaaaatgttttacactgtcaacacattataatcaatcatgtgtatgactttagaagttgttatgataaaagtca 241  Q
    ||||||||||| | ||| ||||| ||| |||  ||||||||||||||| ||  | || ||||||||| | | ||||||| |||  ||||||||||| |||    
T  2181793 agtttaattttcacgcattgtcattgttaaaccttttacactgtcaacccaacacaaccaatcatgtatgttactttagtagtgattatgataaaaatca 2181892  T
Q  242 gatgcttctaatgacttgacaattatgattgatt 275  Q
     ||  ||||||||| |||||  ||||||||||||    
T  2181893 aattattctaatgatttgactgttatgattgatt 2181926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 141 - 190
Target Start/End: Complemental strand, 4274493 - 4274444
Alignment:
Q  141 gagtttaattttgatgcactgtcaatgtaaaatgttttacactgtcaaca 190  Q
    |||||||||||||||||| | ||||||||| |||||||||||| ||||||    
T  4274493 gagtttaattttgatgcattatcaatgtaagatgttttacactatcaaca 4274444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 6 - 98
Target Start/End: Complemental strand, 14576662 - 14576569
Alignment:
Q  6 aaaattgttacaagctgttttcatacattctcccaaacagtctcacagaacttatgccaatagataagct-atataagccaatccaaacaggcc 98  Q
    |||||||| | |||||||||||| |  || |||||||||||  |||| || ||| |||| |||||||||| | |||||||||||||||||||||    
T  14576662 aaaattgtcataagctgttttcacaagttgtcccaaacagtgccacaaaatttaagccagtagataagctcaaataagccaatccaaacaggcc 14576569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 17 - 105
Target Start/End: Complemental strand, 34795443 - 34795354
Alignment:
Q  17 aagctgttttcatacattctcccaaacagtctcacagaacttatgccaatagataagct-atataagccaatccaaacaggccctaagta 105  Q
    ||||||||||||||  ||||||||||||||||| || || |||||||| |||   |||| | |||| |||||||||||||||||| ||||    
T  34795443 aagctgttttcataagttctcccaaacagtctcgcaaaatttatgccagtaggctagctcaaataacccaatccaaacaggcccttagta 34795354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 22 - 102
Target Start/End: Original strand, 36872806 - 36872887
Alignment:
Q  22 gttttcatacattctcccaaacagtctcacagaacttatgccaatagataagct-atataagccaatccaaacaggccctaa 102  Q
    ||||||||| ||||||| |||||||||| || ||||||||    ||| |||||| | |||||||||||||||||||||||||    
T  36872806 gttttcataaattctccaaaacagtctcgcaaaacttatgttgttagttaagcttaaataagccaatccaaacaggccctaa 36872887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 33 - 100
Target Start/End: Original strand, 2295280 - 2295348
Alignment:
Q  33 ttctcccaaacagtctcacagaacttatgccaatagataagct-atataagccaatccaaacaggccct 100  Q
    |||||||||| ||||||| | |||||| | || |||||||||| | |||||||||||||||||||||||    
T  2295280 ttctcccaaatagtctcagaaaacttaagtcagtagataagctcaaataagccaatccaaacaggccct 2295348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 33 - 104
Target Start/End: Complemental strand, 14385774 - 14385702
Alignment:
Q  33 ttctcccaaacagtctcacagaacttatgccaatagataagct-atataagccaatccaaacaggccctaagt 104  Q
    |||||| ||| ||||||||  ||||||||||| |||||||||| | |||||||||||| ||||||||| ||||    
T  14385774 ttctccaaaatagtctcacgaaacttatgccagtagataagctcaaataagccaatccgaacaggccccaagt 14385702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 33 - 100
Target Start/End: Original strand, 34952291 - 34952359
Alignment:
Q  33 ttctcccaaacagtctcacagaacttatgccaatagataagct-atataagccaatccaaacaggccct 100  Q
    |||||||||| | ||||||| | ||||| |||||||||||||| | |||||||||||||||||| ||||    
T  34952291 ttctcccaaataatctcacaaatcttatcccaatagataagctcaaataagccaatccaaacagaccct 34952359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 61
Target Start/End: Original strand, 38001668 - 38001712
Alignment:
Q  17 aagctgttttcatacattctcccaaacagtctcacagaacttatg 61  Q
    ||||||||||||||  |||||||||||||||||||| ||||||||    
T  38001668 aagctgttttcataagttctcccaaacagtctcacaaaacttatg 38001712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 174 - 241
Target Start/End: Complemental strand, 3131746 - 3131679
Alignment:
Q  174 gttttacactgtcaacacattataatcaatcatgtgtatgactttagaagttgttatgataaaagtca 241  Q
    |||||||||||||  || |||| || ||||||||||| |||||||  |||| ||||||||||||||||    
T  3131746 gttttacactgtcggcatattacaaacaatcatgtgtgtgactttgaaagtagttatgataaaagtca 3131679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 46 - 100
Target Start/End: Original strand, 15477655 - 15477710
Alignment:
Q  46 tctcacagaacttatgccaatagataagctata-taagccaatccaaacaggccct 100  Q
    ||||||| ||||||||| | |||||||||| || ||||||||||||||||||||||    
T  15477655 tctcacaaaacttatgcaagtagataagctctaataagccaatccaaacaggccct 15477710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 51929552 - 51929497
Alignment:
Q  1 ttataaaaattgttacaagctgttttcatacattctcccaaacagtctcacagaac 56  Q
    |||| |||||||| | |||||||||||||  ||||||||||||| |||||||||||    
T  51929552 ttatgaaaattgtcataagctgttttcatgaattctcccaaacaatctcacagaac 51929497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 141 - 223
Target Start/End: Original strand, 3242091 - 3242173
Alignment:
Q  141 gagtttaattttgatgcactgtcaatgtaaaatgttttacactgtcaacacattataatcaatcatgtgtatgactttagaag 223  Q
    ||||||||||||||| |||  ||| |||||||||||| ||||||| | || || |||| ||||| | ||| ||||||||||||    
T  3242091 gagtttaattttgatacacactcagtgtaaaatgtttaacactgttagcaaatcataaccaatcttatgtctgactttagaag 3242173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 75
Target Start/End: Original strand, 29904824 - 29904882
Alignment:
Q  17 aagctgttttcatacattctcccaaacagtctcacagaacttatgccaatagataagct 75  Q
    |||||||||| |||  ||||| |||||||||||||| ||||||||| | ||||||||||    
T  29904824 aagctgtttttataagttctctcaaacagtctcacaaaacttatgcaagtagataagct 29904882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 75
Target Start/End: Complemental strand, 33204375 - 33204333
Alignment:
Q  33 ttctcccaaacagtctcacagaacttatgccaatagataagct 75  Q
    |||||||||||||||||||| |||||||| || ||||||||||    
T  33204375 ttctcccaaacagtctcacaaaacttatgtcagtagataagct 33204333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 94
Target Start/End: Complemental strand, 50644248 - 50644174
Alignment:
Q  21 tgttttcatacattctcccaaacagtctcacagaacttatgccaatagataagct-atataagccaatccaaaca 94  Q
    ||||||||||  |||||||||||||||||||| ||| ||||  | |||||||||| | ||||| |||||||||||    
T  50644248 tgttttcataagttctcccaaacagtctcacaaaacatatgttagtagataagctcaaataagtcaatccaaaca 50644174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 52
Target Start/End: Original strand, 4445774 - 4445815
Alignment:
Q  11 tgttacaagctgttttcatacattctcccaaacagtctcaca 52  Q
    ||||| |||||| ||||||| |||||||||||||||||||||    
T  4445774 tgttataagctgctttcataaattctcccaaacagtctcaca 4445815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 102
Target Start/End: Original strand, 28287893 - 28287958
Alignment:
Q  38 ccaaacagtctcacagaacttatgccaatagataagctata-taagccaatccaaacaggccctaa 102  Q
    ||||| ||||||||| | |||||||||||| |||| || || |||||||||||||||||| |||||    
T  28287893 ccaaatagtctcacaaagcttatgccaatatataaactctaataagccaatccaaacaggtcctaa 28287958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 57
Target Start/End: Original strand, 7941679 - 7941719
Alignment:
Q  17 aagctgttttcatacattctcccaaacagtctcacagaact 57  Q
    |||||||||||||| ||||| ||||||||||||||| ||||    
T  7941679 aagctgttttcataaattcttccaaacagtctcacaaaact 7941719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 61
Target Start/End: Complemental strand, 9572098 - 9572054
Alignment:
Q  17 aagctgttttcatacattctcccaaacagtctcacagaacttatg 61  Q
    ||||||||||||||  |||||||||||||||||||| | ||||||    
T  9572098 aagctgttttcataagttctcccaaacagtctcacaaatcttatg 9572054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 30)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 139 - 255
Target Start/End: Original strand, 10231797 - 10231913
Alignment:
Q  139 tagagtttaattttgatgcactgtcaatgtaaaatgttttacactgtcaacacattataatcaatcatgtgtatgactttagaagttgttatgataaaag 238  Q
    |||||||||||||||||  | ||||| ||||||| ||||||||||||| ||| |||| |||||||||| ||| ||| ||||||| | |||||||||||||    
T  10231797 tagagtttaattttgatatattgtcagtgtaaaaagttttacactgtccacatattacaatcaatcatatgtgtgattttagaaatagttatgataaaag 10231896  T
Q  239 tcagatgcttctaatga 255  Q
    ||| ||| || ||||||    
T  10231897 tcaaatgattttaatga 10231913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 33 - 104
Target Start/End: Original strand, 15305763 - 15305835
Alignment:
Q  33 ttctcccaaacagtctcacagaacttatgccaatagataagct-atataagccaatccaaacaggccctaagt 104  Q
    |||| ||||||||| ||||| |||||||| ||||||||||||| | |||||||||||||||||||||||||||    
T  15305763 ttctaccaaacagtttcacaaaacttatgtcaatagataagctcaaataagccaatccaaacaggccctaagt 15305835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 17 - 102
Target Start/End: Complemental strand, 42659208 - 42659122
Alignment:
Q  17 aagctgttttcatacattctcccaaacagtctcacagaacttatgccaatagataagct-atataagccaatccaaacaggccctaa 102  Q
    |||||||||||| |  |||||||||||||||||||| ||||||||||| || ||||||| | ||||||||| ||||||||| |||||    
T  42659208 aagctgttttcaaaacttctcccaaacagtctcacaaaacttatgccagtaaataagctcaaataagccaacccaaacaggtcctaa 42659122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 6 - 102
Target Start/End: Original strand, 30331813 - 30331910
Alignment:
Q  6 aaaattgttacaagctgttttcatacattctcccaaacagtctcacagaacttatgccaatagataagct-atataagccaatccaaacaggccctaa 102  Q
    |||||||| | ||| | ||||||||  |||||||||||||||||||| |||||||| || |||||||||| | ||||| ||||||||||| |||||||    
T  30331813 aaaattgtcataaggttttttcataagttctcccaaacagtctcacaaaacttatgtcagtagataagctgaaataagtcaatccaaacaagccctaa 30331910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 141 - 273
Target Start/End: Original strand, 2097380 - 2097512
Alignment:
Q  141 gagtttaattttgatgcactgtcaatgtaaaatgttttacactgtcaacacattataatcaatcatgtgtatgactttagaagttgttatgataaaagtc 240  Q
    |||||||| ||| ||  ||||||| |||||||||||||| ||| | ||||||| | || ||||||||||| |||||| |||||  ||||||| ||||||     
T  2097380 gagtttaaatttcatagactgtcagtgtaaaatgttttatactatgaacacatcacaagcaatcatgtgtgtgacttcagaagcggttatgaaaaaagta 2097479  T
Q  241 agatgcttctaatgacttgacaattatgattga 273  Q
    | ||| || ||||||| | || |||||||||||    
T  2097480 aaatgtttataatgacctaacgattatgattga 2097512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 41 - 100
Target Start/End: Complemental strand, 7928271 - 7928211
Alignment:
Q  41 aacagtctcacagaacttatgccaatagataagct-atataagccaatccaaacaggccct 100  Q
    |||||||||||| |||||||| ||||||||||||| | |||||||||||||||||||||||    
T  7928271 aacagtctcacacaacttatgtcaatagataagctcaaataagccaatccaaacaggccct 7928211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 43279542 - 43279460
Alignment:
Q  1 ttataaaaattgttacaagctgttttcatacattctc--ccaaacagtctcacagaacttatgccaatagataagctatataa 81  Q
    |||| |||||||| | |||||||||||||| ||||||  ||||||||||||||| ||||||||| | ||||||||||| ||||    
T  43279542 ttatgaaaattgtcataagctgttttcataaattctctcccaaacagtctcacaaaacttatgctagtagataagctaaataa 43279460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 6 - 75
Target Start/End: Complemental strand, 15757666 - 15757597
Alignment:
Q  6 aaaattgttacaagctgttttcatacattctcccaaacagtctcacagaacttatgccaatagataagct 75  Q
    |||||||| | |||| ||||||||| |||||||||| |||||||||| ||||||||||| || |||||||    
T  15757666 aaaattgtcataagcagttttcataaattctcccaagcagtctcacaaaacttatgccagtaaataagct 15757597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 33 - 101
Target Start/End: Complemental strand, 42868462 - 42868393
Alignment:
Q  33 ttctcccaaacagtctcacagaacttatgccaatagataagct-atataagccaatccaaacaggcccta 101  Q
    |||||||||||||| ||||  ||| |||||||||||||||||| | ||||| ||||||||||||||||||    
T  42868462 ttctcccaaacagtgtcacgaaacgtatgccaatagataagctcaaataaggcaatccaaacaggcccta 42868393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 33 - 104
Target Start/End: Original strand, 11863990 - 11864061
Alignment:
Q  33 ttctcccaaacagtctcacagaacttatgccaatagataag-ctatataagccaatccaaacaggccctaagt 104  Q
    |||||||||||||||||||||| |||| |||| || ||||| | | |||||||||||||||||||||||||||    
T  11863990 ttctcccaaacagtctcacagacctta-gccagtaaataagaccaaataagccaatccaaacaggccctaagt 11864061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 17 - 99
Target Start/End: Original strand, 32592659 - 32592744
Alignment:
Q  17 aagctgttttcatacattctcccaaacagtctcacagaacttatgccaatagataagct---atataagccaatccaaacaggccc 99  Q
    ||||| ||||||||  |||||||||| || ||| || |||||||||||  |||||||||   ||||||||||||||||||||||||    
T  32592659 aagctattttcataagttctcccaaatagactcccaaaacttatgccatcagataagcttaaatataagccaatccaaacaggccc 32592744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 141 - 224
Target Start/End: Original strand, 35991276 - 35991359
Alignment:
Q  141 gagtttaattttgatgcactgtcaatgtaaaatgttttacactgtcaacacattataatcaatcatgtgtatgactttagaagt 224  Q
    |||||||||||| || |||||||||||||||| |||||||||||  | || || |||||||| ||||||| ||| |||| ||||    
T  35991276 gagtttaattttaatacactgtcaatgtaaaaagttttacactgatagcaaatcataatcaagcatgtgtgtgattttacaagt 35991359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 32 - 100
Target Start/End: Original strand, 3312165 - 3312234
Alignment:
Q  32 attctcccaaacagtctcacagaacttatgccaatagataagct-atataagccaatccaaacaggccct 100  Q
    |||||||| |||||||||||| |||||| | || |||||||||| | ||||||||||||||||| |||||    
T  3312165 attctccccaacagtctcacaaaacttacgtcagtagataagctcaaataagccaatccaaacaagccct 3312234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 75
Target Start/End: Original strand, 9174910 - 9174946
Alignment:
Q  39 caaacagtctcacagaacttatgccaatagataagct 75  Q
    |||||||||||||| ||||||||||||||||||||||    
T  9174910 caaacagtctcacataacttatgccaatagataagct 9174946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 74
Target Start/End: Original strand, 32837389 - 32837453
Alignment:
Q  11 tgttacaagctgttttcatacattctcccaaacagtctcac-agaacttatgccaatagataagc 74  Q
    ||||| ||||||||||||||  ||||||||||||||||||| || |||||| ||| |||||||||    
T  32837389 tgttataagctgttttcataagttctcccaaacagtctcacaagtacttataccactagataagc 32837453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 98
Target Start/End: Original strand, 31744371 - 31744453
Alignment:
Q  17 aagctgttttcatacattctcccaaacagtctcacagaacttatgccaatagataag-ctatataagccaatccaaacaggcc 98  Q
    |||||||||||| |  ||||| |||||||||||| | |||||||| |  |||||||| | | |||||||||||||||||||||    
T  31744371 aagctgttttcaaaagttctctcaaacagtctcagaaaacttatgtcggtagataagcccaaataagccaatccaaacaggcc 31744453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 75
Target Start/End: Original strand, 41851612 - 41851666
Alignment:
Q  21 tgttttcatacattctcccaaacagtctcacagaacttatgccaatagataagct 75  Q
    ||||| |||| |||||||||| |||||||||| ||||| || |||||||||||||    
T  41851612 tgtttccataaattctcccaatcagtctcacaaaacttttgtcaatagataagct 41851666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 95
Target Start/End: Complemental strand, 27317082 - 27317025
Alignment:
Q  39 caaacagtctcacagaacttatgccaatagataagct-atataagccaatccaaacag 95  Q
    |||||||| ||||| | |||||||||||||||||||| | ||||| ||||||||||||    
T  27317082 caaacagtgtcacaaagcttatgccaatagataagctaaaataagtcaatccaaacag 27317025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 97
Target Start/End: Original strand, 27317456 - 27317533
Alignment:
Q  21 tgttttcatacattctcccaaacagtctcacagaacttatgccaatagataagct-atataagccaatccaaacaggc 97  Q
    ||||||||||  ||||| |||||||||||| | |||||||| |  |||||||||| | ||||| ||||||||||||||    
T  27317456 tgttttcataagttctctcaaacagtctcataaaacttatgtcggtagataagctcaaataagtcaatccaaacaggc 27317533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 190
Target Start/End: Complemental strand, 29933559 - 29933510
Alignment:
Q  141 gagtttaattttgatgcactgtcaatgtaaaatgttttacactgtcaaca 190  Q
    |||||| | |||||| |||||| ||| |||||||||||||||||||||||    
T  29933559 gagttttaatttgatacactgttaatttaaaatgttttacactgtcaaca 29933510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 92
Target Start/End: Complemental strand, 33319795 - 33319737
Alignment:
Q  33 ttctcccaaacagtctcacagaacttatgccaatagataagct-atataagccaatccaaa 92  Q
    |||||||||||||||||||  ||||||||||| |||| ||||| | |||||||||||||||    
T  33319795 ttctcccaaacagtctcac--aacttatgccagtagacaagctcaaataagccaatccaaa 33319737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 190
Target Start/End: Complemental strand, 41734034 - 41733989
Alignment:
Q  145 ttaattttgatgcactgtcaatgtaaaatgttttacactgtcaaca 190  Q
    ||||||||||| |||||||||| ||||| |||||||||| ||||||    
T  41734034 ttaattttgatacactgtcaatttaaaaagttttacactatcaaca 41733989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 97
Target Start/End: Original strand, 44590097 - 44590178
Alignment:
Q  17 aagctgttttcatacattctcccaaacagtctcacagaacttatgccaatagataagct-atataagccaatccaaacaggc 97  Q
    ||||||||||||||  ||||  ||||| |||||||| |||||||| | |||||||| || | ||||||||||||||| ||||    
T  44590097 aagctgttttcataagttctttcaaacggtctcacaaaacttatgtctatagataaactcaaataagccaatccaaagaggc 44590178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 33 - 100
Target Start/End: Original strand, 4607014 - 4607082
Alignment:
Q  33 ttctcccaaacagtctcacagaacttatgccaatagataagct-atataagccaatccaaacaggccct 100  Q
    |||||||||| ||||||||| |||||||     |||||||||| | |||||||||||||||||||||||    
T  4607014 ttctcccaaatagtctcacaaaacttatattggtagataagctcaaataagccaatccaaacaggccct 4607082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 215 - 275
Target Start/End: Complemental strand, 13166144 - 13166084
Alignment:
Q  215 ctttagaagttgttatgataaaagtcagatgcttctaatgacttgacaattatgattgatt 275  Q
    ||||||||||  ||||||||||||||| ||| |||||| || |||||| |||| |||||||    
T  13166144 ctttagaagtgattatgataaaagtcaaatgtttctaacgatttgacagttattattgatt 13166084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 36 - 98
Target Start/End: Complemental strand, 15370302 - 15370238
Alignment:
Q  36 tcccaaacagtctcacagaa-cttatgccaatagataagct-atataagccaatccaaacaggcc 98  Q
    ||||||||||||||||| |  ||||||||| |||||||||| | ||||| |||||||||||||||    
T  15370302 tcccaaacagtctcacaaatgcttatgccagtagataagctcaaataagtcaatccaaacaggcc 15370238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 65
Target Start/End: Original strand, 16451195 - 16451239
Alignment:
Q  21 tgttttcatacattctcccaaacagtctcacagaacttatgccaa 65  Q
    ||||||||||  ||||||||||| |||||||||||||||| ||||    
T  16451195 tgttttcataagttctcccaaacggtctcacagaacttattccaa 16451239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 72
Target Start/End: Original strand, 36125434 - 36125487
Alignment:
Q  17 aagctgttttcatacattctcccaaacagtctcacagaacttatgccaatagataa 72  Q
    |||||||||||||| ||||||   |||| ||||||||||||||||||| |||||||    
T  36125434 aagctgttttcatatattctct--aacactctcacagaacttatgccagtagataa 36125487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 61
Target Start/End: Original strand, 36534841 - 36534885
Alignment:
Q  17 aagctgttttcatacattctcccaaacagtctcacagaacttatg 61  Q
    ||||||||||||||  || ||||||||||||||||| ||||||||    
T  36534841 aagctgttttcataagttatcccaaacagtctcacaaaacttatg 36534885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 95
Target Start/End: Complemental strand, 43529856 - 43529776
Alignment:
Q  17 aagctgttttcatacattctcccaaacagtctca-cagaacttatgccaatagataagct-atataagccaatccaaacag 95  Q
    |||||||||||||| ||||||||||||||| |||  ||  ||||| |||||||||||||| | ||||| |||| |||||||    
T  43529856 aagctgttttcataaattctcccaaacagtgtcagaagtgcttataccaatagataagctcaaataagtcaattcaaacag 43529776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 20 - 104
Target Start/End: Complemental strand, 43717928 - 43717843
Alignment:
Q  20 ctgttttcatacattctcccaaacagtctcacagaacttatgccaatagataagct-atataagccaatccaaacaggccctaagt 104  Q
    |||||||||||  |||||||||| ||||||||| |||||||| ||||||||||||| | ||||||||||||||| |||||||||||    
T  43717928 ctgttttcataagttctcccaaatagtctcacaaaacttatgtcaatagataagctcaaataagccaatccaaataggccctaagt 43717843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 17 - 100
Target Start/End: Complemental strand, 30251451 - 30251367
Alignment:
Q  17 aagctgttttcatacattctcccaaacagtctcacagaacttatgccaatagataagct-atataagccaatccaaacaggccct 100  Q
    ||||||||||| ||  |||||||||||||||||||  |||||||| || |||||||||| | |||||||||||||||||||||||    
T  30251451 aagctgttttcgtaagttctcccaaacagtctcacgaaacttatgtcagtagataagctcaaataagccaatccaaacaggccct 30251367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 6 - 95
Target Start/End: Complemental strand, 36963362 - 36963272
Alignment:
Q  6 aaaattgttacaagctgttttcatacattctcccaaacagtctcacagaacttatgccaatagataagct-atataagccaatccaaacag 95  Q
    |||||||| | ||||||||||  ||  |||||||||||||||||||| ||||||||||| ||||| |||| | ||||||||||||||||||    
T  36963362 aaaattgtcaaaagctgtttttgtaagttctcccaaacagtctcacaaaacttatgccagtagattagctcaaataagccaatccaaacag 36963272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 6 - 75
Target Start/End: Original strand, 26771327 - 26771396
Alignment:
Q  6 aaaattgttacaagctgttttcatacattctcccaaacagtctcacagaacttatgccaatagataagct 75  Q
    |||||||| | ||||||||||||||  |||||||||||||||||||| ||||||||||  ||||||||||    
T  26771327 aaaattgtcataagctgttttcataagttctcccaaacagtctcacaaaacttatgcccgtagataagct 26771396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 28763425 - 28763498
Alignment:
Q  1 ttataaaaattgttacaagctgttttcatacattctcccaaacagtctcacagaacttatgccaatagataagc 74  Q
    |||| |||||||||| ||||||||||||||  |||||||||||||||||||| ||||||||  | |||||||||    
T  28763425 ttatgaaaattgttataagctgttttcataagttctcccaaacagtctcacaaaacttatgttactagataagc 28763498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 43045738 - 43045641
Alignment:
Q  1 ttataaaaattgttacaagctgttttcatacattctcccaaacagtctcacagaacttatgccaatagataagc-tatataagccaatccaaacaggc 97  Q
    |||| |||||||||  ||||||||||||||   ||||| ||||||||||||| | ||||||| | ||||||||| || ||||||||||||||||||||    
T  43045738 ttattaaaattgttgtaagctgttttcataagatctccaaaacagtctcacaaatcttatgctagtagataagcttaaataagccaatccaaacaggc 43045641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 35644001 - 35643900
Alignment:
Q  1 ttataaaaattgttacaagctgttttcatacattctcccaaacagtctcacagaacttatgccaatagataag-ctatataagccaatccaaacaggccc 99  Q
    |||| |||||||| | || || ||||||||  || ||||||||||||||||| || |||||||| |||||||| | | |||||||||||| |||||||||    
T  35644001 ttatgaaaattgtcataaactattttcataagttatcccaaacagtctcacaaaaattatgccagtagataagcccaaataagccaatcccaacaggccc 35643902  T
Q  100 ta 101  Q
    ||    
T  35643901 ta 35643900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 98
Target Start/End: Original strand, 38648425 - 38648506
Alignment:
Q  18 agctgttttcatacattctcccaaacagtctcacagaacttatgccaatagataagc-tatataagccaatccaaacaggcc 98  Q
    |||||||||||||   ||||||||||||||||||| |||||||| || ||||||| | || |||||||||||| ||||||||    
T  38648425 agctgttttcataaggtctcccaaacagtctcacaaaacttatgtcagtagataatcttaaataagccaatcctaacaggcc 38648506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 33 - 99
Target Start/End: Original strand, 38602416 - 38602483
Alignment:
Q  33 ttctcccaaacagtctcacagaacttatgccaatagataagct-atataagccaatccaaacaggccc 99  Q
    ||||||||||||| |||||| |||||||| || |||||||||| | ||||| ||||||||||||||||    
T  38602416 ttctcccaaacagcctcacaaaacttatgtcagtagataagctcaaataagtcaatccaaacaggccc 38602483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 35749583 - 35749509
Alignment:
Q  1 ttataaaaattgttacaagctgttttcatacattctcccaaacagtctcacagaacttatgccaatagataagct 75  Q
    |||| |||| || |||||||||||||||||  ||||| ||||||| ||| || |||||||| |||||||||||||    
T  35749583 ttatgaaaaatgctacaagctgttttcataagttctctcaaacagcctcgcaaaacttatgtcaatagataagct 35749509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 102
Target Start/End: Original strand, 6882001 - 6882083
Alignment:
Q  18 agctgttttcatacattctcccaaacagtctcacagaacttatgccaatagataagctatataagccaatccaaacaggccctaa 102  Q
    |||||||||||||  |||||||||||||||||||| |||||||| | |||  | || || ||||||||||||||||| |||||||    
T  6882001 agctgttttcataggttctcccaaacagtctcacaaaacttatgtc-atatgtcag-tagataagccaatccaaacaagccctaa 6882083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 36 - 94
Target Start/End: Complemental strand, 9130297 - 9130238
Alignment:
Q  36 tcccaaacagtctcacagaacttatgccaatagataagct-atataagccaatccaaaca 94  Q
    ||||||| ||||||||| ||||||||||| |||||||||| | |||||| ||||||||||    
T  9130297 tcccaaatagtctcacaaaacttatgccagtagataagctcaaataagctaatccaaaca 9130238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 6 - 61
Target Start/End: Complemental strand, 10758265 - 10758210
Alignment:
Q  6 aaaattgttacaagctgttttcatacattctcccaaacagtctcacagaacttatg 61  Q
    |||||||| | |||||||||||||| |||||  |||||||||||||| ||||||||    
T  10758265 aaaattgtcataagctgttttcataaattctatcaaacagtctcacaaaacttatg 10758210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 6 - 88
Target Start/End: Original strand, 18133718 - 18133801
Alignment:
Q  6 aaaattgttacaagctgttttcatacattctcccaaacagtctcacagaacttatgccaatagataagc-tatataagccaatc 88  Q
    |||||||||| |||||| ||||| |   ||||||||||||||||||| ||||||| | | ||||||||| || |||||||||||    
T  18133718 aaaattgttataagctgatttcacaagctctcccaaacagtctcacaaaacttatactagtagataagcttaaataagccaatc 18133801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 166 - 233
Target Start/End: Original strand, 30011717 - 30011784
Alignment:
Q  166 tgtaaaatgttttacactgtcaacacattataatcaatcatgtgtatgactttagaagttgttatgat 233  Q
    |||||||  |||||||||||||||| || | |||||||||| ||| ||| ||||||||| ||||||||    
T  30011717 tgtaaaacattttacactgtcaacaaatcaaaatcaatcatatgtgtgattttagaagtagttatgat 30011784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 91
Target Start/End: Original strand, 12976274 - 12976360
Alignment:
Q  6 aaaattgttacaagctgttttcatacattctcccaaacagtctcacagaacttatgccaatagataagct-atataagccaatccaa 91  Q
    |||||||||| |||||||| |||||  |||| | ||||||||||||| | ||||||| | |||||||||| | ||||||||| ||||    
T  12976274 aaaattgttagaagctgttctcataagttctactaaacagtctcacaaaccttatgctagtagataagctcaaataagccaaaccaa 12976360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 75
Target Start/End: Complemental strand, 18591957 - 18591915
Alignment:
Q  33 ttctcccaaacagtctcacagaacttatgccaatagataagct 75  Q
    |||||||||||||||||| | ||||||| ||||||||||||||    
T  18591957 ttctcccaaacagtctcataaaacttataccaatagataagct 18591915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 144 - 190
Target Start/End: Complemental strand, 24827333 - 24827287
Alignment:
Q  144 tttaattttgatgcactgtcaatgtaaaatgttttacactgtcaaca 190  Q
    |||||||||||| |  |||||||||||||||||||||| ||||||||    
T  24827333 tttaattttgatactttgtcaatgtaaaatgttttacattgtcaaca 24827287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 99
Target Start/End: Complemental strand, 35534621 - 35534527
Alignment:
Q  6 aaaattgttacaagctgttttcatacattctcccaaacagtctcacagaacttatgccaatagataagct-atataagccaatccaaacaggccc 99  Q
    |||||||| | |||||||||||| |  ||||| |||||||||||||| ||||||||  | |||||||||| | ||||| || || ||||||||||    
T  35534621 aaaattgtcataagctgttttcacaagttctctcaaacagtctcacaaaacttatgttagtagataagctcaaataagtcattctaaacaggccc 35534527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 94
Target Start/End: Original strand, 44792745 - 44792807
Alignment:
Q  33 ttctcccaaacagtctcacagaacttatgccaatagataagct-atataagccaatccaaaca 94  Q
    |||||| ||||||||||||| || |||| ||| |||||||||| | |||||||||||||||||    
T  44792745 ttctccaaaacagtctcacataatttatcccagtagataagctcaaataagccaatccaaaca 44792807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 102
Target Start/End: Original strand, 15180602 - 15180698
Alignment:
Q  6 aaaattgttacaagctgttttcatacattctcccaaacagtctcacagaacttatgccaatagataagct-atataagccaatccaaacaggccctaa 102  Q
    |||||||| | || ||||||||| | ||||||| ||| ||||||| | |||||||| || ||||||| || | ||||||||||||||||||| |||||    
T  15180602 aaaattgtcaaaacctgttttcagaaattctccaaaa-agtctcataaaacttatggcagtagataaactcaaataagccaatccaaacaggtcctaa 15180698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 241
Target Start/End: Complemental strand, 26762990 - 26762887
Alignment:
Q  141 gagtttaattttgatgcactgtcaatgtaaaa---tgttttacactgtcaacacattataatcaatcatgtgtatgactttagaagttgttatgataaaa 237  Q
    ||||||||| ||||| |||||||| ||||| |   |||| |||| | |||| | || | |||||||||| |||||||||||||||||  ||||||| |||    
T  26762990 gagtttaatgttgatacactgtcagtgtaataacatgttctacattttcaaaaaatcacaatcaatcatttgtatgactttagaagtaattatgattaaa 26762891  T
Q  238 gtca 241  Q
    ||||    
T  26762890 gtca 26762887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 241
Target Start/End: Complemental strand, 29705947 - 29705914
Alignment:
Q  208 tgtatgactttagaagttgttatgataaaagtca 241  Q
    ||||||||||||||||| ||||||||||||||||    
T  29705947 tgtatgactttagaagtggttatgataaaagtca 29705914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 100
Target Start/End: Complemental strand, 29818926 - 29818857
Alignment:
Q  32 attctcccaaacagtctcacagaacttatgccaatagataagct-atataagccaatccaaacaggccct 100  Q
    ||||||| ||||||||||||| ||||||||  | |||||||||| | ||| ||||||||||||| |||||    
T  29818926 attctccgaaacagtctcacaaaacttatgatagtagataagctcaaatatgccaatccaaacatgccct 29818857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 40859795 - 40859703
Alignment:
Q  1 ttataaaaattgttacaagctgttttcatacattctcccaaacagtctcacagaacttatgccaatagataagct-atataagccaatccaaac 93  Q
    |||| |||||||| | |||||||||||||| | ||||| |||||| |||||| ||||||||  |  ||||||||| | ||||||||||||||||    
T  40859795 ttatgaaaattgtcataagctgttttcata-agtctccaaaacagcctcacaaaacttatgttagcagataagctcaaataagccaatccaaac 40859703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 33 - 100
Target Start/End: Complemental strand, 12497053 - 12496985
Alignment:
Q  33 ttctcccaaacagtctcacagaacttatgccaatagataagct-atataagccaatccaaacaggccct 100  Q
    ||||| |||||||||||||| |||||||||||  ||||||||| | ||||  ||||||||| |||||||    
T  12497053 ttctctcaaacagtctcacaaaacttatgccaggagataagctcaaataaatcaatccaaataggccct 12496985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 76
Target Start/End: Original strand, 27754479 - 27754535
Alignment:
Q  20 ctgttttcatacattctcccaaacagtctcacagaacttatgccaatagataagcta 76  Q
    |||||||||||  |||||||||| ||||||||| ||||||||  |||| ||||||||    
T  27754479 ctgttttcataagttctcccaaatagtctcacaaaacttatgataataaataagcta 27754535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 54426100 - 54426197
Alignment:
Q  1 ttataaaaattgttacaagctgttttcatacattctcccaaacagtctcacagaacttatgccaatagataagct-atataagccaatccaaacaggc 97  Q
    |||| |||||||| | ||||||||||| ||  ||||||||| |||||||||| ||||||||||| |||||||||| | ||||||||||||||||||||    
T  54426100 ttatgaaaattgtcataagctgttttcctaagttctcccaagcagtctcacaaaacttatgccagtagataagctcaaataagccaatccaaacaggc 54426197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 39603183 - 39603090
Alignment:
Q  1 ttataaaaattgttacaagctgttttcatacattctcccaaacagtctcacagaacttatgccaatagataagct-atataagccaatccaaaca 94  Q
    ||||||||||||| | ||||||||||| ||  |||||||||||||||||||| ||||||| |||||||| ||||| | |||||||||||||||||    
T  39603183 ttataaaaattgtcataagctgttttcctaagttctcccaaacagtctcacaaaacttataccaataga-aagctcaaataagccaatccaaaca 39603090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 21731669 - 21731570
Alignment:
Q  1 ttataaaaattgttacaagctgttttcatacattctcccaaacagtctcacagaacttatgccaatagataagct-atataagccaatccaaacaggccc 99  Q
    |||| |||||||| | ||||||||||||||  |||||||||||| ||||||| |||||||| || |||||| ||| | |||| |||||||||||||||||    
T  21731669 ttatgaaaattgtgataagctgttttcataagttctcccaaacaatctcacaaaacttatgtcagtagatatgctcaaataaaccaatccaaacaggccc 21731570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 140 - 275
Target Start/End: Complemental strand, 1132290 - 1132156
Alignment:
Q  140 agagtttaattttgatgcactgtcaatgtaaaatgttttacactgtcaacacattataatcaatcatgtgtatgactttagaagttgttatgataaaagt 239  Q
    ||||||||||||| || |||||||| |||||||    ||||| |||| |||||| | || || |||||||| || |||||||| | ||||||||||||||    
T  1132290 agagtttaattttcatacactgtcagtgtaaaa-aaattacattgtctacacatcacaaccagtcatgtgtgtgtctttagaattagttatgataaaagt 1132192  T
Q  240 cagatgcttctaatgacttgacaattatgattgatt 275  Q
    || ||| |||||||||  ||||  ||||||||||||    
T  1132191 caaatgtttctaatgatctgacggttatgattgatt 1132156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 17 - 98
Target Start/End: Complemental strand, 17822862 - 17822780
Alignment:
Q  17 aagctgttttcatacattctcccaaacagtctcacagaacttatgccaatagataagct-atataagccaatccaaacaggcc 98  Q
    ||||||||||||||  |||||| ||| |||||||||||||||||| || |||||||||| | |||||  ||||||||||||||    
T  17822862 aagctgttttcatatgttctcctaaatagtctcacagaacttatgtcagtagataagctcaaataagttaatccaaacaggcc 17822780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 15173316 - 15173223
Alignment:
Q  1 ttataaaaattgttacaagctgttttcatacattctcccaaacagtctcacagaacttatgccaatagataagct-atataagccaatccaaac 93  Q
    |||| |||||||| | ||||| |||||||| | ||||||||||||||||||| |||||||| || |||||||| | | ||||| ||||||||||    
T  15173316 ttatgaaaattgtcataagctattttcataaagtctcccaaacagtctcacaaaacttatgtcagtagataagttcaaataagtcaatccaaac 15173223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 36 - 100
Target Start/End: Original strand, 44797972 - 44798037
Alignment:
Q  36 tcccaaacagtctcacagaacttatgccaatagataagc-tatataagccaatccaaacaggccct 100  Q
    ||||||||||||||||| |||||||| || ||||||||| || || ||||||||||||||||||||    
T  44797972 tcccaaacagtctcacaaaacttatgtcagtagataagcttaaatcagccaatccaaacaggccct 44798037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 20 - 95
Target Start/End: Original strand, 8705017 - 8705093
Alignment:
Q  20 ctgttttcatacattctcccaaacagtctcacagaacttatgccaatagataagct-atataagccaatccaaacag 95  Q
    ||||||| |||  ||||||||| |||||||||| |||||||| ||||||||||||| | || |||||||||||||||    
T  8705017 ctgtttttataagttctcccaatcagtctcacaaaacttatgtcaatagataagctcaaatgagccaatccaaacag 8705093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 33 - 100
Target Start/End: Original strand, 18815112 - 18815180
Alignment:
Q  33 ttctcccaaacagtctcacagaacttatgccaatagataagct-atataagccaatccaaacaggccct 100  Q
    ||||| |||||||||||||| ||||||||| | ||| |||||| | |||||||||||||||||||||||    
T  18815112 ttctctcaaacagtctcacaaaacttatgctagtaggtaagctcaaataagccaatccaaacaggccct 18815180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 98
Target Start/End: Complemental strand, 26862 - 26780
Alignment:
Q  17 aagctgttttcatacattctcccaaacagtctcacagaacttatgccaatagataagct-atataagccaatccaaacaggcc 98  Q
    ||||||||||||||  |||||  ||||||||| ||| | ||||||||| | |||||||| | |||||||||||||||||||||    
T  26862 aagctgttttcataatttctcggaaacagtctaacaaagcttatgccagttgataagctcaaataagccaatccaaacaggcc 26780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 140 - 241
Target Start/End: Complemental strand, 21570958 - 21570856
Alignment:
Q  140 agagtttaattttgatgcactgtcaatgtaaaatgtt-ttacactgtcaacacattataatcaatcatgtgtatgactttagaagttgttatgataaaag 238  Q
    ||||||||||||| |||| |||| | ||||||||    ||||| ||||| ||||| | || ||||||||||| ||||||||||||| || ||||||||||    
T  21570958 agagtttaattttcatgcgctgttagtgtaaaataaaattacattgtcagcacatcacaaccaatcatgtgtgtgactttagaagtcgtcatgataaaag 21570859  T
Q  239 tca 241  Q
    |||    
T  21570858 tca 21570856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 98
Target Start/End: Complemental strand, 39691146 - 39691064
Alignment:
Q  17 aagctgttttcatacattctcccaaacagtctcacagaacttatgccaatagataagct-atataagccaatccaaacaggcc 98  Q
    ||||||||  |||| |||||| |||||||||||||| ||||||||| | |||||||||| | ||||| |||| ||||||||||    
T  39691146 aagctgttcccataaattctctcaaacagtctcacaaaacttatgctagtagataagctcaaataagtcaattcaaacaggcc 39691064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 6 - 75
Target Start/End: Original strand, 22030265 - 22030334
Alignment:
Q  6 aaaattgttacaagctgttttcatacattctcccaaacagtctcacagaacttatgccaatagataagct 75  Q
    |||||||| | ||||||||||||||  |||||||||| || |||||| ||||||||| |||||| |||||    
T  22030265 aaaattgtcataagctgttttcataagttctcccaaataggctcacaaaacttatgctaatagacaagct 22030334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 33 - 100
Target Start/End: Original strand, 24169352 - 24169420
Alignment:
Q  33 ttctcccaaacagtctcacagaacttatgccaatagataagctat-ataagccaatccaaacaggccct 100  Q
    ||||| |||| ||||||||| ||||||||||| ||||||| || | ||||||||||||||||| |||||    
T  24169352 ttctctcaaatagtctcacaaaacttatgccagtagataaactctaataagccaatccaaacaagccct 24169420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 42404035 - 42403936
Alignment:
Q  1 ttataaaaattgttacaagctgttttcatacattctcccaaacagtctcacagaacttatgccaatagataagct-atataagccaatccaaacaggccc 99  Q
    |||| |||||||| | |||||||||||| | ||||||||||| || | |||| |||||||| || | |||||||| | ||||| ||||||||||||||||    
T  42404035 ttatgaaaattgtcataagctgttttcagaaattctcccaaatag-cacacaaaacttatgtcagttgataagctcaaataagtcaatccaaacaggccc 42403937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 17 - 95
Target Start/End: Complemental strand, 13126573 - 13126494
Alignment:
Q  17 aagctgttttcatacattctcccaaacagtctcacagaacttatgccaatagataagct-atataagccaatccaaacag 95  Q
    |||||||||| |||  |||| ||||||||||||||| ||||||||  | ||| |||||| | ||||||||||||||||||    
T  13126573 aagctgtttttataagttcttccaaacagtctcacaaaacttatgttagtaggtaagctaaaataagccaatccaaacag 13126494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 138 - 221
Target Start/End: Complemental strand, 45387321 - 45387238
Alignment:
Q  138 ttagagtttaattttgatgcactgtcaatgtaaaatgttttacactgtcaacacattataatcaatcatgtgtatgactttaga 221  Q
    |||||||| ||||||||| ||   ||||||||||||||||||||||  ||||| || | || ||||||| | ||||||||||||    
T  45387321 ttagagttcaattttgatacatcatcaatgtaaaatgttttacactaccaacaaatcacaaccaatcatatttatgactttaga 45387238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 101
Target Start/End: Complemental strand, 35571612 - 35571543
Alignment:
Q  33 ttctcccaaacagtctcacagaacttatgccaatagataagct-atataagccaatccaaacaggcccta 101  Q
    |||||||||||  || |||| ||||||||| | |||||||||| | |||||||||||||||||| |||||    
T  35571612 ttctcccaaactatcccacaaaacttatgctagtagataagctcaaataagccaatccaaacagacccta 35571543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 96
Target Start/End: Complemental strand, 40831027 - 40830947
Alignment:
Q  17 aagctgttt-tcatacattctcccaaacagtctcacagaacttatgccaatagataagct-atataagccaatccaaacagg 96  Q
    ||||||||| |||||  |||| || |||||||||||| |||||||| ||||||||||||| | || ||||||||||||||||    
T  40831027 aagctgtttctcataatttcttccgaacagtctcacaaaacttatg-caatagataagctcaaattagccaatccaaacagg 40830947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 61
Target Start/End: Complemental strand, 49940164 - 49940120
Alignment:
Q  17 aagctgttttcatacattctcccaaacagtctcacagaacttatg 61  Q
    ||||||||||||||  ||||| |||||||||||||| ||||||||    
T  49940164 aagctgttttcataagttctctcaaacagtctcacaaaacttatg 49940120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 17 - 96
Target Start/End: Complemental strand, 16937880 - 16937800
Alignment:
Q  17 aagctgttttcatacattctcccaaacagtctcacagaacttatgccaatagataagct-atataagccaatccaaacagg 96  Q
    ||||||||||||||  |||| ||||||| ||||||| ||||||||| | |||||||||| | |||||||||||||||||||    
T  16937880 aagctgttttcataagttcttccaaacactctcacaaaacttatgctagtagataagctcaaataagccaatccaaacagg 16937800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 17 - 104
Target Start/End: Complemental strand, 34102310 - 34102222
Alignment:
Q  17 aagctgttttcatacattctcccaaacagtctcacagaacttatgccaatagataagct-atataagccaatccaaacaggccctaagt 104  Q
    ||||| |||||||| |||| |||||||||| ||||| ||||||||||||||| |||||| | |||||  | ||||||||||||||||||    
T  34102310 aagctattttcataaattcccccaaacagtgtcacaaaacttatgccaatagttaagctcaaataagtgattccaaacaggccctaagt 34102222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 17 - 107
Target Start/End: Complemental strand, 12433170 - 12433079
Alignment:
Q  17 aagctgttttcatacattctcccaaacagtctcacagaacttatgccaatagataagct-atataagccaatccaaacaggccctaagtatg 107  Q
    ||||| ||||||||  |||||||||||| ||||||| ||| ||||||| || ||||| | | ||||||||||||||||||||||| ||||||    
T  12433170 aagctattttcataacttctcccaaacaatctcacaaaacctatgccagtaaataagttcaaataagccaatccaaacaggcccttagtatg 12433079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 17 - 99
Target Start/End: Original strand, 10640026 - 10640109
Alignment:
Q  17 aagctgttttcatacattctcccaaacagtctcacagaacttatgccaatagataagct-atataagccaatccaaacaggccc 99  Q
    ||||||||||||||  |||||||||||| | ||||| |||||||| || ||||||| || | |||||| |||||||||||||||    
T  10640026 aagctgttttcataagttctcccaaacaatatcacaaaacttatgtcagtagataaactcaaataagctaatccaaacaggccc 10640109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 100
Target Start/End: Original strand, 43300953 - 43301035
Alignment:
Q  19 gctgttttcatacattctcccaaacagtctcacagaacttatgccaatagataagct-atataagccaatccaaacaggccct 100  Q
    |||||||| |||  ||||||| |||||||||| | ||||||||||| || ||||||| | ||||||||||||||||| |||||    
T  43300953 gctgtttttataacttctccccaacagtctcataaaacttatgccattatataagctcaaataagccaatccaaacatgccct 43301035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 20 - 95
Target Start/End: Original strand, 32941545 - 32941622
Alignment:
Q  20 ctgttttcatacattctcccaaacagtctcacagaacttatgccaatagat-aagctat-ataagccaatccaaacag 95  Q
    |||||||||||  ||||||||||| ||||||||||||||||| || ||||| ||||| | ||||| ||||||||||||    
T  32941545 ctgttttcataagttctcccaaacggtctcacagaacttatgtcagtagataaagctctaataagtcaatccaaacag 32941622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 17 - 97
Target Start/End: Original strand, 32942667 - 32942748
Alignment:
Q  17 aagctgttttcatacattctcccaaacagtctcacagaacttatgccaatagataagct-atataagccaatccaaacaggc 97  Q
    ||||||| |||||| ||||||||||||||||  ||| |||||||| || |||| |||||  |||||| ||||||||||||||    
T  32942667 aagctgtattcataaattctcccaaacagtcaaacaaaacttatgtcagtagaaaagctcgtataagtcaatccaaacaggc 32942748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 139 - 224
Target Start/End: Original strand, 43051535 - 43051618
Alignment:
Q  139 tagagtttaattttgatgcactgtcaatgtaaaatgttttacactgtcaacacattataatcaatcatgtgtatgactttagaagt 224  Q
    ||||||||||||||||| | | |||||||||||| ||||||||||||||||| ||   ||||| ||||  ||||||||||||||||    
T  43051535 tagagtttaattttgatacgcagtcaatgtaaaa-gttttacactgtcaaca-atcgcaatcattcataggtatgactttagaagt 43051618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 95
Target Start/End: Complemental strand, 1773101 - 1773024
Alignment:
Q  17 aagctgttttcatacattctcccaaacagtctcacagaacttatgccaatagataagct-atataagccaatccaaacag 95  Q
    ||||||||||||||  ||||||||  |||||||||| ||||||||  | |||||||||| | ||||||||||||||||||    
T  1773101 aagctgttttcataagttctccca--cagtctcacaaaacttatggaagtagataagctaaaataagccaatccaaacag 1773024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 100
Target Start/End: Complemental strand, 7705995 - 7705911
Alignment:
Q  17 aagctgttttcatacattctcccaaacagtctcacagaacttatgccaatagataagct-atataagccaatccaaacaggccct 100  Q
    ||||||||||||||  |||||||||| ||  ||||| ||||||||| | |||||| ||| | ||||| |||||||||||||||||    
T  7705995 aagctgttttcataagttctcccaaagagcgtcacaaaacttatgctagtagatatgctcaaataagtcaatccaaacaggccct 7705911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 212 - 275
Target Start/End: Complemental strand, 7705379 - 7705316
Alignment:
Q  212 tgactttagaagttgttatgataaaagtcagatgcttctaatgacttgacaattatgattgatt 275  Q
    |||||||| |||| |||||||||||||||| ||| ||| |||||| ||||  ||||||||||||    
T  7705379 tgactttaaaagtggttatgataaaagtcaaatgtttccaatgacctgactgttatgattgatt 7705316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 32 - 102
Target Start/End: Complemental strand, 25461629 - 25461559
Alignment:
Q  32 attctcccaaacagtctcacagaacttatgccaatagataagct-atataagccaatccaaacaggccctaa 102  Q
    ||||| ||||||||| ||||| |||||||||  ||||||||||| | |||||||||||||||| ||||||||    
T  25461629 attctaccaaacagtatcaca-aacttatgctgatagataagctcaaataagccaatccaaacgggccctaa 25461559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 75
Target Start/End: Original strand, 12425662 - 12425704
Alignment:
Q  33 ttctcccaaacagtctcacagaacttatgccaatagataagct 75  Q
    |||||||||||||||||||| |||||||| || ||||||||||    
T  12425662 ttctcccaaacagtctcacaaaacttatgacagtagataagct 12425704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 224
Target Start/End: Complemental strand, 16252685 - 16252643
Alignment:
Q  182 ctgtcaacacattataatcaatcatgtgtatgactttagaagt 224  Q
    |||||||||||| | |||||||||||||| |||||||||||||    
T  16252685 ctgtcaacacatcacaatcaatcatgtgtgtgactttagaagt 16252643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 106
Target Start/End: Original strand, 32372701 - 32372775
Alignment:
Q  33 ttctcccaaacagtctcacagaacttatgccaatagataa-gctatataagccaatccaaacaggccctaagtat 106  Q
    |||| ||||||||||||||| ||||||||||| ||||||| || | |||||||||| || ||| ||||| |||||    
T  32372701 ttcttccaaacagtctcacaaaacttatgccagtagataaggccaaataagccaatacatacaagcccttagtat 32372775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 67
Target Start/End: Original strand, 39248171 - 39248221
Alignment:
Q  17 aagctgttttcatacattctcccaaacagtctcacagaacttatgccaata 67  Q
    |||||||||| |||  |||||||||||||||||||| ||||||||| ||||    
T  39248171 aagctgtttttataagttctcccaaacagtctcacaaaacttatgctaata 39248221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 73
Target Start/End: Complemental strand, 41981698 - 41981644
Alignment:
Q  19 gctgttttcatacattctcccaaacagtctcacagaacttatgccaatagataag 73  Q
    ||||||||||||  |||||||||||||||||||| |||| |||| | ||||||||    
T  41981698 gctgttttcataagttctcccaaacagtctcacaaaactaatgctagtagataag 41981644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 98
Target Start/End: Original strand, 42100400 - 42100466
Alignment:
Q  33 ttctcccaaacagtctcacagaacttatgccaatagataagct-atataagccaatccaaacaggcc 98  Q
    ||||| || |||||| |||| || ||||||||||||||||||| | ||||||| |||||||||||||    
T  42100400 ttctctcacacagtcacacaaaatttatgccaatagataagctcaaataagcccatccaaacaggcc 42100466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 62
Target Start/End: Complemental strand, 1465017 - 1464972
Alignment:
Q  17 aagctgttttcatacattctcccaaacagtctcacagaacttatgc 62  Q
    ||||||||||||||  ||||||| ||||||||| ||||||||||||    
T  1465017 aagctgttttcataagttctcccgaacagtctcgcagaacttatgc 1464972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 93
Target Start/End: Original strand, 9107163 - 9107240
Alignment:
Q  17 aagctgttttcatacattctcccaaacagtctcacagaacttatgccaatagataagct-atataagccaatccaaac 93  Q
    |||||||||||||   |||||||||||| ||||||| |||||||| || ||||||| || | ||||| ||||||||||    
T  9107163 aagctgttttcatgagttctcccaaacattctcacaaaacttatgtcactagataaactcaaataagtcaatccaaac 9107240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 58
Target Start/End: Complemental strand, 16457976 - 16457935
Alignment:
Q  17 aagctgttttcatacattctcccaaacagtctcacagaactt 58  Q
    ||||||||||||||  |||||||||||||||||||| |||||    
T  16457976 aagctgttttcataagttctcccaaacagtctcacaaaactt 16457935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 101
Target Start/End: Complemental strand, 34736508 - 34736439
Alignment:
Q  33 ttctcccaaacagtctcacagaacttatgccaatagataagct-atataagccaatccaaacaggcccta 101  Q
    ||||||||||| |||||||| |||||||| ||  ||||||||| | ||||| ||||||||||| ||||||    
T  34736508 ttctcccaaactgtctcacaaaacttatgtcaccagataagctcaaataagtcaatccaaacatgcccta 34736439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 72
Target Start/End: Complemental strand, 35445847 - 35445786
Alignment:
Q  11 tgttacaagctgttttcatacattctcccaaacagtctcacagaacttatgccaatagataa 72  Q
    ||||| |||||||||||||| |||||  |||| ||||||||| |||||||| || |||||||    
T  35445847 tgttataagctgttttcataaattctgtcaaagagtctcacaaaacttatgtcagtagataa 35445786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 146 - 182
Target Start/End: Complemental strand, 10992071 - 10992035
Alignment:
Q  146 taattttgatgcactgtcaatgtaaaatgttttacac 182  Q
    ||||||||||||||||| |||||||||| ||||||||    
T  10992071 taattttgatgcactgttaatgtaaaatattttacac 10992035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 23 - 75
Target Start/End: Original strand, 15015922 - 15015974
Alignment:
Q  23 ttttcatacattctcccaaacagtctcacagaacttatgccaatagataagct 75  Q
    ||||||||  |||||||||||||||||||| | |||||| || ||||||||||    
T  15015922 ttttcataagttctcccaaacagtctcacaaagcttatgtcagtagataagct 15015974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 17 - 72
Target Start/End: Complemental strand, 9559419 - 9559364
Alignment:
Q  17 aagctgttttcatacattctcccaaacagtctcacagaacttatgccaatagataa 72  Q
    ||||||||||||||  |||||| ||||||||||||| |||||||||||||||||||    
T  9559419 aagctgttttcataacttctcctaaacagtctcacaaaacttatgccaatagataa 9559364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 101
Target Start/End: Original strand, 6538587 - 6538672
Alignment:
Q  17 aagctgttttcatacattctcccaaacagtctcacagaacttatgccaatagataagct-atataagccaatccaaacaggcccta 101  Q
    |||||||||||||  |||||||| |||||||||||  ||||||||||| || |||| || | ||||| ||||||||||||||||||    
T  6538587 aagctgttttcatcaattctcccgaacagtctcaccaaacttatgccactacataaactcaaataagacaatccaaacaggcccta 6538672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 3 - 94
Target Start/End: Original strand, 4163212 - 4163304
Alignment:
Q  3 ataaaaattgttacaagctgttttcatacattctcccaaacagtctcacagaacttatgccaatagataagct-atataagccaatccaaaca 94  Q
    ||||||||||| | ||| ||||||||||  ||||| | |||||||||  | ||||||||||| |||||||||| | |||||||||||||||||    
T  4163212 ataaaaattgtcataagttgttttcataggttctcacgaacagtctcgtaaaacttatgccagtagataagctcaaataagccaatccaaaca 4163304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 3 - 94
Target Start/End: Original strand, 4224833 - 4224925
Alignment:
Q  3 ataaaaattgttacaagctgttttcatacattctcccaaacagtctcacagaacttatgccaatagataagct-atataagccaatccaaaca 94  Q
    ||||||||||| | ||| ||||||||||  ||||| | |||||||||  | ||||||||||| |||||||||| | |||||||||||||||||    
T  4224833 ataaaaattgtcataagttgttttcataggttctcacgaacagtctcgtaaaacttatgccagtagataagctcaaataagccaatccaaaca 4224925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 33 - 102
Target Start/End: Original strand, 848078 - 848147
Alignment:
Q  33 ttctcccaaacagtctcacagaacttatgccaatagataagct-atataagccaatccaaacaggccctaa 102  Q
    |||| ||||||||||||||| |||||||| | ||||||||||| | ||||| |||||||||||||||||||    
T  848078 ttcttccaaacagtctcacaaaacttatg-ctatagataagctcaaataaggcaatccaaacaggccctaa 848147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 75
Target Start/End: Complemental strand, 33074949 - 33074895
Alignment:
Q  21 tgttttcatacattctcccaaacagtctcacagaacttatgccaatagataagct 75  Q
    ||||||||| ||||||||| |||||||||||| |||| ||| |||||||||||||    
T  33074949 tgttttcatccattctccccaacagtctcacaaaactcatggcaatagataagct 33074895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 17 - 78
Target Start/End: Original strand, 30536576 - 30536637
Alignment:
Q  17 aagctgttttcatacattctcccaaacagtctcacagaacttatgccaatagataagctata 78  Q
    ||||| ||||||||  | |||||||||||||||||| |||||| |||| |||||||||||||    
T  30536576 aagctattttcataagtcctcccaaacagtctcacaaaacttacgccagtagataagctata 30536637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 94
Target Start/End: Complemental strand, 10645378 - 10645304
Alignment:
Q  21 tgttttcatacattctcccaaacagtctcacagaacttatgccaatagataagct-atataagccaatccaaaca 94  Q
    ||||||||||  |||||||||||||||| ||| |||||||| || ||||||| || | || ||||||||||||||    
T  10645378 tgttttcataagttctcccaaacagtcttacaaaacttatgtcattagataacctcaaattagccaatccaaaca 10645304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 98
Target Start/End: Original strand, 30926581 - 30926674
Alignment:
Q  6 aaaattgttacaagctgttttcatacattctcccaaacagtctcacagaacttatgccaatagataagct-atataagccaatccaaacaggcc 98  Q
    |||||||| | ||||||||||||||  |||| |||||||||||||   || ||||||||  | ||||||| | ||||||||| |||||||||||    
T  30926581 aaaattgtcataagctgttttcataagttcttccaaacagtctcatcaaatttatgccagaaaataagctcaaataagccaaaccaaacaggcc 30926674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 67
Target Start/End: Complemental strand, 34009496 - 34009447
Alignment:
Q  18 agctgttttcatacattctcccaaacagtctcacagaacttatgccaata 67  Q
    ||||||||||||| |||||||||||| |||||||| | | ||||||||||    
T  34009496 agctgttttcataaattctcccaaactgtctcacaaatcatatgccaata 34009447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 41 - 100
Target Start/End: Complemental strand, 35069585 - 35069525
Alignment:
Q  41 aacagtctcacagaacttatgccaatagataagct-atataagccaatccaaacaggccct 100  Q
    |||||||| ||| |||||||| || |||||||||| | |||||||||| ||||||||||||    
T  35069585 aacagtcttacaaaacttatgtcagtagataagctcaaataagccaatacaaacaggccct 35069525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 71
Target Start/End: Original strand, 24694 - 24748
Alignment:
Q  17 aagctgttttcatacattctcccaaacagtctcacagaacttatgccaatagata 71  Q
    |||||||||| |||  |||||||||||||||||||| ||| ||||||||||||||    
T  24694 aagctgttttgataagttctcccaaacagtctcacaaaacatatgccaatagata 24748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0449 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0449
Description:

Target: scaffold0449; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 224
Target Start/End: Complemental strand, 10670 - 10587
Alignment:
Q  139 tagagtttaattttgatgcactgtcaatgtaaaatgttttacactgtcaacacattataatcaatcatgtgtatgactttagaagt 224  Q
    ||||||||||||||||| | | |||||||||||| |||||| |||||||||| ||   ||||| ||||  ||||||||||||||||    
T  10670 tagagtttaattttgatacgcagtcaatgtaaaa-gttttatactgtcaaca-atcgcaatcattcataggtatgactttagaagt 10587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University