View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2510_high_12 (Length: 360)

Name: NF2510_high_12
Description: NF2510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2510_high_12
NF2510_high_12
[»] chr2 (19 HSPs)
chr2 (19-188)||(448467-448634)
chr2 (282-350)||(9706965-9707033)
chr2 (282-350)||(14541509-14541577)
chr2 (268-350)||(13215571-13215653)
chr2 (275-350)||(13754134-13754208)
chr2 (282-344)||(32543784-32543846)
chr2 (282-335)||(3376274-3376327)
chr2 (282-335)||(8443871-8443924)
chr2 (282-335)||(13965800-13965853)
chr2 (282-335)||(43077485-43077538)
chr2 (282-350)||(44360611-44360679)
chr2 (282-341)||(13849712-13849771)
chr2 (303-350)||(34884556-34884603)
chr2 (304-350)||(13000930-13000976)
chr2 (282-344)||(37116600-37116662)
chr2 (285-350)||(35158351-35158416)
chr2 (282-350)||(7529701-7529769)
chr2 (255-332)||(10812395-10812474)
chr2 (282-350)||(36375751-36375819)
[»] chr7 (22 HSPs)
chr7 (282-350)||(33258059-33258127)
chr7 (286-350)||(35112607-35112671)
chr7 (278-335)||(3838055-3838112)
chr7 (282-343)||(41888991-41889052)
chr7 (269-350)||(47408291-47408372)
chr7 (282-350)||(10227434-10227502)
chr7 (282-350)||(28608772-28608840)
chr7 (282-350)||(42841863-42841931)
chr7 (283-344)||(24233718-24233779)
chr7 (282-343)||(30866733-30866794)
chr7 (282-335)||(31815066-31815119)
chr7 (282-350)||(19327788-19327856)
chr7 (286-350)||(36298175-36298239)
chr7 (269-337)||(47459829-47459897)
chr7 (282-332)||(8382022-8382072)
chr7 (282-332)||(17896488-17896538)
chr7 (282-344)||(35746642-35746704)
chr7 (282-350)||(26724102-26724171)
chr7 (280-337)||(36340577-36340634)
chr7 (282-350)||(18194211-18194279)
chr7 (282-350)||(24283757-24283825)
chr7 (286-350)||(44820608-44820672)
[»] chr1 (40 HSPs)
chr1 (78-152)||(4775398-4775472)
chr1 (282-350)||(10506989-10507057)
chr1 (282-350)||(32348156-32348223)
chr1 (281-342)||(30702280-30702341)
chr1 (280-345)||(42800289-42800354)
chr1 (282-350)||(5598223-5598291)
chr1 (282-350)||(35700366-35700434)
chr1 (282-350)||(36850815-36850883)
chr1 (282-341)||(35605785-35605844)
chr1 (282-337)||(48174664-48174719)
chr1 (286-343)||(1039067-1039124)
chr1 (286-343)||(1045973-1046030)
chr1 (285-350)||(32994463-32994528)
chr1 (282-350)||(9127847-9127915)
chr1 (282-350)||(31487770-31487838)
chr1 (282-350)||(46096724-46096792)
chr1 (282-350)||(51974162-51974230)
chr1 (282-350)||(52649720-52649788)
chr1 (282-319)||(1427888-1427925)
chr1 (282-335)||(13507963-13508016)
chr1 (282-335)||(13515151-13515204)
chr1 (282-335)||(19929457-19929510)
chr1 (282-335)||(37437044-37437097)
chr1 (283-335)||(1677391-1677443)
chr1 (278-350)||(2059799-2059871)
chr1 (282-350)||(12721618-12721686)
chr1 (286-342)||(18344512-18344568)
chr1 (282-350)||(32168303-32168371)
chr1 (282-350)||(36318530-36318598)
chr1 (269-332)||(20605602-20605665)
chr1 (269-335)||(29830946-29831012)
chr1 (282-332)||(42787144-42787194)
chr1 (283-344)||(1038271-1038332)
chr1 (283-344)||(1045177-1045238)
chr1 (282-343)||(9362158-9362219)
chr1 (282-350)||(4100900-4100968)
chr1 (306-350)||(17013604-17013648)
chr1 (282-350)||(37735130-37735198)
chr1 (286-350)||(40926748-40926812)
chr1 (282-350)||(51613589-51613657)
[»] chr8 (29 HSPs)
chr8 (277-350)||(29091074-29091147)
chr8 (282-350)||(23855735-23855803)
chr8 (269-350)||(14061130-14061211)
chr8 (284-350)||(27911668-27911734)
chr8 (284-350)||(27958087-27958153)
chr8 (282-350)||(1245490-1245558)
chr8 (282-350)||(18842707-18842775)
chr8 (282-350)||(26740131-26740199)
chr8 (282-350)||(35029724-35029792)
chr8 (282-337)||(1739884-1739939)
chr8 (275-337)||(8672685-8672747)
chr8 (282-344)||(31964753-31964815)
chr8 (305-347)||(35052303-35052345)
chr8 (282-350)||(167471-167540)
chr8 (282-350)||(8554010-8554078)
chr8 (282-350)||(12248764-12248832)
chr8 (282-350)||(17074576-17074644)
chr8 (282-350)||(17573626-17573694)
chr8 (282-338)||(23793265-23793321)
chr8 (286-350)||(41643488-41643552)
chr8 (282-350)||(43641983-43642051)
chr8 (268-343)||(6757591-6757666)
chr8 (278-332)||(26062903-26062957)
chr8 (269-350)||(2888449-2888530)
chr8 (282-335)||(7605894-7605946)
chr8 (285-350)||(11707451-11707516)
chr8 (282-343)||(13174114-13174175)
chr8 (282-335)||(33935054-33935107)
chr8 (282-343)||(41701476-41701537)
[»] scaffold0343 (1 HSPs)
scaffold0343 (282-350)||(7602-7670)
[»] chr5 (36 HSPs)
chr5 (282-350)||(12722950-12723018)
chr5 (282-344)||(13703263-13703325)
chr5 (282-350)||(5842984-5843052)
chr5 (282-350)||(12784434-12784502)
chr5 (269-335)||(4017589-4017655)
chr5 (284-350)||(12637940-12638006)
chr5 (268-342)||(18437300-18437374)
chr5 (282-343)||(13461177-13461238)
chr5 (269-350)||(31803484-31803565)
chr5 (282-350)||(7408491-7408559)
chr5 (286-350)||(9958878-9958942)
chr5 (282-350)||(28024250-28024318)
chr5 (286-344)||(3243962-3244020)
chr5 (269-347)||(7734762-7734840)
chr5 (282-332)||(8825235-8825285)
chr5 (282-344)||(14793781-14793843)
chr5 (304-350)||(23418706-23418752)
chr5 (282-343)||(425291-425351)
chr5 (282-350)||(6008044-6008113)
chr5 (281-350)||(6330981-6331050)
chr5 (284-344)||(2133901-2133960)
chr5 (275-335)||(6754163-6754223)
chr5 (282-350)||(26906650-26906718)
chr5 (285-337)||(31985044-31985096)
chr5 (283-350)||(37633836-37633903)
chr5 (283-350)||(37809919-37809986)
chr5 (285-335)||(3892986-3893036)
chr5 (282-344)||(6689765-6689827)
chr5 (282-335)||(5119353-5119406)
chr5 (285-350)||(37306693-37306758)
chr5 (282-335)||(38297516-38297569)
chr5 (303-343)||(1795129-1795169)
chr5 (268-332)||(18794961-18795025)
chr5 (286-350)||(24074833-24074897)
chr5 (282-350)||(39893800-39893868)
chr5 (282-350)||(42911710-42911778)
[»] chr4 (25 HSPs)
chr4 (282-350)||(54231720-54231788)
chr4 (277-350)||(47596603-47596676)
chr4 (282-350)||(33809268-33809336)
chr4 (285-344)||(18135048-18135107)
chr4 (268-335)||(36659408-36659475)
chr4 (267-350)||(42629498-42629581)
chr4 (285-344)||(49122258-49122317)
chr4 (281-350)||(20087352-20087420)
chr4 (282-350)||(53467546-53467615)
chr4 (278-350)||(31984143-31984215)
chr4 (282-350)||(45725717-45725785)
chr4 (282-350)||(52061739-52061807)
chr4 (303-350)||(52057467-52057514)
chr4 (278-335)||(52677157-52677214)
chr4 (282-350)||(23719779-23719847)
chr4 (282-350)||(38542271-38542339)
chr4 (282-350)||(49089087-49089155)
chr4 (268-350)||(9220022-9220104)
chr4 (304-350)||(26933789-26933835)
chr4 (282-343)||(55935295-55935356)
chr4 (282-350)||(3036564-3036632)
chr4 (286-350)||(3436066-3436130)
chr4 (268-332)||(12252291-12252355)
chr4 (285-345)||(36292802-36292862)
chr4 (303-343)||(52977945-52977985)
[»] chr3 (18 HSPs)
chr3 (278-350)||(3643192-3643264)
chr3 (282-350)||(33874546-33874614)
chr3 (282-350)||(48152163-48152231)
chr3 (282-350)||(48214233-48214301)
chr3 (282-350)||(35315310-35315378)
chr3 (283-350)||(51065061-51065128)
chr3 (282-352)||(45145304-45145374)
chr3 (278-350)||(32853356-32853428)
chr3 (270-334)||(44543719-44543783)
chr3 (282-344)||(47104155-47104217)
chr3 (269-332)||(51219080-51219143)
chr3 (268-350)||(20848710-20848792)
chr3 (285-335)||(39866852-39866902)
chr3 (282-332)||(45513318-45513368)
chr3 (310-344)||(55141504-55141538)
chr3 (282-335)||(32980833-32980886)
chr3 (286-350)||(17102932-17102996)
chr3 (282-350)||(41425807-41425875)
[»] scaffold0009 (1 HSPs)
scaffold0009 (269-350)||(147109-147190)
[»] chr6 (19 HSPs)
chr6 (282-350)||(9838117-9838185)
chr6 (282-350)||(11129009-11129077)
chr6 (278-350)||(11676606-11676678)
chr6 (282-350)||(24949285-24949353)
chr6 (282-350)||(30416070-30416138)
chr6 (282-344)||(7632032-7632094)
chr6 (284-340)||(7056137-7056193)
chr6 (282-350)||(22050226-22050294)
chr6 (282-350)||(23777474-23777542)
chr6 (282-350)||(26470718-26470786)
chr6 (282-350)||(26485680-26485748)
chr6 (275-350)||(19645710-19645785)
chr6 (282-348)||(30237420-30237485)
chr6 (282-332)||(30388962-30389012)
chr6 (286-335)||(8176626-8176675)
chr6 (278-335)||(17123976-17124033)
chr6 (305-350)||(22400582-22400627)
chr6 (282-350)||(7170330-7170398)
chr6 (282-350)||(34730738-34730805)
[»] scaffold2146 (1 HSPs)
scaffold2146 (282-345)||(735-798)
[»] scaffold0135 (1 HSPs)
scaffold0135 (268-350)||(30673-30755)
[»] scaffold0001 (1 HSPs)
scaffold0001 (285-350)||(419490-419555)
[»] scaffold0325 (1 HSPs)
scaffold0325 (282-350)||(493-561)
[»] scaffold0274 (1 HSPs)
scaffold0274 (282-350)||(235-302)


Alignment Details
Target: chr2 (Bit Score: 115; Significance: 2e-58; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 19 - 188
Target Start/End: Complemental strand, 448634 - 448467
Alignment:
Q  19 gatggctgtaataatatcagtaaatggaaatcatatcttatactgtagtaattagccaaatagtatagttgactgttccatgatttcaacaatattcatc 118  Q
    ||||| ||||||||||||||||||||||||||||||||||||     |||| ||||||| |||||||||||||||||||||||||| | |||||||||||    
T  448634 gatgggtgtaataatatcagtaaatggaaatcatatcttata-----gtaactagccaattagtatagttgactgttccatgatttgagcaatattcatc 448540  T
Q  119 attgtattccatgtatatatggctacacaaatgtaaatatattgaattgacaaaa---tacaaaattaactga 188  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||   |||||||||||||||    
T  448539 attgtattccatgtatatatggctacacaaatgtaaatatattgaattaacaaaatactacaaaattaactga 448467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 282 - 350
Target Start/End: Complemental strand, 9707033 - 9706965
Alignment:
Q  282 ttcctttttaattatcatttattgacattttacacaaatcaatacaatcaataaatattactacctttg 350  Q
    ||||||||||||| ||| || ||||||||||||||||| ||||||||||||||||||||||||| ||||    
T  9707033 ttcctttttaattgtcactttttgacattttacacaaaccaatacaatcaataaatattactacttttg 9706965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 282 - 350
Target Start/End: Complemental strand, 14541577 - 14541509
Alignment:
Q  282 ttcctttttaattatcatttattgacattttacacaaatcaatacaatcaataaatattactacctttg 350  Q
    ||||||||||||| ||| || ||||||||||| ||||| ||||||||||||||||||||||||| ||||    
T  14541577 ttcctttttaattgtcactttttgacattttatacaaaccaatacaatcaataaatattactacttttg 14541509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 268 - 350
Target Start/End: Complemental strand, 13215653 - 13215571
Alignment:
Q  268 taatacaacttccattcctttttaattatcatttattgacattttacacaaatcaatacaatcaataaatattactacctttg 350  Q
    |||||| || ||| ||||||||||||| | | || ||||||||||||||||| ||||||| ||||||||| ||||||| ||||    
T  13215653 taatactacctccgttcctttttaattgttactttttgacattttacacaaaccaatacactcaataaatgttactacttttg 13215571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 275 - 350
Target Start/End: Complemental strand, 13754208 - 13754134
Alignment:
Q  275 acttccattcctttttaattatcatttattgacattttacacaaatcaatacaatcaataaatattactacctttg 350  Q
    |||||| ||||||||||||| ||| || ||||||||||||||||| ||| ||||||| ||||| ||||||| ||||    
T  13754208 acttccgttcctttttaattgtcactt-ttgacattttacacaaaccaagacaatcattaaatgttactacttttg 13754134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 282 - 344
Target Start/End: Original strand, 32543784 - 32543846
Alignment:
Q  282 ttcctttttaattatcatttattgacattttacacaaatcaatacaatcaataaatattacta 344  Q
    ||||||||||||| ||||||  | |||||||||| ||| ||| ||||||||||||||||||||    
T  32543784 ttcctttttaattgtcattttataacattttacataaaccaaaacaatcaataaatattacta 32543846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 282 - 335
Target Start/End: Original strand, 3376274 - 3376327
Alignment:
Q  282 ttcctttttaattatcatttattgacattttacacaaatcaatacaatcaataa 335  Q
    ||||||||||||| |||  | ||||||||||||||||||||| |||||||||||    
T  3376274 ttcctttttaattgtcacattttgacattttacacaaatcaagacaatcaataa 3376327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 282 - 335
Target Start/End: Complemental strand, 8443924 - 8443871
Alignment:
Q  282 ttcctttttaattatcatttattgacattttacacaaatcaatacaatcaataa 335  Q
    ||||||||||||| ||| || ||||||||||||||||| ||| |||||||||||    
T  8443924 ttcctttttaattgtcactttttgacattttacacaaaccaagacaatcaataa 8443871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 282 - 335
Target Start/End: Complemental strand, 13965853 - 13965800
Alignment:
Q  282 ttcctttttaattatcatttattgacattttacacaaatcaatacaatcaataa 335  Q
    ||||||||||||| ||| || ||||||||||||||||| ||| |||||||||||    
T  13965853 ttcctttttaattgtcactttttgacattttacacaaaccaagacaatcaataa 13965800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 282 - 335
Target Start/End: Complemental strand, 43077538 - 43077485
Alignment:
Q  282 ttcctttttaattatcatttattgacattttacacaaatcaatacaatcaataa 335  Q
    ||||||||||||| |||||| || |||||||||||||| ||| |||||||||||    
T  43077538 ttcctttttaattgtcattttttaacattttacacaaaccaagacaatcaataa 43077485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 282 - 350
Target Start/End: Complemental strand, 44360679 - 44360611
Alignment:
Q  282 ttcctttttaattatcatttattgacattttacacaaatcaatacaatcaataaatattactacctttg 350  Q
    ||||||||||||| |||  | ||||||||||||||||| ||| ||||||||||| | ||||||| ||||    
T  44360679 ttcctttttaattgtcacattttgacattttacacaaaccaagacaatcaataattgttactacttttg 44360611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 282 - 341
Target Start/End: Original strand, 13849712 - 13849771
Alignment:
Q  282 ttcctttttaattatcatttattgacattttacacaaatcaatacaatcaataaatatta 341  Q
    ||||||||||||| |||||| |||| |||||| | ||| ||| |||||||||||||||||    
T  13849712 ttcctttttaattgtcattttttgatattttatataaaccaaaacaatcaataaatatta 13849771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 303 - 350
Target Start/End: Original strand, 34884556 - 34884603
Alignment:
Q  303 ttgacattttacacaaatcaatacaatcaataaatattactacctttg 350  Q
    ||||||||||||||||| ||| | ||||||||||||||||||| ||||    
T  34884556 ttgacattttacacaaaccaagataatcaataaatattactacttttg 34884603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 304 - 350
Target Start/End: Original strand, 13000930 - 13000976
Alignment:
Q  304 tgacattttacacaaatcaatacaatcaataaatattactacctttg 350  Q
    ||||||||||||||||| || ||||||||||||| ||||||| ||||    
T  13000930 tgacattttacacaaattaagacaatcaataaatgttactacttttg 13000976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 282 - 344
Target Start/End: Original strand, 37116600 - 37116662
Alignment:
Q  282 ttcctttttaattatcatttattgacattttacacaaatcaatacaatcaataaatattacta 344  Q
    ||||||||||||| |||||   |||||||||||||||| ||| |||| |||||||| ||||||    
T  37116600 ttcctttttaattgtcattctctgacattttacacaaaccaagacaaccaataaatgttacta 37116662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 350
Target Start/End: Original strand, 35158351 - 35158416
Alignment:
Q  285 ctttttaattatcatttattgacattttacacaaatcaatacaatcaataaatattactacctttg 350  Q
    |||||||||| ||| || |||||||||||||  || ||| ||| ||||||||||||||||| ||||    
T  35158351 ctttttaattgtcactttttgacattttacatgaaccaagacattcaataaatattactacttttg 35158416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 282 - 350
Target Start/End: Original strand, 7529701 - 7529769
Alignment:
Q  282 ttcctttttaattatcatttattgacattttacacaaatcaatacaatcaataaatattactacctttg 350  Q
    ||||||||||||| |||||| ||| | |||||||||||| || ||||  ||||||| ||||||| ||||    
T  7529701 ttcctttttaattgtcattttttgtctttttacacaaatgaagacaactaataaattttactacttttg 7529769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 255 - 332
Target Start/End: Complemental strand, 10812474 - 10812395
Alignment:
Q  255 aaaaattgttatgtaa--tacaacttccattcctttttaattatcatttattgacattttacacaaatcaatacaatcaa 332  Q
    |||||||||| |||||  ||| || ||| ||||||||||||| |||  | ||||||||||||||||| ||| ||||||||    
T  10812474 aaaaattgttttgtaacatactacctccgttcctttttaattgtcacattttgacattttacacaaaccaagacaatcaa 10812395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 282 - 350
Target Start/End: Complemental strand, 36375819 - 36375751
Alignment:
Q  282 ttcctttttaattatcatttattgacattttacacaaatcaatacaatcaataaatattactacctttg 350  Q
    ||||||||||||| |||  | ||||||||||||||||| ||| |||||||| || |  |||||||||||    
T  36375819 ttcctttttaattgtcacattttgacattttacacaaaccaagacaatcaacaattgatactacctttg 36375751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 1e-23; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 282 - 350
Target Start/End: Complemental strand, 33258127 - 33258059
Alignment:
Q  282 ttcctttttaattatcatttattgacattttacacaaatcaatacaatcaataaatattactacctttg 350  Q
    ||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  33258127 ttcctttttaattgtcattttttgacattttacacaaatcaatacaatcaataaatattactacttttg 33258059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 286 - 350
Target Start/End: Complemental strand, 35112671 - 35112607
Alignment:
Q  286 tttttaattatcatttattgacattttacacaaatcaatacaatcaataaatattactacctttg 350  Q
    ||||||||| ||| || |||||||||||||||||  |||||||||||||||||||||||| ||||    
T  35112671 tttttaattgtcactttttgacattttacacaaacaaatacaatcaataaatattactacttttg 35112607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 278 - 335
Target Start/End: Complemental strand, 3838112 - 3838055
Alignment:
Q  278 tccattcctttttaattatcatttattgacattttacacaaatcaatacaatcaataa 335  Q
    ||||||||||||||||| ||| || |||||||||||| |||||||| |||||||||||    
T  3838112 tccattcctttttaattgtcactttttgacattttacgcaaatcaagacaatcaataa 3838055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 282 - 343
Target Start/End: Original strand, 41888991 - 41889052
Alignment:
Q  282 ttcctttttaattatcatttattgacattttacacaaatcaatacaatcaataaatattact 343  Q
    ||||||||||||||||| ||  |||||||||||||||| ||| ||||||||||||| |||||    
T  41888991 ttcctttttaattatcactttgtgacattttacacaaaccaagacaatcaataaatgttact 41889052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 269 - 350
Target Start/End: Complemental strand, 47408372 - 47408291
Alignment:
Q  269 aatacaacttccattcctttttaattatcatttattgacattttacacaaatcaatacaatcaataaatattactacctttg 350  Q
    ||||| || ||| ||||||||||||| ||| || ||||||||||||||||| ||| ||| ||||||||| ||||||| ||||    
T  47408372 aatactacctccgttcctttttaattgtcactttttgacattttacacaaaccaagacattcaataaatgttactacttttg 47408291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 282 - 350
Target Start/End: Complemental strand, 10227502 - 10227434
Alignment:
Q  282 ttcctttttaattatcatttattgacattttacacaaatcaatacaatcaataaatattactacctttg 350  Q
    ||||||||||||| ||| || || |||||||||||||||||| ||||||||||| |||| |||| ||||    
T  10227502 ttcctttttaattgtcactttttaacattttacacaaatcaagacaatcaataattatttctacttttg 10227434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 282 - 350
Target Start/End: Complemental strand, 28608840 - 28608772
Alignment:
Q  282 ttcctttttaattatcatttattgacattttacacaaatcaatacaatcaataaatattactacctttg 350  Q
    ||||||||||||| |||| | |||| |||||||||||||||| ||||||||||||| || |||| ||||    
T  28608840 ttcctttttaattgtcatattttgatattttacacaaatcaagacaatcaataaatgttgctacttttg 28608772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 282 - 350
Target Start/End: Original strand, 42841863 - 42841931
Alignment:
Q  282 ttcctttttaattatcatttattgacattttacacaaatcaatacaatcaataaatattactacctttg 350  Q
    ||||||||||||| ||| || |||| |||||||||||| ||| ||||||||||||| ||||||| ||||    
T  42841863 ttcctttttaattgtcactttttgatattttacacaaaccaagacaatcaataaatgttactacttttg 42841931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 283 - 344
Target Start/End: Complemental strand, 24233779 - 24233718
Alignment:
Q  283 tcctttttaattatcatttattgacattttacacaaatcaatacaatcaataaatattacta 344  Q
    |||||||||||| |||||| || |||||||||| ||||||| ||| |||||||| |||||||    
T  24233779 tcctttttaattgtcattttttaacattttacaaaaatcaagacattcaataaaaattacta 24233718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 282 - 343
Target Start/End: Original strand, 30866733 - 30866794
Alignment:
Q  282 ttcctttttaattatcatttattgacattttacacaaatcaatacaatcaataaatattact 343  Q
    ||||||||||| | |||||| ||||||||||||||||| ||| ||| ||||||||| |||||    
T  30866733 ttcctttttaactgtcattttttgacattttacacaaaccaagacactcaataaatgttact 30866794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 282 - 335
Target Start/End: Original strand, 31815066 - 31815119
Alignment:
Q  282 ttcctttttaattatcatttattgacattttacacaaatcaatacaatcaataa 335  Q
    ||||||||||||| |||||| || |||||||||||||||||| | |||||||||    
T  31815066 ttcctttttaattgtcattttttaacattttacacaaatcaagataatcaataa 31815119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 282 - 350
Target Start/End: Original strand, 19327788 - 19327856
Alignment:
Q  282 ttcctttttaattatcatttattgacattttacacaaatcaatacaatcaataaatattactacctttg 350  Q
    ||||||||||||| |||  | || |||||||||||||| ||| |||||||||||||||| |||| ||||    
T  19327788 ttcctttttaattgtcacattttaacattttacacaaaccaaaacaatcaataaatattgctacttttg 19327856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 286 - 350
Target Start/End: Original strand, 36298175 - 36298239
Alignment:
Q  286 tttttaattatcatttattgacattttacacaaatcaatacaatcaataaatattactacctttg 350  Q
    ||||||||| |||  | ||||||||||||||||||||| ||||||||||| | ||||||| ||||    
T  36298175 tttttaattgtcacattttgacattttacacaaatcaaaacaatcaataattgttactacttttg 36298239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 269 - 337
Target Start/End: Complemental strand, 47459897 - 47459829
Alignment:
Q  269 aatacaacttccattcctttttaattatcatttattgacattttacacaaatcaatacaatcaataaat 337  Q
    ||||| || ||| ||||||||||||| | |||| |||| |||||||||||||||| ||| |||||||||    
T  47459897 aatactacctccgttcctttttaattgttattttttgatattttacacaaatcaagacattcaataaat 47459829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 282 - 332
Target Start/End: Complemental strand, 8382072 - 8382022
Alignment:
Q  282 ttcctttttaattatcatttattgacattttacacaaatcaatacaatcaa 332  Q
    |||||||||||||||||  | ||||||||||||||||| ||| ||||||||    
T  8382072 ttcctttttaattatcacattttgacattttacacaaaccaagacaatcaa 8382022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 282 - 332
Target Start/End: Original strand, 17896488 - 17896538
Alignment:
Q  282 ttcctttttaattatcatttattgacattttacacaaatcaatacaatcaa 332  Q
    ||||||||||||| |||  | ||||||||||||||||||||| ||||||||    
T  17896488 ttcctttttaattgtcacattttgacattttacacaaatcaagacaatcaa 17896538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 282 - 344
Target Start/End: Original strand, 35746642 - 35746704
Alignment:
Q  282 ttcctttttaattatcatttattgacattttacacaaatcaatacaatcaataaatattacta 344  Q
    ||||||||||||| ||| || || |||||||||| |||| || ||||||||||||| ||||||    
T  35746642 ttcctttttaattgtcactttttaacattttacataaattaagacaatcaataaatgttacta 35746704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 350
Target Start/End: Complemental strand, 26724171 - 26724102
Alignment:
Q  282 ttcctttttaattatcat-ttattgacattttacacaaatcaatacaatcaataaatattactacctttg 350  Q
    ||||||||||||| |||  || ||||||||||||||||| ||| ||||||||| | ||||||||| ||||    
T  26724171 ttcctttttaattgtcacatttttgacattttacacaaaccaagacaatcaatgattattactacttttg 26724102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 280 - 337
Target Start/End: Complemental strand, 36340634 - 36340577
Alignment:
Q  280 cattcctttttaattatcatttattgacattttacacaaatcaatacaatcaataaat 337  Q
    ||||||||||||||| | |||| || |||||||||||||| ||| ||||||| |||||    
T  36340634 cattcctttttaattgttatttttttacattttacacaaaccaagacaatcagtaaat 36340577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 282 - 350
Target Start/End: Original strand, 18194211 - 18194279
Alignment:
Q  282 ttcctttttaattatcatttattgacattttacacaaatcaatacaatcaataaatattactacctttg 350  Q
    ||||||||||||| ||| || || | |||||||||||| ||| |||||||||||||  |||||| ||||    
T  18194211 ttcctttttaattgtcagtttttcaaattttacacaaaccaagacaatcaataaatgatactacttttg 18194279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 282 - 350
Target Start/End: Complemental strand, 24283825 - 24283757
Alignment:
Q  282 ttcctttttaattatcatttattgacattttacacaaatcaatacaatcaataaatattactacctttg 350  Q
    ||||||||||||| |||||| || || |||||||||||  || ||||| ||||||| ||||||| ||||    
T  24283825 ttcctttttaattgtcatttttttaccttttacacaaactaagacaattaataaatgttactacttttg 24283757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 286 - 350
Target Start/End: Original strand, 44820608 - 44820672
Alignment:
Q  286 tttttaattatcatttattgacattttacacaaatcaatacaatcaataaatattactacctttg 350  Q
    ||||||| | |||| | ||||||||||| ||||| ||| ||||||||||| ||||||||| ||||    
T  44820608 tttttaactgtcatattttgacattttatacaaaccaagacaatcaataattattactacttttg 44820672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 9e-18; HSPs: 40)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 78 - 152
Target Start/End: Complemental strand, 4775472 - 4775398
Alignment:
Q  78 atagtatagttgactgttccatgatttcaacaatattcatcattgtattccatgtatatatggctacacaaatgt 152  Q
    ||||||||||||||||||||||||||| | ||  |||||||||||||||  ||||||||||||| ||||||||||    
T  4775472 atagtatagttgactgttccatgattttagcataattcatcattgtattatatgtatatatggccacacaaatgt 4775398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 282 - 350
Target Start/End: Complemental strand, 10507057 - 10506989
Alignment:
Q  282 ttcctttttaattatcatttattgacattttacacaaatcaatacaatcaataaatattactacctttg 350  Q
    ||||||||||||| ||||||  ||| |||||||||||||||| ||||||||||||||||||||| ||||    
T  10507057 ttcctttttaattgtcattttgtgatattttacacaaatcaagacaatcaataaatattactacttttg 10506989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 282 - 350
Target Start/End: Complemental strand, 32348223 - 32348156
Alignment:
Q  282 ttcctttttaattatcatttattgacattttacacaaatcaatacaatcaataaatattactacctttg 350  Q
    ||||||||||||| ||| || ||||||||||||||||| ||||||||||||||||||||||||| ||||    
T  32348223 ttcctttttaattgtcactt-ttgacattttacacaaaccaatacaatcaataaatattactacttttg 32348156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 281 - 342
Target Start/End: Original strand, 30702280 - 30702341
Alignment:
Q  281 attcctttttaattatcatttattgacattttacacaaatcaatacaatcaataaatattac 342  Q
    |||||||||||||| ||| || ||||||||||||||||| ||||||||||||||||| ||||    
T  30702280 attcctttttaattgtcactttttgacattttacacaaaccaatacaatcaataaatgttac 30702341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 280 - 345
Target Start/End: Complemental strand, 42800354 - 42800289
Alignment:
Q  280 cattcctttttaattatcatttattgacattttacacaaatcaatacaatcaataaatattactac 345  Q
    ||||||||||||||| ||| || ||||||||||||||||| ||| ||||||||||||| |||||||    
T  42800354 cattcctttttaattgtcactttttgacattttacacaaaccaaaacaatcaataaatgttactac 42800289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 282 - 350
Target Start/End: Complemental strand, 5598291 - 5598223
Alignment:
Q  282 ttcctttttaattatcatttattgacattttacacaaatcaatacaatcaataaatattactacctttg 350  Q
    ||||||||||||| |||| | ||||||||||||||||| ||| ||||||||||| ||||||||| ||||    
T  5598291 ttcctttttaattgtcatattttgacattttacacaaaccaagacaatcaataattattactacttttg 5598223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 282 - 350
Target Start/End: Original strand, 35700366 - 35700434
Alignment:
Q  282 ttcctttttaattatcatttattgacattttacacaaatcaatacaatcaataaatattactacctttg 350  Q
    ||||||||||||| ||||||  ||| |||||||||||||||| ||||||||||||| ||||||| ||||    
T  35700366 ttcctttttaattgtcattttgtgatattttacacaaatcaagacaatcaataaatgttactacttttg 35700434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 282 - 350
Target Start/End: Complemental strand, 36850883 - 36850815
Alignment:
Q  282 ttcctttttaattatcatttattgacattttacacaaatcaatacaatcaataaatattactacctttg 350  Q
    ||||||||||||| |||||| |||| |||||||||||||||| ||| ||||||||| ||||||| ||||    
T  36850883 ttcctttttaattgtcattttttgatattttacacaaatcaagacagtcaataaatgttactacttttg 36850815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 282 - 341
Target Start/End: Complemental strand, 35605844 - 35605785
Alignment:
Q  282 ttcctttttaattatcatttattgacattttacacaaatcaatacaatcaataaatatta 341  Q
    ||||||||||||| ||| |  ||||||||||||||||| |||||||||||||||||||||    
T  35605844 ttcctttttaattgtcactatttgacattttacacaaaccaatacaatcaataaatatta 35605785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 282 - 337
Target Start/End: Original strand, 48174664 - 48174719
Alignment:
Q  282 ttcctttttaattatcatttattgacattttacacaaatcaatacaatcaataaat 337  Q
    ||||||||||||||||| || |||| |||||||||||||||| |||||||||||||    
T  48174664 ttcctttttaattatcactttttgatattttacacaaatcaagacaatcaataaat 48174719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 286 - 343
Target Start/End: Original strand, 1039067 - 1039124
Alignment:
Q  286 tttttaattatcatttattgacattttacacaaatcaatacaatcaataaatattact 343  Q
    ||||||||| ||| || || |||||||||||||||||| |||||||||||||||||||    
T  1039067 tttttaattgtcactttttaacattttacacaaatcaagacaatcaataaatattact 1039124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 286 - 343
Target Start/End: Original strand, 1045973 - 1046030
Alignment:
Q  286 tttttaattatcatttattgacattttacacaaatcaatacaatcaataaatattact 343  Q
    ||||||||| ||| || || |||||||||||||||||| |||||||||||||||||||    
T  1045973 tttttaattgtcactttttaacattttacacaaatcaagacaatcaataaatattact 1046030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 285 - 350
Target Start/End: Original strand, 32994463 - 32994528
Alignment:
Q  285 ctttttaattatcatttattgacattttacacaaatcaatacaatcaataaatattactacctttg 350  Q
    |||||||||| || ||| ||||||||||||||||| ||| ||||||||||| ||||||||| ||||    
T  32994463 ctttttaattgtctttttttgacattttacacaaaccaagacaatcaataattattactacttttg 32994528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 282 - 350
Target Start/End: Complemental strand, 9127915 - 9127847
Alignment:
Q  282 ttcctttttaattatcatttattgacattttacacaaatcaatacaatcaataaatattactacctttg 350  Q
    ||||||||||||| ||| || ||||||||||||||||| ||| ||| ||||||||| ||||||| ||||    
T  9127915 ttcctttttaattgtcactttttgacattttacacaaaccaagacattcaataaatgttactacttttg 9127847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 282 - 350
Target Start/End: Original strand, 31487770 - 31487838
Alignment:
Q  282 ttcctttttaattatcatttattgacattttacacaaatcaatacaatcaataaatattactacctttg 350  Q
    ||||||||||||| |||  | ||||||||||||||||| ||| |||||||||||||||| |||| ||||    
T  31487770 ttcctttttaattgtcacattttgacattttacacaaaccaagacaatcaataaatattgctacttttg 31487838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 282 - 350
Target Start/End: Complemental strand, 46096792 - 46096724
Alignment:
Q  282 ttcctttttaattatcatttattgacattttacacaaatcaatacaatcaataaatattactacctttg 350  Q
    |||||| |||||| ||| || |||| |||||| ||| ||||||||||||||||||||||||||| ||||    
T  46096792 ttccttcttaattgtcactttttgatattttatacacatcaatacaatcaataaatattactacttttg 46096724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 282 - 350
Target Start/End: Original strand, 51974162 - 51974230
Alignment:
Q  282 ttcctttttaattatcatttattgacattttacacaaatcaatacaatcaataaatattactacctttg 350  Q
    ||||||||||||| ||| || |||||||||||||| || ||| ||| ||||||||||||||||| ||||    
T  51974162 ttcctttttaattgtcactttttgacattttacacgaaccaaaacattcaataaatattactacttttg 51974230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 282 - 350
Target Start/End: Original strand, 52649720 - 52649788
Alignment:
Q  282 ttcctttttaattatcatttattgacattttacacaaatcaatacaatcaataaatattactacctttg 350  Q
    ||||||||||||| ||| || |||||||||| ||| |||||| ||||||||||||| ||||||| ||||    
T  52649720 ttcctttttaattgtcactttttgacatttttcactaatcaagacaatcaataaatgttactacttttg 52649788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 282 - 319
Target Start/End: Complemental strand, 1427925 - 1427888
Alignment:
Q  282 ttcctttttaattatcatttattgacattttacacaaa 319  Q
    |||||||||||||||||||| |||||||||||||||||    
T  1427925 ttcctttttaattatcattttttgacattttacacaaa 1427888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 282 - 335
Target Start/End: Complemental strand, 13508016 - 13507963
Alignment:
Q  282 ttcctttttaattatcatttattgacattttacacaaatcaatacaatcaataa 335  Q
    |||||||||||||||||  | ||||||||||||| ||||||| |||||||||||    
T  13508016 ttcctttttaattatcacattttgacattttacataaatcaagacaatcaataa 13507963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 282 - 335
Target Start/End: Complemental strand, 13515204 - 13515151
Alignment:
Q  282 ttcctttttaattatcatttattgacattttacacaaatcaatacaatcaataa 335  Q
    |||||||||||||||||  | ||||||||||||| ||||||| |||||||||||    
T  13515204 ttcctttttaattatcacattttgacattttacataaatcaagacaatcaataa 13515151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 282 - 335
Target Start/End: Original strand, 19929457 - 19929510
Alignment:
Q  282 ttcctttttaattatcatttattgacattttacacaaatcaatacaatcaataa 335  Q
    ||||||||||||| |||||| || |||||||||||||| ||| |||||||||||    
T  19929457 ttcctttttaattgtcattttttaacattttacacaaaccaagacaatcaataa 19929510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 282 - 335
Target Start/End: Original strand, 37437044 - 37437097
Alignment:
Q  282 ttcctttttaattatcatttattgacattttacacaaatcaatacaatcaataa 335  Q
    ||||||||||||| |||| | ||||||||||||||||| ||| |||||||||||    
T  37437044 ttcctttttaattgtcatattttgacattttacacaaaccaagacaatcaataa 37437097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 283 - 335
Target Start/End: Complemental strand, 1677443 - 1677391
Alignment:
Q  283 tcctttttaattatcatttattgacattttacacaaatcaatacaatcaataa 335  Q
    |||||||||||| |||  | ||||||||||||||||||||| |||||||||||    
T  1677443 tcctttttaattgtcacattttgacattttacacaaatcaagacaatcaataa 1677391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 278 - 350
Target Start/End: Original strand, 2059799 - 2059871
Alignment:
Q  278 tccattcctttttaattatcatttattgacattttacacaaatcaatacaatcaataaatattactacctttg 350  Q
    ||||||||||||||||| |||  | ||||||||||||||||| ||| | ||||||||| | ||||||| ||||    
T  2059799 tccattcctttttaattgtcacattttgacattttacacaaaccaaaataatcaataattgttactacatttg 2059871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 282 - 350
Target Start/End: Complemental strand, 12721686 - 12721618
Alignment:
Q  282 ttcctttttaattatcatttattgacattttacacaaatcaatacaatcaataaatattactacctttg 350  Q
    ||||||||||||| ||| || || |||||||||| ||| ||| ||||| ||||||||||||||| ||||    
T  12721686 ttcctttttaattgtcactttttaacattttacataaaccaagacaataaataaatattactacttttg 12721618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 286 - 342
Target Start/End: Complemental strand, 18344568 - 18344512
Alignment:
Q  286 tttttaattatcatttattgacattttacacaaatcaatacaatcaataaatattac 342  Q
    ||||||||| ||| || || |||||||||||||||||||| ||| ||||||||||||    
T  18344568 tttttaattgtcactttttaacattttacacaaatcaatataattaataaatattac 18344512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 282 - 350
Target Start/End: Original strand, 32168303 - 32168371
Alignment:
Q  282 ttcctttttaattatcatttattgacattttacacaaatcaatacaatcaataaatattactacctttg 350  Q
    ||||||||||||| ||| || |||| |||||||||||| ||| |||||||||||||  |||||| ||||    
T  32168303 ttcctttttaattgtcactttttgatattttacacaaaccaagacaatcaataaatggtactacttttg 32168371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 282 - 350
Target Start/End: Complemental strand, 36318598 - 36318530
Alignment:
Q  282 ttcctttttaattatcatttattgacattttacacaaatcaatacaatcaataaatattactacctttg 350  Q
    ||||||||||||| ||| || |||||| |||||||||| ||||||| ||||||||| | ||||| ||||    
T  36318598 ttcctttttaattgtcactttttgacaatttacacaaaccaatacattcaataaatgtcactacttttg 36318530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 269 - 332
Target Start/End: Original strand, 20605602 - 20605665
Alignment:
Q  269 aatacaacttccattcctttttaattatcatttattgacattttacacaaatcaatacaatcaa 332  Q
    ||||| || ||||||| ||||||||| |||| | ||||||||||||||||| ||| ||||||||    
T  20605602 aatactacctccattcatttttaattgtcatattttgacattttacacaaaccaagacaatcaa 20605665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 269 - 335
Target Start/End: Complemental strand, 29831012 - 29830946
Alignment:
Q  269 aatacaacttccattcctttttaattatcatttattgacattttacacaaatcaatacaatcaataa 335  Q
    ||||| || ||| ||||||||||||| |||  | ||||||||||||||||| ||| |||||||||||    
T  29831012 aatactacctccgttcctttttaattgtcacattttgacattttacacaaaccaagacaatcaataa 29830946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 282 - 332
Target Start/End: Original strand, 42787144 - 42787194
Alignment:
Q  282 ttcctttttaattatcatttattgacattttacacaaatcaatacaatcaa 332  Q
    ||||||||||||| |||||| ||||||||||||  ||||||| ||||||||    
T  42787144 ttcctttttaattgtcattttttgacattttacctaaatcaagacaatcaa 42787194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 283 - 344
Target Start/End: Complemental strand, 1038332 - 1038271
Alignment:
Q  283 tcctttttaattatcatttattgacattttacacaaatcaatacaatcaataaatattacta 344  Q
    |||||||||||| | |||| | || ||||||||| ||| || ||||||||||||||||||||    
T  1038332 tcctttttaattgttatttttagatattttacacgaataaagacaatcaataaatattacta 1038271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 283 - 344
Target Start/End: Complemental strand, 1045238 - 1045177
Alignment:
Q  283 tcctttttaattatcatttattgacattttacacaaatcaatacaatcaataaatattacta 344  Q
    |||||||||||| | |||| | || ||||||||| ||| || ||||||||||||||||||||    
T  1045238 tcctttttaattgttatttttagatattttacacgaataaagacaatcaataaatattacta 1045177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 343
Target Start/End: Complemental strand, 9362219 - 9362158
Alignment:
Q  282 ttcctttttaattatcatttattgacattttacacaaatcaatacaatcaataaatattact 343  Q
    ||||||||||| | ||| || ||||||||||| ||||||||| ||| ||||||||| |||||    
T  9362219 ttcctttttaactgtcactttttgacattttatacaaatcaagacactcaataaattttact 9362158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 282 - 350
Target Start/End: Original strand, 4100900 - 4100968
Alignment:
Q  282 ttcctttttaattatcatttattgacattttacacaaatcaatacaatcaataaatattactacctttg 350  Q
    ||||||||||||||| | || |||| ||||||||||||  || ||||||||||||| ||| ||| ||||    
T  4100900 ttcctttttaattattactttttgatattttacacaaactaagacaatcaataaatgttattacttttg 4100968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 306 - 350
Target Start/End: Complemental strand, 17013648 - 17013604
Alignment:
Q  306 acattttacacaaatcaatacaatcaataaatattactacctttg 350  Q
    |||||||||||||| ||||||| ||||||||| ||||||| ||||    
T  17013648 acattttacacaaaccaatacattcaataaatgttactacttttg 17013604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 282 - 350
Target Start/End: Original strand, 37735130 - 37735198
Alignment:
Q  282 ttcctttttaattatcatttattgacattttacacaaatcaatacaatcaataaatattactacctttg 350  Q
    ||||||||||||||||| || || | ||||||| |||| ||| |||||||||||||  |||||| ||||    
T  37735130 ttcctttttaattatcactttttcaaattttacgcaaaccaagacaatcaataaatgatactacttttg 37735198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 286 - 350
Target Start/End: Original strand, 40926748 - 40926812
Alignment:
Q  286 tttttaattatcatttattgacattttacacaaatcaatacaatcaataaatattactacctttg 350  Q
    ||||||||| |||  | ||||||||||||| ||| ||||||||||||||| | ||||||| ||||    
T  40926748 tttttaattgtcacattttgacattttacataaaccaatacaatcaataattgttactacttttg 40926812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 282 - 350
Target Start/End: Complemental strand, 51613657 - 51613589
Alignment:
Q  282 ttcctttttaattatcatttattgacattttacacaaatcaatacaatcaataaatattactacctttg 350  Q
    ||||||||||||| ||| || || | |||||||||||| ||| |||||||||||||  |||||| ||||    
T  51613657 ttcctttttaattgtcacttttttatattttacacaaaccaagacaatcaataaatgatactacttttg 51613589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 4e-17; HSPs: 29)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 277 - 350
Target Start/End: Original strand, 29091074 - 29091147
Alignment:
Q  277 ttccattcctttttaattatcatttattgacattttacacaaatcaatacaatcaataaatattactacctttg 350  Q
    |||| ||| ||||||||| ||| || ||||||||||||||||||||| ||||||||||||||||||||| ||||    
T  29091074 ttccgttcttttttaattgtcactttttgacattttacacaaatcaagacaatcaataaatattactacttttg 29091147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 282 - 350
Target Start/End: Complemental strand, 23855803 - 23855735
Alignment:
Q  282 ttcctttttaattatcatttattgacattttacacaaatcaatacaatcaataaatattactacctttg 350  Q
    ||||||||||||  |||||| ||||||||||||| ||| ||||||||||||||||||||||||| ||||    
T  23855803 ttcctttttaatcgtcattttttgacattttacataaaccaatacaatcaataaatattactacttttg 23855735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 269 - 350
Target Start/End: Original strand, 14061130 - 14061211
Alignment:
Q  269 aatacaacttccattcctttttaattatcatttattgacattttacacaaatcaatacaatcaataaatattactacctttg 350  Q
    ||||| || ||| ||||||||||||| ||| || || |||||||||||||| ||| ||||||||||||||||||||| ||||    
T  14061130 aatactacctccgttcctttttaattgtcactttttaacattttacacaaaccaagacaatcaataaatattactacttttg 14061211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 284 - 350
Target Start/End: Original strand, 27911668 - 27911734
Alignment:
Q  284 cctttttaattatcatttattgacattttacacaaatcaatacaatcaataaatattactacctttg 350  Q
    ||||||||| | | |||| ||||||||||||||||||||| ||||||||||||| ||||||| ||||    
T  27911668 cctttttaagtgttattttttgacattttacacaaatcaagacaatcaataaatgttactacttttg 27911734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 284 - 350
Target Start/End: Original strand, 27958087 - 27958153
Alignment:
Q  284 cctttttaattatcatttattgacattttacacaaatcaatacaatcaataaatattactacctttg 350  Q
    ||||||||| | | |||| ||||||||||||||||||||| ||||||||||||| ||||||| ||||    
T  27958087 cctttttaagtgttattttttgacattttacacaaatcaagacaatcaataaatgttactacttttg 27958153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 282 - 350
Target Start/End: Complemental strand, 1245558 - 1245490
Alignment:
Q  282 ttcctttttaattatcatttattgacattttacacaaatcaatacaatcaataaatattactacctttg 350  Q
    ||||||||||||| ||| || ||||||||||||| ||||||| ||||||||||| | ||||||| ||||    
T  1245558 ttcctttttaattgtcactttttgacattttacataaatcaagacaatcaataattgttactacttttg 1245490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 282 - 350
Target Start/End: Complemental strand, 18842775 - 18842707
Alignment:
Q  282 ttcctttttaattatcatttattgacattttacacaaatcaatacaatcaataaatattactacctttg 350  Q
    ||||||||||||| |||  | ||||||||||||||||||||| | ||||||||||| ||||||| ||||    
T  18842775 ttcctttttaattgtcacattttgacattttacacaaatcaagataatcaataaatgttactacttttg 18842707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 282 - 350
Target Start/End: Original strand, 26740131 - 26740199
Alignment:
Q  282 ttcctttttaattatcatttattgacattttacacaaatcaatacaatcaataaatattactacctttg 350  Q
    ||||||||||||| ||| || ||||||||||||||||| ||| ||||||||||| | ||||||| ||||    
T  26740131 ttcctttttaattgtcactttttgacattttacacaaaccaagacaatcaataagtgttactacttttg 26740199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 282 - 350
Target Start/End: Complemental strand, 35029792 - 35029724
Alignment:
Q  282 ttcctttttaattatcatttattgacattttacacaaatcaatacaatcaataaatattactacctttg 350  Q
    ||||||||||||| |||||| || |||||||| ||||||||||| |||| |||||||| ||||| ||||    
T  35029792 ttcctttttaattgtcattttttaacattttatacaaatcaatataatccataaatatcactacttttg 35029724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 282 - 337
Target Start/End: Complemental strand, 1739939 - 1739884
Alignment:
Q  282 ttcctttttaattatcatttattgacattttacacaaatcaatacaatcaataaat 337  Q
    ||||||||||||| ||| || ||||||||||||| ||||||| |||||||||||||    
T  1739939 ttcctttttaattgtcactttttgacattttacataaatcaacacaatcaataaat 1739884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 275 - 337
Target Start/End: Complemental strand, 8672747 - 8672685
Alignment:
Q  275 acttccattcctttttaattatcatttattgacattttacacaaatcaatacaatcaataaat 337  Q
    |||||| ||||||||||||| |||||| |||| |||||||||||| ||| | |||||||||||    
T  8672747 acttccgttcctttttaattgtcattttttgatattttacacaaaccaaaataatcaataaat 8672685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 282 - 344
Target Start/End: Complemental strand, 31964815 - 31964753
Alignment:
Q  282 ttcctttttaattatcatttattgacattttacacaaatcaatacaatcaataaatattacta 344  Q
    ||||| ||||||| ||||||  |||||||||||||||| ||| ||||||||||||| ||||||    
T  31964815 ttcctctttaattgtcattttatgacattttacacaaaccaagacaatcaataaatgttacta 31964753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 305 - 347
Target Start/End: Complemental strand, 35052345 - 35052303
Alignment:
Q  305 gacattttacacaaatcaatacaatcaataaatattactacct 347  Q
    ||||||||||||||||||||||| ||||||||| |||||||||    
T  35052345 gacattttacacaaatcaatacattcaataaatgttactacct 35052303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 282 - 350
Target Start/End: Original strand, 167471 - 167540
Alignment:
Q  282 ttcctttttaattatca-tttattgacattttacacaaatcaatacaatcaataaatattactacctttg 350  Q
    ||||||||||||| ||| ||| || |||||| ||||||| ||||| ||||||||||||||||||| ||||    
T  167471 ttcctttttaattgtcacttttttaacatttcacacaaaccaatataatcaataaatattactacttttg 167540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 282 - 350
Target Start/End: Original strand, 8554010 - 8554078
Alignment:
Q  282 ttcctttttaattatcatttattgacattttacacaaatcaatacaatcaataaatattactacctttg 350  Q
    |||||||| |||| |||  | ||||||||||||||||||||| ||||||||||||| || |||| ||||    
T  8554010 ttccttttcaattgtcacattttgacattttacacaaatcaagacaatcaataaatgttgctacttttg 8554078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 282 - 350
Target Start/End: Original strand, 12248764 - 12248832
Alignment:
Q  282 ttcctttttaattatcatttattgacattttacacaaatcaatacaatcaataaatattactacctttg 350  Q
    |||||||||||||  || || |||||||||||||| || ||| ||| ||||||||||||||||| ||||    
T  12248764 ttcctttttaattgacagtttttgacattttacacgaaccaagacattcaataaatattactacttttg 12248832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 282 - 350
Target Start/End: Original strand, 17074576 - 17074644
Alignment:
Q  282 ttcctttttaattatcatttattgacattttacacaaatcaatacaatcaataaatattactacctttg 350  Q
    ||||||||||||| |||  | || |||||||||||||| ||| |||||||||||||||| |||| ||||    
T  17074576 ttcctttttaattgtcacattttaacattttacacaaaccaagacaatcaataaatattgctacttttg 17074644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 282 - 350
Target Start/End: Complemental strand, 17573694 - 17573626
Alignment:
Q  282 ttcctttttaattatcatttattgacattttacacaaatcaatacaatcaataaatattactacctttg 350  Q
    ||||||||||||| |||  | || |||||||||||||| ||| |||||||||||||||| |||| ||||    
T  17573694 ttcctttttaattgtcacattttaacattttacacaaaccaagacaatcaataaatattgctacttttg 17573626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 282 - 338
Target Start/End: Original strand, 23793265 - 23793321
Alignment:
Q  282 ttcctttttaattatcatttattgacattttacacaaatcaatacaatcaataaata 338  Q
    ||||||||||||| |||||| || |||||||||||||| ||| ||||| ||||||||    
T  23793265 ttcctttttaattgtcattttttaacattttacacaaaccaagacaattaataaata 23793321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 286 - 350
Target Start/End: Original strand, 41643488 - 41643552
Alignment:
Q  286 tttttaattatcatttattgacattttacacaaatcaatacaatcaataaatattactacctttg 350  Q
    ||||||||| | |||| ||||||||||||||||| ||||| | ||||||||| ||||||| ||||    
T  41643488 tttttaattgtaattttttgacattttacacaaaccaataaagtcaataaatgttactacttttg 41643552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 282 - 350
Target Start/End: Original strand, 43641983 - 43642051
Alignment:
Q  282 ttcctttttaattatcatttattgacattttacacaaatcaatacaatcaataaatattactacctttg 350  Q
    ||||||||||||| ||| || |||||||||||||||||  || ||||||||||| | ||||||| ||||    
T  43641983 ttcctttttaattgtcactttttgacattttacacaaactaagacaatcaataattgttactacttttg 43642051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 268 - 343
Target Start/End: Complemental strand, 6757666 - 6757591
Alignment:
Q  268 taatacaacttccattcctttttaattatcatttattgacattttacacaaatcaatacaatcaataaatattact 343  Q
    |||||| || ||| ||||||||| | | ||| || ||||||||||||||||||||| ||| ||||||||| |||||    
T  6757666 taatactacctccgttccttttttactgtcactttttgacattttacacaaatcaagacactcaataaatgttact 6757591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 278 - 332
Target Start/End: Complemental strand, 26062957 - 26062903
Alignment:
Q  278 tccattcctttttaattatcatttattgacattttacacaaatcaatacaatcaa 332  Q
    ||||||||||||||||| |||  | ||||||||||||||||||||| | ||||||    
T  26062957 tccattcctttttaattgtcacattttgacattttacacaaatcaagataatcaa 26062903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 269 - 350
Target Start/End: Original strand, 2888449 - 2888530
Alignment:
Q  269 aatacaacttccattcctttttaattatcatttattgacattttacacaaatcaatacaatcaataaatattactacctttg 350  Q
    ||||| || ||| ||||||||||||| |||  | || |||||||||||||| ||| ||||||||||||| || |||| ||||    
T  2888449 aatactacctccgttcctttttaattgtcacattttaacattttacacaaaccaagacaatcaataaatgttgctacttttg 2888530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 335
Target Start/End: Original strand, 7605894 - 7605946
Alignment:
Q  282 ttcctttttaattatcatttattgacattttacacaaatcaatacaatcaataa 335  Q
    ||||||||||||| | |||| || |||||||||||||||||| |||||||||||    
T  7605894 ttcctttttaattgttattt-ttaacattttacacaaatcaagacaatcaataa 7605946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 350
Target Start/End: Original strand, 11707451 - 11707516
Alignment:
Q  285 ctttttaattatcatttattgacattttacacaaatcaatacaatcaataaatattactacctttg 350  Q
    |||||||||| |||| | || |||||||||| |||| || ||||||||||| ||||||||| ||||    
T  11707451 ctttttaattgtcatatttttacattttacataaattaagacaatcaataattattactacttttg 11707516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 343
Target Start/End: Complemental strand, 13174175 - 13174114
Alignment:
Q  282 ttcctttttaattatcatttattgacattttacacaaatcaatacaatcaataaatattact 343  Q
    ||||||||||| | ||| || ||||||||||||||||| ||| ||| ||||||||| |||||    
T  13174175 ttcctttttaactgtcactttttgacattttacacaaaccaagacactcaataaatgttact 13174114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 335
Target Start/End: Original strand, 33935054 - 33935107
Alignment:
Q  282 ttcctttttaattatcatttattgacattttacacaaatcaatacaatcaataa 335  Q
    ||||||||||||| |||  | ||||||||||||||||| ||| |||||||||||    
T  33935054 ttcctttttaattgtcacattttgacattttacacaaaccaagacaatcaataa 33935107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 343
Target Start/End: Original strand, 41701476 - 41701537
Alignment:
Q  282 ttcctttttaattatcatttattgacattttacacaaatcaatacaatcaataaatattact 343  Q
    ||||||||||| | ||| || || | |||||||||||||||| ||| |||||||||||||||    
T  41701476 ttcctttttaactgtcactttttaatattttacacaaatcaagacactcaataaatattact 41701537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0343 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0343
Description:

Target: scaffold0343; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 282 - 350
Target Start/End: Complemental strand, 7670 - 7602
Alignment:
Q  282 ttcctttttaattatcatttattgacattttacacaaatcaatacaatcaataaatattactacctttg 350  Q
    ||||||||||||| ||| || |||| |||||||||||||||| ||||||||||||||||||||| ||||    
T  7670 ttcctttttaattgtcactttttgatattttacacaaatcaagacaatcaataaatattactacttttg 7602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 36)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 282 - 350
Target Start/End: Original strand, 12722950 - 12723018
Alignment:
Q  282 ttcctttttaattatcatttattgacattttacacaaatcaatacaatcaataaatattactacctttg 350  Q
    ||||||||||||| ||| || ||||||||||||||||| ||| ||||||||||||||||||||| ||||    
T  12722950 ttcctttttaattctcactttttgacattttacacaaaccaagacaatcaataaatattactacttttg 12723018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 282 - 344
Target Start/End: Complemental strand, 13703325 - 13703263
Alignment:
Q  282 ttcctttttaattatcatttattgacattttacacaaatcaatacaatcaataaatattacta 344  Q
    ||||||||||||| ||| || |||| |||||||||||||||| ||||||||||||||||||||    
T  13703325 ttcctttttaattgtcactttttgatattttacacaaatcaagacaatcaataaatattacta 13703263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 282 - 350
Target Start/End: Original strand, 5842984 - 5843052
Alignment:
Q  282 ttcctttttaattatcatttattgacattttacacaaatcaatacaatcaataaatattactacctttg 350  Q
    ||||||||||||||||| || ||||||||||||| ||| ||| ||||||||||||| ||||||| ||||    
T  5842984 ttcctttttaattatcactttttgacattttacataaaccaagacaatcaataaatgttactacttttg 5843052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 282 - 350
Target Start/End: Original strand, 12784434 - 12784502
Alignment:
Q  282 ttcctttttaattatcatttattgacattttacacaaatcaatacaatcaataaatattactacctttg 350  Q
    ||||||||||||| ||| || ||||||||||||||||| ||| ||||||||||||| ||||||| ||||    
T  12784434 ttcctttttaattctcactttttgacattttacacaaaccaagacaatcaataaatgttactacttttg 12784502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 269 - 335
Target Start/End: Complemental strand, 4017655 - 4017589
Alignment:
Q  269 aatacaacttccattcctttttaattatcatttattgacattttacacaaatcaatacaatcaataa 335  Q
    ||||| || ||||||||||||||||| ||| || ||||||||||||||||||||| | |||||||||    
T  4017655 aatactacatccattcctttttaattgtcactttttgacattttacacaaatcaagataatcaataa 4017589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 284 - 350
Target Start/End: Original strand, 12637940 - 12638006
Alignment:
Q  284 cctttttaattatcatttattgacattttacacaaatcaatacaatcaataaatattactacctttg 350  Q
    ||||||||||| ||| || || |||||||||| ||||||| ||||||||||||||||||||| ||||    
T  12637940 cctttttaattgtcactttttaacattttacataaatcaagacaatcaataaatattactacttttg 12638006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 268 - 342
Target Start/End: Original strand, 18437300 - 18437374
Alignment:
Q  268 taatacaacttccattcctttttaattatcatttattgacattttacacaaatcaatacaatcaataaatattac 342  Q
    |||||| || ||| ||||||||||||| ||| || |||| |||||||||||| ||||||||||||||||| ||||    
T  18437300 taatactacctccgttcctttttaattgtcactttttgatattttacacaaaccaatacaatcaataaatgttac 18437374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 282 - 343
Target Start/End: Complemental strand, 13461238 - 13461177
Alignment:
Q  282 ttcctttttaattatcatttattgacattttacacaaatcaatacaatcaataaatattact 343  Q
    ||||||||||||| ||| || ||||||||||||||||| ||||||| ||||||||| |||||    
T  13461238 ttcctttttaattgtcactttttgacattttacacaaaccaatacactcaataaatgttact 13461177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 269 - 350
Target Start/End: Complemental strand, 31803565 - 31803484
Alignment:
Q  269 aatacaacttccattcctttttaattatcatttattgacattttacacaaatcaatacaatcaataaatattactacctttg 350  Q
    ||||| || ||| ||| ||||||||| ||| || ||||||||||||||||||||| ||||| ||||||| ||||||| ||||    
T  31803565 aatactacctccgttcttttttaattgtcactttttgacattttacacaaatcaagacaattaataaatgttactacttttg 31803484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 282 - 350
Target Start/End: Complemental strand, 7408559 - 7408491
Alignment:
Q  282 ttcctttttaattatcatttattgacattttacacaaatcaatacaatcaataaatattactacctttg 350  Q
    ||||||||||||| |||| | ||||||||||||||||| ||| |||||||||||| |||| ||| ||||    
T  7408559 ttcctttttaattgtcatcttttgacattttacacaaaccaaaacaatcaataaacattaatacttttg 7408491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 286 - 350
Target Start/End: Original strand, 9958878 - 9958942
Alignment:
Q  286 tttttaattatcatttattgacattttacacaaatcaatacaatcaataaatattactacctttg 350  Q
    ||||||||| |||||| |||||| |||||||||||||||||| ||||||||| | ||||| ||||    
T  9958878 tttttaattgtcattttttgacaatttacacaaatcaatacattcaataaatgtcactacttttg 9958942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 282 - 350
Target Start/End: Original strand, 28024250 - 28024318
Alignment:
Q  282 ttcctttttaattatcatttattgacattttacacaaatcaatacaatcaataaatattactacctttg 350  Q
    ||||||||||||| |||| | |||||||||||||| || ||| ||||||||||| ||||||||| ||||    
T  28024250 ttcctttttaattgtcatattttgacattttacaccaaccaagacaatcaataattattactacttttg 28024318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 286 - 344
Target Start/End: Complemental strand, 3244020 - 3243962
Alignment:
Q  286 tttttaattatcatttattgacattttacacaaatcaatacaatcaataaatattacta 344  Q
    ||||||||| |||||| ||||||||||||| ||||||| ||||| ||||||| ||||||    
T  3244020 tttttaattgtcattttttgacattttacataaatcaagacaattaataaatgttacta 3243962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 269 - 347
Target Start/End: Original strand, 7734762 - 7734840
Alignment:
Q  269 aatacaacttccattcctttttaattatcatttattgacattttacacaaatcaatacaatcaataaatattactacct 347  Q
    ||||| || ||| ||||||||||||| |||||| || | |||||||| ||||||| |||||||||||||  ||||||||    
T  7734762 aatactacatccgttcctttttaattgtcattttttcaaattttacataaatcaagacaatcaataaatgatactacct 7734840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 282 - 332
Target Start/End: Complemental strand, 8825285 - 8825235
Alignment:
Q  282 ttcctttttaattatcatttattgacattttacacaaatcaatacaatcaa 332  Q
    |||||||||||||||||  | ||||||||||||||||||||| ||||||||    
T  8825285 ttcctttttaattatcacattttgacattttacacaaatcaagacaatcaa 8825235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 282 - 344
Target Start/End: Original strand, 14793781 - 14793843
Alignment:
Q  282 ttcctttttaattatcatttattgacattttacacaaatcaatacaatcaataaatattacta 344  Q
    ||||||||||||| |||  | ||||||||||||||||| ||||| ||||||||| ||||||||    
T  14793781 ttcctttttaattgtcacattttgacattttacacaaaccaatataatcaataattattacta 14793843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 304 - 350
Target Start/End: Complemental strand, 23418752 - 23418706
Alignment:
Q  304 tgacattttacacaaatcaatacaatcaataaatattactacctttg 350  Q
    |||||||||||||||||||| ||||||||||||| ||| ||||||||    
T  23418752 tgacattttacacaaatcaagacaatcaataaatgttattacctttg 23418706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 282 - 343
Target Start/End: Complemental strand, 425351 - 425291
Alignment:
Q  282 ttcctttttaattatcatttattgacattttacacaaatcaatacaatcaataaatattact 343  Q
    ||||||||||| | |||||| ||||||||||||||||||||| ||| ||||||||| |||||    
T  425351 ttcctttttaactgtcattt-ttgacattttacacaaatcaagacactcaataaatgttact 425291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 282 - 350
Target Start/End: Complemental strand, 6008113 - 6008044
Alignment:
Q  282 ttcctttttaattatca-tttattgacattttacacaaatcaatacaatcaataaatattactacctttg 350  Q
    ||||||||||||| ||| ||| |||| |||||||||||| ||||||||||||||| | ||||||| ||||    
T  6008113 ttcctttttaattgtcacttttttgatattttacacaaaccaatacaatcaataattgttactacttttg 6008044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 281 - 350
Target Start/End: Complemental strand, 6331050 - 6330981
Alignment:
Q  281 attcctttttaattatcatttattgacattttacacaaatcaatacaatcaataaatattactacctttg 350  Q
    |||||||||||||||||  || ||||||||||||| |||   | ||||||||||||||||||||| ||||    
T  6331050 attcctttttaattatctctttttgacattttacataaacttagacaatcaataaatattactacttttg 6330981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 284 - 344
Target Start/End: Original strand, 2133901 - 2133960
Alignment:
Q  284 cctttttaattatcatttattgacattttacacaaatcaatacaatcaataaatattacta 344  Q
    |||||||||||||||||| ||||||||||||| ||| ||| ||||||||||| | ||||||    
T  2133901 cctttttaattatcattt-ttgacattttacataaaccaagacaatcaataattgttacta 2133960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 275 - 335
Target Start/End: Original strand, 6754163 - 6754223
Alignment:
Q  275 acttccattcctttttaattatcatttattgacattttacacaaatcaatacaatcaataa 335  Q
    |||||| ||||||||||||| |||  | ||||||||||||||||| ||| |||||||||||    
T  6754163 acttccgttcctttttaattgtcacattttgacattttacacaaaccaagacaatcaataa 6754223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 282 - 350
Target Start/End: Complemental strand, 26906718 - 26906650
Alignment:
Q  282 ttcctttttaattatcatttattgacattttacacaaatcaatacaatcaataaatattactacctttg 350  Q
    ||||||||||||| ||| || |||| |||||||||||| ||| ||| ||||||||| ||||||| ||||    
T  26906718 ttcctttttaattgtcactttttgatattttacacaaaccaaaacattcaataaatcttactacttttg 26906650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 285 - 337
Target Start/End: Original strand, 31985044 - 31985096
Alignment:
Q  285 ctttttaattatcatttattgacattttacacaaatcaatacaatcaataaat 337  Q
    |||| ||||||||| || ||||||||||||| ||||||| |||||||||||||    
T  31985044 ctttctaattatcactttttgacattttacataaatcaagacaatcaataaat 31985096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 283 - 350
Target Start/End: Complemental strand, 37633903 - 37633836
Alignment:
Q  283 tcctttttaattatcatttattgacattttacacaaatcaatacaatcaataaatattactacctttg 350  Q
    |||||||||||| ||| || |||| |||||||||||| ||| ||||| ||||||| ||||||| ||||    
T  37633903 tcctttttaattgtcactttttgatattttacacaaaccaagacaattaataaatgttactacttttg 37633836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 283 - 350
Target Start/End: Complemental strand, 37809986 - 37809919
Alignment:
Q  283 tcctttttaattatcatttattgacattttacacaaatcaatacaatcaataaatattactacctttg 350  Q
    |||||||||||| ||| || |||| |||||||||||| ||| ||||| ||||||| ||||||| ||||    
T  37809986 tcctttttaattgtcactttttgatattttacacaaaccaagacaattaataaatgttactacttttg 37809919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 285 - 335
Target Start/End: Complemental strand, 3893036 - 3892986
Alignment:
Q  285 ctttttaattatcatttattgacattttacacaaatcaatacaatcaataa 335  Q
    |||||||||| | |||| |||||||||||||||||||||  ||||||||||    
T  3893036 ctttttaattgttattttttgacattttacacaaatcaagtcaatcaataa 3892986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 282 - 344
Target Start/End: Complemental strand, 6689827 - 6689765
Alignment:
Q  282 ttcctttttaattatcatttattgacattttacacaaatcaatacaatcaataaatattacta 344  Q
    ||||||||||||| | |||| || |||||||||||||||||| ||||| ||||| | ||||||    
T  6689827 ttcctttttaattgttatttttttacattttacacaaatcaaaacaattaataattgttacta 6689765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 335
Target Start/End: Complemental strand, 5119406 - 5119353
Alignment:
Q  282 ttcctttttaattatcatttattgacattttacacaaatcaatacaatcaataa 335  Q
    ||||||||||||| |||||| || | |||||| |||||| ||||||||||||||    
T  5119406 ttcctttttaattgtcattttttaatattttatacaaattaatacaatcaataa 5119353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 350
Target Start/End: Original strand, 37306693 - 37306758
Alignment:
Q  285 ctttttaattatcatttattgacattttacacaaatcaatacaatcaataaatattactacctttg 350  Q
    |||||||||| ||| || || |||||||||||||| ||| ||||| ||||||| ||||||| ||||    
T  37306693 ctttttaattgtcactttttaacattttacacaaaccaagacaattaataaatgttactacttttg 37306758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 335
Target Start/End: Original strand, 38297516 - 38297569
Alignment:
Q  282 ttcctttttaattatcatttattgacattttacacaaatcaatacaatcaataa 335  Q
    ||||||||||||| ||| || || |||||||||||||| ||| |||||||||||    
T  38297516 ttcctttttaattgtcactttttaacattttacacaaaacaagacaatcaataa 38297569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 303 - 343
Target Start/End: Original strand, 1795129 - 1795169
Alignment:
Q  303 ttgacattttacacaaatcaatacaatcaataaatattact 343  Q
    ||||||||||||||||||||| ||| ||||||||| |||||    
T  1795129 ttgacattttacacaaatcaagacactcaataaatgttact 1795169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 268 - 332
Target Start/End: Complemental strand, 18795025 - 18794961
Alignment:
Q  268 taatacaacttccattcctttttaattatcatttattgacattttacacaaatcaatacaatcaa 332  Q
    |||||| || ||| ||||||||||||| |||    ||||||||||||||||||||| ||||||||    
T  18795025 taatactacctccgttcctttttaattttcacactttgacattttacacaaatcaagacaatcaa 18794961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 286 - 350
Target Start/End: Original strand, 24074833 - 24074897
Alignment:
Q  286 tttttaattatcatttattgacattttacacaaatcaatacaatcaataaatattactacctttg 350  Q
    ||||||||| |||  | ||||||||||||||||| ||| ||||||||||| | ||||||| ||||    
T  24074833 tttttaattgtcacattttgacattttacacaaaccaaaacaatcaataattgttactacttttg 24074897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 282 - 350
Target Start/End: Original strand, 39893800 - 39893868
Alignment:
Q  282 ttcctttttaattatcatttattgacattttacacaaatcaatacaatcaataaatattactacctttg 350  Q
    ||||||||||||| ||| || || |||||||||||||| ||| | ||||||||| | ||||||| ||||    
T  39893800 ttcctttttaattgtcactttttaacattttacacaaaccaaaataatcaataagtgttactacttttg 39893868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 282 - 350
Target Start/End: Complemental strand, 42911778 - 42911710
Alignment:
Q  282 ttcctttttaattatcatttattgacattttacacaaatcaatacaatcaataaatattactacctttg 350  Q
    ||||||||||||| |||  | |||| |||||||||||| ||| ||||||||||| | ||||||| ||||    
T  42911778 ttcctttttaattgtcacattttgatattttacacaaaccaagacaatcaataattgttactacttttg 42911710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 282 - 350
Target Start/End: Complemental strand, 54231788 - 54231720
Alignment:
Q  282 ttcctttttaattatcatttattgacattttacacaaatcaatacaatcaataaatattactacctttg 350  Q
    ||||||||||||| |||||| ||||||||||||||||||||| ||||||||||| | ||||||| ||||    
T  54231788 ttcctttttaattgtcattttttgacattttacacaaatcaagacaatcaataattgttactacttttg 54231720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 277 - 350
Target Start/End: Original strand, 47596603 - 47596676
Alignment:
Q  277 ttccattcctttttaattatcatttattgacattttacacaaatcaatacaatcaataaatattactacctttg 350  Q
    |||| ||||||||||||| |||||| ||||||||||||||||| ||||| | ||||||||| ||||||| ||||    
T  47596603 ttccgttcctttttaattgtcattttttgacattttacacaaaccaataaagtcaataaatgttactacttttg 47596676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 282 - 350
Target Start/End: Complemental strand, 33809336 - 33809268
Alignment:
Q  282 ttcctttttaattatcatttattgacattttacacaaatcaatacaatcaataaatattactacctttg 350  Q
    ||||||||||||| ||| || || |||||||||||||||||| ||||||||||||| ||||||| ||||    
T  33809336 ttcctttttaattgtcactttttaacattttacacaaatcaaaacaatcaataaatgttactacttttg 33809268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 285 - 344
Target Start/End: Original strand, 18135048 - 18135107
Alignment:
Q  285 ctttttaattatcatttattgacattttacacaaatcaatacaatcaataaatattacta 344  Q
    |||||||||| |||| | ||||||||||||||||| ||| ||||||||||||||||||||    
T  18135048 ctttttaattgtcatattttgacattttacacaaaccaaaacaatcaataaatattacta 18135107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 268 - 335
Target Start/End: Original strand, 36659408 - 36659475
Alignment:
Q  268 taatacaacttccattcctttttaattatcatttattgacattttacacaaatcaatacaatcaataa 335  Q
    |||||| || ||| |||||| |||||| |||||| ||||||||||||||||||||| |||||||||||    
T  36659408 taatactacctccgttccttcttaattgtcattttttgacattttacacaaatcaagacaatcaataa 36659475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 267 - 350
Target Start/End: Complemental strand, 42629581 - 42629498
Alignment:
Q  267 gtaatacaacttccattcctttttaattatcatttattgacattttacacaaatcaatacaatcaataaatattactacctttg 350  Q
    ||||||| || ||| ||| ||||||||| |||||| |||| |||||||||||| ||| ||||||||||||| ||||||| ||||    
T  42629581 gtaatactacatccgttcgtttttaattgtcattttttgatattttacacaaaccaagacaatcaataaatgttactacttttg 42629498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 285 - 344
Target Start/End: Original strand, 49122258 - 49122317
Alignment:
Q  285 ctttttaattatcatttattgacattttacacaaatcaatacaatcaataaatattacta 344  Q
    |||||||||| |||| | ||||||||||||||||| ||| ||||||||||||||||||||    
T  49122258 ctttttaattgtcatattttgacattttacacaaaccaaaacaatcaataaatattacta 49122317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 281 - 350
Target Start/End: Complemental strand, 20087420 - 20087352
Alignment:
Q  281 attcctttttaattatcatttattgacattttacacaaatcaatacaatcaataaatattactacctttg 350  Q
    ||||||||||||||||||||| |||||||||||  |||||||| || |||||||||| ||||||| ||||    
T  20087420 attcctttttaattatcattt-ttgacattttaggcaaatcaaaactatcaataaatgttactacttttg 20087352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 282 - 350
Target Start/End: Original strand, 53467546 - 53467615
Alignment:
Q  282 ttcctttttaattatcatttatt-gacattttacacaaatcaatacaatcaataaatattactacctttg 350  Q
    ||||||||||||| |||||| || |||||||||||||||||||   ||||||||||||||||||| ||||    
T  53467546 ttcctttttaattgtcatttttttgacattttacacaaatcaaatgaatcaataaatattactacttttg 53467615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 278 - 350
Target Start/End: Original strand, 31984143 - 31984215
Alignment:
Q  278 tccattcctttttaattatcatttattgacattttacacaaatcaatacaatcaataaatattactacctttg 350  Q
    |||||| |||||||||| ||| || ||||||||||||||||| ||| ||||||||||| | ||||||| ||||    
T  31984143 tccatttctttttaattgtcactttttgacattttacacaaaccaacacaatcaataattgttactacttttg 31984215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 282 - 350
Target Start/End: Complemental strand, 45725785 - 45725717
Alignment:
Q  282 ttcctttttaattatcatttattgacattttacacaaatcaatacaatcaataaatattactacctttg 350  Q
    ||||||||||||| |||||| |||||||||||||||||  |||| | ||||||||| ||||||| ||||    
T  45725785 ttcctttttaattgtcattttttgacattttacacaaacaaataaagtcaataaatgttactacttttg 45725717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 282 - 350
Target Start/End: Complemental strand, 52061807 - 52061739
Alignment:
Q  282 ttcctttttaattatcatttattgacattttacacaaatcaatacaatcaataaatattactacctttg 350  Q
    ||||||||||||| |||| | ||||||||||||||||||||| ||||||||| | | ||||||| ||||    
T  52061807 ttcctttttaattgtcatattttgacattttacacaaatcaagacaatcaatcattgttactacttttg 52061739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 303 - 350
Target Start/End: Original strand, 52057467 - 52057514
Alignment:
Q  303 ttgacattttacacaaatcaatacaatcaataaatattactacctttg 350  Q
    ||||||||||||||||| |||| |||||||||||||||||||| ||||    
T  52057467 ttgacattttacacaaaccaatccaatcaataaatattactacttttg 52057514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 278 - 335
Target Start/End: Original strand, 52677157 - 52677214
Alignment:
Q  278 tccattcctttttaattatcatttattgacattttacacaaatcaatacaatcaataa 335  Q
    ||||||||||||||||| |||  | ||||||||||||||||| ||| |||||||||||    
T  52677157 tccattcctttttaattgtcacattttgacattttacacaaaccaaaacaatcaataa 52677214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 282 - 350
Target Start/End: Original strand, 23719779 - 23719847
Alignment:
Q  282 ttcctttttaattatcatttattgacattttacacaaatcaatacaatcaataaatattactacctttg 350  Q
    ||||||||||||| | |||| ||||||||||||| |||  || ||| ||||||||||||||||| ||||    
T  23719779 ttcctttttaattgttattttttgacattttacataaactaagacattcaataaatattactacttttg 23719847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 282 - 350
Target Start/End: Original strand, 38542271 - 38542339
Alignment:
Q  282 ttcctttttaattatcatttattgacattttacacaaatcaatacaatcaataaatattactacctttg 350  Q
    ||||||||||||| |||||| ||||||||||||| ||| ||| ||||| ||||| | ||||||| ||||    
T  38542271 ttcctttttaattgtcattttttgacattttacataaaccaagacaattaataattgttactacttttg 38542339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 282 - 350
Target Start/End: Complemental strand, 49089155 - 49089087
Alignment:
Q  282 ttcctttttaattatcatttattgacattttacacaaatcaatacaatcaataaatattactacctttg 350  Q
    ||||||||||||| ||| || |||| ||||||| | || ||| ||||||||||||||||||||| ||||    
T  49089155 ttcctttttaattgtcactttttgatattttactcgaaccaagacaatcaataaatattactacgtttg 49089087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 268 - 350
Target Start/End: Original strand, 9220022 - 9220104
Alignment:
Q  268 taatacaacttccattcctttttaattatcatttattgacattttacacaaatcaatacaatcaataaatattactacctttg 350  Q
    |||||| || ||| || |||||||||| ||| || |||| |||||||||||| ||| ||||| ||||||| ||||||| ||||    
T  9220022 taatactacctccgtttctttttaattgtcactttttgaaattttacacaaaacaagacaattaataaatcttactacttttg 9220104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 304 - 350
Target Start/End: Original strand, 26933789 - 26933835
Alignment:
Q  304 tgacattttacacaaatcaatacaatcaataaatattactacctttg 350  Q
    |||||||||||||||| ||| ||||||||||||| ||||||| ||||    
T  26933789 tgacattttacacaaaccaaaacaatcaataaatgttactacttttg 26933835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 343
Target Start/End: Complemental strand, 55935356 - 55935295
Alignment:
Q  282 ttcctttttaattatcatttattgacattttacacaaatcaatacaatcaataaatattact 343  Q
    ||||||||||| | ||| || |||| |||||||||||||||| ||| ||||||||| |||||    
T  55935356 ttcctttttaactgtcactttttgatattttacacaaatcaagacactcaataaatgttact 55935295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 282 - 350
Target Start/End: Complemental strand, 3036632 - 3036564
Alignment:
Q  282 ttcctttttaattatcatttattgacattttacacaaatcaatacaatcaataaatattactacctttg 350  Q
    ||||||||||||| |||| | || |||||||||| ||||||  ||||||||||||| ||| ||| ||||    
T  3036632 ttcctttttaattgtcatatttttacattttacataaatcataacaatcaataaatgttattacttttg 3036564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 286 - 350
Target Start/End: Original strand, 3436066 - 3436130
Alignment:
Q  286 tttttaattatcatttattgacattttacacaaatcaatacaatcaataaatattactacctttg 350  Q
    |||||||||||||  | ||||||||||||||||| ||| |||||||| || || |||||| ||||    
T  3436066 tttttaattatcacattttgacattttacacaaaccaagacaatcaacaattaatactacttttg 3436130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 268 - 332
Target Start/End: Complemental strand, 12252355 - 12252291
Alignment:
Q  268 taatacaacttccattcctttttaattatcatttattgacattttacacaaatcaatacaatcaa 332  Q
    |||||| || ||| ||||||||||| | |||| | ||||||||||||| ||||||| ||||||||    
T  12252355 taatactacctccgttcctttttaactgtcatattttgacattttacataaatcaagacaatcaa 12252291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 285 - 345
Target Start/End: Complemental strand, 36292862 - 36292802
Alignment:
Q  285 ctttttaattatcatttattgacattttacacaaatcaatacaatcaataaatattactac 345  Q
    ||||||||| || | || |||||||||||||| || ||| ||||||||||||| |||||||    
T  36292862 ctttttaatgattactttttgacattttacactaaccaaaacaatcaataaatgttactac 36292802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 303 - 343
Target Start/End: Original strand, 52977945 - 52977985
Alignment:
Q  303 ttgacattttacacaaatcaatacaatcaataaatattact 343  Q
    ||||||||||||||||| ||| | |||||||||||||||||    
T  52977945 ttgacattttacacaaaccaagataatcaataaatattact 52977985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 278 - 350
Target Start/End: Original strand, 3643192 - 3643264
Alignment:
Q  278 tccattcctttttaattatcatttattgacattttacacaaatcaatacaatcaataaatattactacctttg 350  Q
    ||||||||||||||| | ||| || |||||||||||||||||||||||||||||| |||| ||||||| ||||    
T  3643192 tccattcctttttaagtgtcactttttgacattttacacaaatcaatacaatcaagaaatgttactacttttg 3643264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 282 - 350
Target Start/End: Original strand, 33874546 - 33874614
Alignment:
Q  282 ttcctttttaattatcatttattgacattttacacaaatcaatacaatcaataaatattactacctttg 350  Q
    ||||||||||||| |||||| ||||||||||||||||| ||| ||||||||||||| ||||||| ||||    
T  33874546 ttcctttttaattgtcattttttgacattttacacaaaccaaaacaatcaataaatgttactacttttg 33874614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 282 - 350
Target Start/End: Complemental strand, 48152231 - 48152163
Alignment:
Q  282 ttcctttttaattatcatttattgacattttacacaaatcaatacaatcaataaatattactacctttg 350  Q
    ||||||||||||| |||||| || | |||||||||||||||||||||||||||||||||| ||| ||||    
T  48152231 ttcctttttaattgtcatttttttatattttacacaaatcaatacaatcaataaatattattacttttg 48152163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 282 - 350
Target Start/End: Complemental strand, 48214301 - 48214233
Alignment:
Q  282 ttcctttttaattatcatttattgacattttacacaaatcaatacaatcaataaatattactacctttg 350  Q
    ||||||||||||| ||| || ||||||||||||||| | ||||||||||||||||||||||||| ||||    
T  48214301 ttcctttttaattgtcactttttgacattttacacacaccaatacaatcaataaatattactacttttg 48214233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 282 - 350
Target Start/End: Complemental strand, 35315378 - 35315310
Alignment:
Q  282 ttcctttttaattatcatttattgacattttacacaaatcaatacaatcaataaatattactacctttg 350  Q
    ||||||||||||| |||||| ||||||||||||||||||||| |||||||| || | ||||||| ||||    
T  35315378 ttcctttttaattgtcattttttgacattttacacaaatcaagacaatcaacaattgttactacttttg 35315310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 283 - 350
Target Start/End: Complemental strand, 51065128 - 51065061
Alignment:
Q  283 tcctttttaattatcatttattgacattttacacaaatcaatacaatcaataaatattactacctttg 350  Q
    |||||||||||||||| || || |||||||||||||| ||| ||||||||||||| ||||||| ||||    
T  51065128 tcctttttaattatcactttttaacattttacacaaaccaagacaatcaataaatgttactacttttg 51065061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 282 - 352
Target Start/End: Complemental strand, 45145374 - 45145304
Alignment:
Q  282 ttcctttttaattatcatttattgacattttacacaaatcaatacaatcaataaatattactacctttgct 352  Q
    ||||||||||||| |||||| |||| |||||||||||| ||| ||||||||||| ||||| ||| ||||||    
T  45145374 ttcctttttaattgtcattttttgatattttacacaaaccaagacaatcaataattattattacttttgct 45145304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 278 - 350
Target Start/End: Original strand, 32853356 - 32853428
Alignment:
Q  278 tccattcctttttaattatcatttattgacattttacacaaatcaatacaatcaataaatattactacctttg 350  Q
    ||||||||||||||||| | | || |||||||||||||||||  || ||||||||||||| ||||||| ||||    
T  32853356 tccattcctttttaattgtaactttttgacattttacacaaactaagacaatcaataaatgttactacttttg 32853428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 270 - 334
Target Start/End: Original strand, 44543719 - 44543783
Alignment:
Q  270 atacaacttccattcctttttaattatcatttattgacattttacacaaatcaatacaatcaata 334  Q
    ||||||||||| || |||||||||| |||||| ||||||||||||||||| ||| | ||||||||    
T  44543719 atacaacttccgttactttttaattgtcattttttgacattttacacaaaccaagataatcaata 44543783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 282 - 344
Target Start/End: Original strand, 47104155 - 47104217
Alignment:
Q  282 ttcctttttaattatcatttattgacattttacacaaatcaatacaatcaataaatattacta 344  Q
    |||||||||||||  || || ||||||||||||| ||||||| ||||||||||||| ||||||    
T  47104155 ttcctttttaattgccactttttgacattttacataaatcaaaacaatcaataaatgttacta 47104217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 269 - 332
Target Start/End: Original strand, 51219080 - 51219143
Alignment:
Q  269 aatacaacttccattcctttttaattatcatttattgacattttacacaaatcaatacaatcaa 332  Q
    ||||| || ||| ||||||||||||| |||  ||||||||||||||||||| ||| ||||||||    
T  51219080 aatactacctccgttcctttttaattgtcacatattgacattttacacaaaccaagacaatcaa 51219143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 268 - 350
Target Start/End: Original strand, 20848710 - 20848792
Alignment:
Q  268 taatacaacttccattcctttttaattatcatttattgacattttacacaaatcaatacaatcaataaatattactacctttg 350  Q
    |||||| || ||| ||||||||||| | |||  | ||||||||||||||||| ||| | ||||||||||| ||||||| ||||    
T  20848710 taatactacctccgttcctttttaactgtcacattttgacattttacacaaaccaaaataatcaataaatgttactacttttg 20848792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 285 - 335
Target Start/End: Original strand, 39866852 - 39866902
Alignment:
Q  285 ctttttaattatcatttattgacattttacacaaatcaatacaatcaataa 335  Q
    |||||||||| ||| || ||||||||||||||||| ||| |||||||||||    
T  39866852 ctttttaattgtcactttttgacattttacacaaaccaagacaatcaataa 39866902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 282 - 332
Target Start/End: Original strand, 45513318 - 45513368
Alignment:
Q  282 ttcctttttaattatcatttattgacattttacacaaatcaatacaatcaa 332  Q
    ||||||||||||| |||| | |||| |||||||||||||||| ||||||||    
T  45513318 ttcctttttaattgtcatattttgatattttacacaaatcaaaacaatcaa 45513368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 310 - 344
Target Start/End: Original strand, 55141504 - 55141538
Alignment:
Q  310 tttacacaaatcaatacaatcaataaatattacta 344  Q
    ||||| |||||||||||||||||||||||||||||    
T  55141504 tttacgcaaatcaatacaatcaataaatattacta 55141538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 335
Target Start/End: Complemental strand, 32980886 - 32980833
Alignment:
Q  282 ttcctttttaattatcatttattgacattttacacaaatcaatacaatcaataa 335  Q
    ||||||||||||| |||  | ||||||||||||||||| ||| |||||||||||    
T  32980886 ttcctttttaattgtcacattttgacattttacacaaaccaagacaatcaataa 32980833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 286 - 350
Target Start/End: Complemental strand, 17102996 - 17102932
Alignment:
Q  286 tttttaattatcatttattgacattttacacaaatcaatacaatcaataaatattactacctttg 350  Q
    ||||||||| | |||| |||||||||||||||||| || ||||| ||||| | ||||||| ||||    
T  17102996 tttttaattgttattttttgacattttacacaaattaaaacaattaataattgttactacttttg 17102932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 282 - 350
Target Start/End: Complemental strand, 41425875 - 41425807
Alignment:
Q  282 ttcctttttaattatcatttattgacattttacacaaatcaatacaatcaataaatattactacctttg 350  Q
    ||||||||||||| |||  | || |||||||||||||| ||| ||||||||||||| || |||| ||||    
T  41425875 ttcctttttaattgtcacattttaacattttacacaaaccaagacaatcaataaatgttgctacttttg 41425807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 269 - 350
Target Start/End: Original strand, 147109 - 147190
Alignment:
Q  269 aatacaacttccattcctttttaattatcatttattgacattttacacaaatcaatacaatcaataaatattactacctttg 350  Q
    ||||| || ||| ||||||||||||| ||| || ||||||||||||||||||||| ||||| ||||||| ||||||| ||||    
T  147109 aatactacctccgttcctttttaattgtcactttttgacattttacacaaatcaaaacaattaataaatgttactacttttg 147190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 282 - 350
Target Start/End: Original strand, 9838117 - 9838185
Alignment:
Q  282 ttcctttttaattatcatttattgacattttacacaaatcaatacaatcaataaatattactacctttg 350  Q
    ||||||||||||| ||||||  ||| |||||||||||||||| ||||||||||||| ||||||| ||||    
T  9838117 ttcctttttaattgtcattttgtgatattttacacaaatcaaaacaatcaataaatgttactacttttg 9838185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 282 - 350
Target Start/End: Complemental strand, 11129077 - 11129009
Alignment:
Q  282 ttcctttttaattatcatttattgacattttacacaaatcaatacaatcaataaatattactacctttg 350  Q
    ||||||||||||| ||| || ||||||||||||||||||||| ||||| ||||||| ||||||| ||||    
T  11129077 ttcctttttaattgtcactttttgacattttacacaaatcaagacaattaataaatgttactacttttg 11129009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 278 - 350
Target Start/End: Original strand, 11676606 - 11676678
Alignment:
Q  278 tccattcctttttaattatcatttattgacattttacacaaatcaatacaatcaataaatattactacctttg 350  Q
    ||||||| ||||||||| | | || |||| |||||||||||| ||| ||||||||||||||||||||| ||||    
T  11676606 tccattcatttttaattgttactttttgatattttacacaaaccaagacaatcaataaatattactacttttg 11676678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 282 - 350
Target Start/End: Complemental strand, 24949353 - 24949285
Alignment:
Q  282 ttcctttttaattatcatttattgacattttacacaaatcaatacaatcaataaatattactacctttg 350  Q
    ||||||||||||| | |||| |||| |||||||||||| ||| ||||||||||||| ||||||| ||||    
T  24949353 ttcctttttaattgttattttttgatattttacacaaaccaaaacaatcaataaatgttactacttttg 24949285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 282 - 350
Target Start/End: Original strand, 30416070 - 30416138
Alignment:
Q  282 ttcctttttaattatcatttattgacattttacacaaatcaatacaatcaataaatattactacctttg 350  Q
    |||||||||||||||||| | ||||||||||||| ||| ||| ||||||||||| | ||||||| ||||    
T  30416070 ttcctttttaattatcatatgttgacattttacataaaccaagacaatcaataattgttactacttttg 30416138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 282 - 344
Target Start/End: Original strand, 7632032 - 7632094
Alignment:
Q  282 ttcctttttaattatcatttattgacattttacacaaatcaatacaatcaataaatattacta 344  Q
    |||||||||||| |||| || ||||||||||| | ||||||| ||||||||||| ||||||||    
T  7632032 ttcctttttaataatcactttttgacattttatataaatcaagacaatcaataattattacta 7632094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 284 - 340
Target Start/End: Original strand, 7056137 - 7056193
Alignment:
Q  284 cctttttaattatcatttattgacattttacacaaatcaatacaatcaataaatatt 340  Q
    ||||||||||| ||| || ||||||||||||||||||||| | ||||||||| ||||    
T  7056137 cctttttaattgtcactttttgacattttacacaaatcaagataatcaataattatt 7056193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 282 - 350
Target Start/End: Complemental strand, 22050294 - 22050226
Alignment:
Q  282 ttcctttttaattatcatttattgacattttacacaaatcaatacaatcaataaatattactacctttg 350  Q
    ||||||||||||| |||  | ||||||||||||||||| ||| ||||||||||| | ||||||| ||||    
T  22050294 ttcctttttaattgtcacattttgacattttacacaaaccaagacaatcaataattgttactacttttg 22050226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 282 - 350
Target Start/End: Complemental strand, 23777542 - 23777474
Alignment:
Q  282 ttcctttttaattatcatttattgacattttacacaaatcaatacaatcaataaatattactacctttg 350  Q
    ||||||||||||| ||| || ||||||||||||||||| ||| ||| | ||||||| ||||||| ||||    
T  23777542 ttcctttttaattgtcactttttgacattttacacaaaccaagacattaaataaatgttactacttttg 23777474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 282 - 350
Target Start/End: Original strand, 26470718 - 26470786
Alignment:
Q  282 ttcctttttaattatcatttattgacattttacacaaatcaatacaatcaataaatattactacctttg 350  Q
    ||||||||||||| ||| || ||||||||||||| ||| ||| ||||||||||| | ||||||| ||||    
T  26470718 ttcctttttaattgtcactttttgacattttacataaaccaagacaatcaataattgttactacttttg 26470786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 282 - 350
Target Start/End: Original strand, 26485680 - 26485748
Alignment:
Q  282 ttcctttttaattatcatttattgacattttacacaaatcaatacaatcaataaatattactacctttg 350  Q
    ||||||||||||| ||| || ||||||||||||| ||| ||| ||| ||||||||| ||||||| ||||    
T  26485680 ttcctttttaattgtcactttttgacattttacataaaccaagacattcaataaatgttactacttttg 26485748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 275 - 350
Target Start/End: Original strand, 19645710 - 19645785
Alignment:
Q  275 acttccattcctttttaattatcatttattgacattttacacaaatcaatacaatcaataaatattactacctttg 350  Q
    |||||| ||| ||||||||| ||| || |||||||||||||||||  || |||||||||| || ||||||| ||||    
T  19645710 acttccgttcttttttaattgtcactttttgacattttacacaaactaagacaatcaatagatgttactacttttg 19645785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 282 - 348
Target Start/End: Complemental strand, 30237485 - 30237420
Alignment:
Q  282 ttcctttttaattatcatttattgacattttacacaaatcaatacaatcaataaatattactacctt 348  Q
    ||||||||||||| |||||| || ||||||||||||||  |  ||||||||||||||||||| ||||    
T  30237485 ttcctttttaattgtcatttttt-acattttacacaaaaaataacaatcaataaatattactccctt 30237420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 282 - 332
Target Start/End: Complemental strand, 30389012 - 30388962
Alignment:
Q  282 ttcctttttaattatcatttattgacattttacacaaatcaatacaatcaa 332  Q
    |||||||||||||||||  | ||||||||||||||||| ||| ||||||||    
T  30389012 ttcctttttaattatcacattttgacattttacacaaaccaagacaatcaa 30388962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 286 - 335
Target Start/End: Complemental strand, 8176675 - 8176626
Alignment:
Q  286 tttttaattatcatttattgacattttacacaaatcaatacaatcaataa 335  Q
    ||||||||| ||| || || |||||||||||||||||| |||||||||||    
T  8176675 tttttaattgtcactttttaacattttacacaaatcaagacaatcaataa 8176626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 335
Target Start/End: Original strand, 17123976 - 17124033
Alignment:
Q  278 tccattcctttttaattatcatttattgacattttacacaaatcaatacaatcaataa 335  Q
    ||||||||||||||||| |||  | |||||||||||||||||  || |||||||||||    
T  17123976 tccattcctttttaattgtcacattttgacattttacacaaactaagacaatcaataa 17124033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 350
Target Start/End: Original strand, 22400582 - 22400627
Alignment:
Q  305 gacattttacacaaatcaatacaatcaataaatattactacctttg 350  Q
    ||||||||||||||| ||||||| ||||||||| ||||||| ||||    
T  22400582 gacattttacacaaaccaatacattcaataaatgttactacttttg 22400627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 282 - 350
Target Start/End: Complemental strand, 7170398 - 7170330
Alignment:
Q  282 ttcctttttaattatcatttattgacattttacacaaatcaatacaatcaataaatattactacctttg 350  Q
    |||||||||||||  ||||| ||   ||||||||||||| || ||||||||||||| ||||||| ||||    
T  7170398 ttcctttttaattgccattttttagtattttacacaaattaagacaatcaataaatgttactacttttg 7170330  T

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Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 282 - 350
Target Start/End: Complemental strand, 34730805 - 34730738
Alignment:
Q  282 ttcctttttaattatcatttattgacattttacacaaatcaatacaatcaataaatattactacctttg 350  Q
    |||||||||||||||||||| |||| |||||| ||||| ||| ||| ||||| ||| ||||||| ||||    
T  34730805 ttcctttttaattatcattt-ttgatattttatacaaaccaagacattcaatgaatgttactacttttg 34730738  T

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Target: scaffold2146 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold2146
Description:

Target: scaffold2146; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 282 - 345
Target Start/End: Complemental strand, 798 - 735
Alignment:
Q  282 ttcctttttaattatcatttattgacattttacacaaatcaatacaatcaataaatattactac 345  Q
    ||||||||||||| ||| || || |||||||||| ||||||||||||||||||||||| |||||    
T  798 ttcctttttaattttcactttttaacattttacataaatcaatacaatcaataaatataactac 735  T

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Target: scaffold0135 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0135
Description:

Target: scaffold0135; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 268 - 350
Target Start/End: Original strand, 30673 - 30755
Alignment:
Q  268 taatacaacttccattcctttttaattatcatttattgacattttacacaaatcaatacaatcaataaatattactacctttg 350  Q
    |||||| || ||| || |||||||||| ||| || |||| |||||||||||| ||| ||||| ||||||| ||||||| ||||    
T  30673 taatactacctccgtttctttttaattgtcactttttgaaattttacacaaaacaagacaattaataaatcttactacttttg 30755  T

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Target: scaffold0001 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 350
Target Start/End: Original strand, 419490 - 419555
Alignment:
Q  285 ctttttaattatcatttattgacattttacacaaatcaatacaatcaataaatattactacctttg 350  Q
    |||||||||| ||| ||  |||||||||||| ||| ||| ||||||||||||| ||||||| ||||    
T  419490 ctttttaattgtcactttgtgacattttacataaaccaagacaatcaataaatgttactacttttg 419555  T

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Target: scaffold0325 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0325
Description:

Target: scaffold0325; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 282 - 350
Target Start/End: Complemental strand, 561 - 493
Alignment:
Q  282 ttcctttttaattatcatttattgacattttacacaaatcaatacaatcaataaatattactacctttg 350  Q
    ||||||||||||| |||||| || |||||||||  |||  || ||||||||||||||||| ||| ||||    
T  561 ttcctttttaattgtcattttttaacattttacgtaaactaagacaatcaataaatattattacttttg 493  T

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Target: scaffold0274 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0274
Description:

Target: scaffold0274; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 282 - 350
Target Start/End: Original strand, 235 - 302
Alignment:
Q  282 ttcctttttaattatcatttattgacattttacacaaatcaatacaatcaataaatattactacctttg 350  Q
    |||||||||||||||||||| |||| |||||| ||||| ||| ||| ||||| ||| ||||||| ||||    
T  235 ttcctttttaattatcattt-ttgatattttatacaaaccaagacattcaatgaatgttactacttttg 302  T

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