View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2510_high_13 (Length: 341)
Name: NF2510_high_13
Description: NF2510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2510_high_13 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 314; Significance: 1e-177; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 1 - 322
Target Start/End: Original strand, 33048702 - 33049023
Alignment:
| Q |
1 |
gttgcaacttctatttcactatggatatctatgatattggtaggttcttatgtcttgtatgcaaagaagtttgagaatacatggagaggattttcaaagg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33048702 |
gttgcaacttctatttcactatggatatctatgatattggtaggttcttatgtcttgtatgcaaagaagtttgagaatacatggagaggattttcaaagg |
33048801 |
T |
|
| Q |
101 |
aatcatttcagtacttgtttacaaacattaaactagctcttccctctgcagcaatggtatggtatgtcccttttgatgattgatcttagaaaacatagtt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33048802 |
aatcatttcagtacttgtttacaaacattaaactagctcttccctctgcagcaatggtatggtatgtcccttttgatgattgatcttagaaaacatagtt |
33048901 |
T |
|
| Q |
201 |
tgcaaaattattaggcccggtttactttgagcaacattttcaaaccagctgagttacccaatcccccggtcacttggcttctagtttgaacactattaga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33048902 |
tgcaaaattattaggcccggtttactttgagcaacattttcaaaccagttgagttacccaatcccccggtcacttggcttctagtttgaacactattaga |
33049001 |
T |
|
| Q |
301 |
cttttgttgtttaatgaaagat |
322 |
Q |
| |
|
|||||||| ||||||||||||| |
|
|
| T |
33049002 |
cttttgttatttaatgaaagat |
33049023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 1 - 166
Target Start/End: Original strand, 33069783 - 33069948
Alignment:
| Q |
1 |
gttgcaacttctatttcactatggatatctatgatattggtaggttcttatgtcttgtatgcaaagaagtttgagaatacatggagaggattttcaaagg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||| |||| |||||||||||||||||||| ||||||||||||| |||||||||| | |
|
|
| T |
33069783 |
gttgcaacttctatttcactatggatatctatgatattagtaggtttttatatcttgtatgcaaagaagtttaagaatacatggaggggattttcaatgc |
33069882 |
T |
|
| Q |
101 |
aatcatttcagtacttgtttacaaacattaaactagctcttccctctgcagcaatggtatggtatg |
166 |
Q |
| |
|
|||||||||||||||||||||||||| | ||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
33069883 |
aatcatttcagtacttgtttacaaacttgaaactagctcttccctctgcagcaatgctatggtatg |
33069948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 1 - 166
Target Start/End: Original strand, 33079751 - 33079916
Alignment:
| Q |
1 |
gttgcaacttctatttcactatggatatctatgatattggtaggttcttatgtcttgtatgcaaagaagtttgagaatacatggagaggattttcaaagg |
100 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |||||||||||||||||||||||| | |
|
|
| T |
33079751 |
gttgcaatttctatttcactatggatatctatgatattggtaggtttttatatcttgtatgcaaagaagtttaagaatacatggagaggattttcaatgc |
33079850 |
T |
|
| Q |
101 |
aatcatttcagtacttgtttacaaacattaaactagctcttccctctgcagcaatggtatggtatg |
166 |
Q |
| |
|
||||||||||||||||||||||||| | ||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
33079851 |
gatcatttcagtacttgtttacaaacttgaaactagctcttccctctgcagcaatgctatggtatg |
33079916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 33088235 - 33088372
Alignment:
| Q |
1 |
gttgcaacttctatttcactatggatatctatgatattggtaggttcttatgtcttgtatgcaaagaagtttgagaatacatggagaggattttcaaagg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||| || |||| || ||||| ||||||||||||||||||||||||| ||||| |||||||||| | |
|
|
| T |
33088235 |
gttgcaacttctatttcactatggatatcaatgataatgttaggatcatatgttatgtatgcaaagaagtttgagaatacgtggaggggattttcaatgc |
33088334 |
T |
|
| Q |
101 |
aatcatttcagtacttgtttacaaacattaaactagct |
138 |
Q |
| |
|
|||||||| | ||||||||| ||||||| ||||||||| |
|
|
| T |
33088335 |
aatcattttattacttgtttccaaacatgaaactagct |
33088372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 33095731 - 33095868
Alignment:
| Q |
1 |
gttgcaacttctatttcactatggatatctatgatattggtaggttcttatgtcttgtatgcaaagaagtttgagaatacatggagaggattttcaaagg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||| || |||| || ||||| ||||||||||||||||||||||||| ||||| |||||||||| | |
|
|
| T |
33095731 |
gttgcaacttctatttcactatggatatcaatgataatgttaggatcatatgttatgtatgcaaagaagtttgagaatacgtggaggggattttcaatgc |
33095830 |
T |
|
| Q |
101 |
aatcatttcagtacttgtttacaaacattaaactagct |
138 |
Q |
| |
|
|||||||| | ||||||||| ||||||| ||||||||| |
|
|
| T |
33095831 |
aatcattttattacttgtttccaaacatgaaactagct |
33095868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 1 - 166
Target Start/End: Original strand, 33061816 - 33061981
Alignment:
| Q |
1 |
gttgcaacttctatttcactatggatatctatgatattggtaggttcttatgtcttgtatgcaaagaagtttgagaatacatggagaggattttcaaagg |
100 |
Q |
| |
|
||||| |||||||||||||| |||||||| |||||| || |||| | |||||| ||||||||||||||||| ||||||||||||||||||| || | | |
|
|
| T |
33061816 |
gttgccacttctatttcactctggatatcgatgataatgttaggattttatgtaatgtatgcaaagaagtttaagaatacatggagaggattctccatgc |
33061915 |
T |
|
| Q |
101 |
aatcatttcagtacttgtttacaaacattaaactagctcttccctctgcagcaatggtatggtatg |
166 |
Q |
| |
|
|||||||| | ||| ||||| ||||||| ||||||||| | || ||||| |||||||||||||||| |
|
|
| T |
33061916 |
aatcatttgattacctgtttgcaaacatgaaactagctttgccttctgctgcaatggtatggtatg |
33061981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 277 - 309
Target Start/End: Original strand, 33062755 - 33062787
Alignment:
| Q |
277 |
gcttctagtttgaacactattagacttttgttg |
309 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| |
|
|
| T |
33062755 |
gcttctagtttgaacactatcagacttttgttg |
33062787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 5 - 138
Target Start/End: Original strand, 18485831 - 18485964
Alignment:
| Q |
5 |
caacttctatttcactatggatatctatgatattggtaggttcttatgtcttgtatgcaaagaagtttgagaatacatggagaggattttcaaaggaatc |
104 |
Q |
| |
|
||||||| |||||||||||||||||| ||||||||||||| | ||||||||||||||||||||||||| | |||| |||||||||| |||||| |||||| |
|
|
| T |
18485831 |
caacttcgatttcactatggatatctttgatattggtaggattttatgtcttgtatgcaaagaagtttaaaaatatatggagaggaatttcaatggaatc |
18485930 |
T |
|
| Q |
105 |
atttcagtacttgtttacaaacattaaactagct |
138 |
Q |
| |
|
|||||||||||||||||||||| | ||||||||| |
|
|
| T |
18485931 |
atttcagtacttgtttacaaacctaaaactagct |
18485964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University