View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2510_high_14 (Length: 339)
Name: NF2510_high_14
Description: NF2510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2510_high_14 |
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Alignment Details
Target: chr3 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 20 - 325
Target Start/End: Complemental strand, 2352017 - 2351712
Alignment:
| Q |
20 |
atatttctctttgtttatgcatttagcttacctcatattcgttcaacttaactcacaactttgattgcgtcaacaaaaactcataagtttgattttttac |
119 |
Q |
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| T |
2352017 |
atatttctctttgattatgcatttagcttacctcatattcgttcaacttaactcacaactttgattgcgtcaacaaaaactcataagtttgattttttac |
2351918 |
T |
|
| Q |
120 |
tttgatatgcatttaacttacgtcataacacaacacccatgaatatatttctctttgtcggtacaatgacgtacactccaagatatatcaatctaaaatt |
219 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| ||||||||||| ||||||||||||||||||||||||| |
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| T |
2351917 |
tttgatatgcatttaacttacgtcataacgcaacacccatgaatatatctctctttgtcggtgcaatgacgtacgctccaagatatatcaatctaaaatt |
2351818 |
T |
|
| Q |
220 |
taaaaaagttacactgattgaatnnnnnnnntaaatgcgaatgtgtaattataattcatttcacttaataaatcaattataattaccaactattttttcg |
319 |
Q |
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||||||||||| ||| ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2351817 |
taaaaaagttatactaatttaataaaaacaataaatgcgaatgtgtaattataattcatttcacttaataaatcaattataattaccaactattttttcg |
2351718 |
T |
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| Q |
320 |
attgcc |
325 |
Q |
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|||||| |
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| T |
2351717 |
attgcc |
2351712 |
T |
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