View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2510_high_21 (Length: 236)

Name: NF2510_high_21
Description: NF2510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2510_high_21
NF2510_high_21
[»] chr6 (10 HSPs)
chr6 (56-218)||(30503981-30504143)
chr6 (6-63)||(32251154-32251211)
chr6 (6-66)||(24356258-24356318)
chr6 (6-64)||(19811935-19811993)
chr6 (6-64)||(24635687-24635745)
chr6 (6-63)||(1751635-1751692)
chr6 (15-64)||(9838335-9838384)
chr6 (6-63)||(17193138-17193195)
chr6 (6-63)||(19645876-19645933)
chr6 (6-63)||(30388701-30388758)
[»] chr4 (31 HSPs)
chr4 (6-64)||(34603606-34603664)
chr4 (2-63)||(18091225-18091286)
chr4 (2-63)||(30152029-30152090)
chr4 (2-64)||(8457111-8457173)
chr4 (2-63)||(37551865-37551926)
chr4 (6-63)||(38009970-38010027)
chr4 (6-63)||(48087681-48087738)
chr4 (6-63)||(7627683-7627741)
chr4 (6-64)||(30939137-30939195)
chr4 (6-63)||(19093357-19093414)
chr4 (6-63)||(20294267-20294324)
chr4 (6-63)||(34361039-34361096)
chr4 (1-48)||(14090238-14090285)
chr4 (2-64)||(1391371-1391433)
chr4 (6-64)||(37502003-37502061)
chr4 (6-64)||(52677349-52677407)
chr4 (6-63)||(3802143-3802200)
chr4 (15-64)||(5374563-5374612)
chr4 (2-63)||(14949284-14949345)
chr4 (6-63)||(48510073-48510130)
chr4 (6-65)||(6150675-6150734)
chr4 (6-64)||(19527412-19527470)
chr4 (6-64)||(42133019-42133077)
chr4 (6-64)||(44217688-44217746)
chr4 (6-64)||(55430507-55430565)
chr4 (6-63)||(13629397-13629454)
chr4 (2-63)||(41813625-41813686)
chr4 (6-63)||(43887966-43888023)
chr4 (6-63)||(48782183-48782240)
chr4 (15-63)||(36292608-36292656)
chr4 (6-38)||(56499818-56499850)
[»] chr2 (20 HSPs)
chr2 (2-63)||(33947631-33947692)
chr2 (2-48)||(36173063-36173109)
chr2 (2-60)||(42088877-42088935)
chr2 (6-63)||(928237-928294)
chr2 (15-64)||(13849930-13849979)
chr2 (6-67)||(30544496-30544557)
chr2 (6-63)||(32854986-32855043)
chr2 (6-58)||(37660129-37660181)
chr2 (6-65)||(9369952-9370011)
chr2 (6-61)||(25558389-25558444)
chr2 (1-64)||(45065051-45065114)
chr2 (6-64)||(14288410-14288468)
chr2 (6-65)||(18904117-18904172)
chr2 (6-63)||(11222522-11222579)
chr2 (6-63)||(15183207-15183264)
chr2 (6-63)||(19594331-19594388)
chr2 (6-63)||(34884744-34884801)
chr2 (2-59)||(42263705-42263762)
chr2 (18-70)||(14284101-14284153)
chr2 (15-63)||(32674191-32674239)
[»] chr1 (12 HSPs)
chr1 (2-63)||(52759008-52759069)
chr1 (6-64)||(2571928-2571986)
chr1 (15-64)||(21927905-21927954)
chr1 (6-63)||(32168512-32168569)
chr1 (6-64)||(19929666-19929724)
chr1 (6-63)||(1677196-1677253)
chr1 (2-63)||(18344306-18344367)
chr1 (6-63)||(31588939-31588996)
chr1 (6-63)||(36318333-36318390)
chr1 (6-63)||(49908382-49908439)
chr1 (31-63)||(10630391-10630423)
chr1 (15-63)||(52748997-52749045)
[»] chr8 (13 HSPs)
chr8 (2-63)||(6660933-6660994)
chr8 (2-63)||(6741335-6741396)
chr8 (6-63)||(13132319-13132376)
chr8 (6-63)||(45317632-45317689)
chr8 (2-64)||(30205439-30205501)
chr8 (2-55)||(40608022-40608076)
chr8 (6-63)||(34046831-34046888)
chr8 (6-58)||(38074261-38074313)
chr8 (1-64)||(8954897-8954960)
chr8 (1-64)||(31760225-31760287)
chr8 (6-63)||(11163246-11163303)
chr8 (14-63)||(31028634-31028683)
chr8 (6-55)||(41890510-41890559)
[»] chr3 (13 HSPs)
chr3 (6-63)||(35077367-35077424)
chr3 (6-63)||(47844047-47844104)
chr3 (1-63)||(24569530-24569592)
chr3 (2-63)||(53290966-53291027)
chr3 (6-57)||(28226413-28226464)
chr3 (6-66)||(47104364-47104424)
chr3 (17-64)||(32853543-32853590)
chr3 (6-64)||(1201042-1201100)
chr3 (6-64)||(2642689-2642747)
chr3 (6-64)||(33874755-33874813)
chr3 (6-63)||(23771267-23771324)
chr3 (6-63)||(34750635-34750692)
chr3 (6-63)||(53745490-53745547)
[»] chr5 (19 HSPs)
chr5 (6-65)||(13957360-13957419)
chr5 (6-63)||(4440053-4440108)
chr5 (6-63)||(7579868-7579925)
chr5 (6-63)||(10359435-10359492)
chr5 (6-58)||(21150459-21150511)
chr5 (14-64)||(28463593-28463643)
chr5 (2-64)||(36481037-36481098)
chr5 (2-63)||(4608986-4609047)
chr5 (2-63)||(5144194-5144255)
chr5 (6-63)||(6007845-6007902)
chr5 (2-63)||(18437519-18437580)
chr5 (6-63)||(18794745-18794802)
chr5 (6-63)||(25785869-25785926)
chr5 (6-63)||(40927115-40927172)
chr5 (6-63)||(42394328-42394385)
chr5 (15-63)||(1795326-1795374)
chr5 (7-63)||(18676614-18676670)
chr5 (6-58)||(21157600-21157652)
chr5 (6-70)||(25343915-25343979)
[»] chr7 (19 HSPs)
chr7 (6-64)||(33071886-33071943)
chr7 (6-63)||(3177910-3177967)
chr7 (6-63)||(8921026-8921083)
chr7 (2-63)||(9602095-9602156)
chr7 (2-63)||(9829666-9829727)
chr7 (6-63)||(46563329-46563386)
chr7 (7-63)||(48981587-48981643)
chr7 (15-65)||(18470285-18470335)
chr7 (2-63)||(35859946-35860008)
chr7 (6-64)||(42842072-42842130)
chr7 (6-63)||(8966106-8966163)
chr7 (6-63)||(20035028-20035085)
chr7 (6-63)||(20045439-20045496)
chr7 (6-63)||(30586882-30586939)
chr7 (6-63)||(31430539-31430596)
chr7 (15-64)||(41889532-41889581)
chr7 (6-63)||(43874288-43874345)
chr7 (6-63)||(47408118-47408175)
chr7 (15-63)||(41675401-41675449)
[»] scaffold0003 (1 HSPs)
scaffold0003 (6-63)||(252574-252631)
[»] scaffold0009 (1 HSPs)
scaffold0009 (15-61)||(147341-147387)
[»] scaffold0040 (1 HSPs)
scaffold0040 (6-63)||(69080-69137)
[»] scaffold0002 (1 HSPs)
scaffold0002 (2-59)||(492540-492597)


Alignment Details
Target: chr6 (Bit Score: 83; Significance: 2e-39; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 56 - 218
Target Start/End: Complemental strand, 30504143 - 30503981
Alignment:
Q  56 agggagtaaattctagtgtcaaatagagagcaagagtccgtactttttaagacactggttggcaata-cnnnnnnnaataacaaagtctgagatatgatt 154  Q
    ||||| ||||||||||||||||||||||| ||||||| |||||||||||||||||||||| |||||| |       |||||  ||||||||||| |||||    
T  30504143 agggactaaattctagtgtcaaatagagaccaagagtacgtactttttaagacactggttagcaatatctttttttaataatgaagtctgagatttgatt 30504044  T
Q  155 tctgacagctattaattgcataaacaatctttccctcgtttcttgggaaactaaaaatagatga 218  Q
    ||||||||||||||||||||||||||||||||  | | |||||||||||||||| |||||||||    
T  30504043 tctgacagctattaattgcataaacaatctttatc-cttttcttgggaaactaataatagatga 30503981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 63
Target Start/End: Original strand, 32251154 - 32251211
Alignment:
Q  6 ttaattagaaacaaaaaatttctgtaaaagtgacagttataaagaaacggagggagta 63  Q
    ||||||||||||||||| ||| || |||||||||| ||||||| |||| |||||||||    
T  32251154 ttaattagaaacaaaaattttatgcaaaagtgacaattataaaaaaacagagggagta 32251211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 66
Target Start/End: Original strand, 24356258 - 24356318
Alignment:
Q  6 ttaattagaaacaaaaaatttctgtaaaagtgacagttataaagaaacggagggagtaaat 66  Q
    |||| ||| ||||| |||||||| ||||||||||| ||| |||| ||||||||||||||||    
T  24356258 ttaaataggaacaataaatttctctaaaagtgacaattaaaaaggaacggagggagtaaat 24356318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 64
Target Start/End: Complemental strand, 19811993 - 19811935
Alignment:
Q  6 ttaattagaaacaaaaaatttctgtaaaagtgacagttataaagaaacggagggagtaa 64  Q
    |||||||||||||||||| || || ||| |||||| ||| |||| ||||||||||||||    
T  19811993 ttaattagaaacaaaaaaattatgcaaacgtgacaattaaaaaggaacggagggagtaa 19811935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 64
Target Start/End: Complemental strand, 24635745 - 24635687
Alignment:
Q  6 ttaattagaaacaaaaaatttctgtaaaagtgacagttataaagaaacggagggagtaa 64  Q
    |||| ||||||||||||||||||  ||||| |||| ||| |||| ||||||||||||||    
T  24635745 ttaaatagaaacaaaaaatttctccaaaagggacacttaaaaaggaacggagggagtaa 24635687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 63
Target Start/End: Original strand, 1751635 - 1751692
Alignment:
Q  6 ttaattagaaacaaaaaatttctgtaaaagtgacagttataaagaaacggagggagta 63  Q
    |||| ||| ||||||||||||||  |||||||||| ||| |||| |||||||||||||    
T  1751635 ttaaataggaacaaaaaatttcttcaaaagtgacacttaaaaaggaacggagggagta 1751692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 64
Target Start/End: Original strand, 9838335 - 9838384
Alignment:
Q  15 aacaaaaaatttctgtaaaagtgacagttataaagaaacggagggagtaa 64  Q
    ||||||||||||||  |||||||||| ||| |||| ||||||||||||||    
T  9838335 aacaaaaaatttctccaaaagtgacacttaaaaaggaacggagggagtaa 9838384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 63
Target Start/End: Complemental strand, 17193195 - 17193138
Alignment:
Q  6 ttaattagaaacaaaaaatttctgtaaaagtgacagttataaagaaacggagggagta 63  Q
    |||| ||| ||||||||||||||  |||||||||| ||| |||| |||||||||||||    
T  17193195 ttaaataggaacaaaaaatttctccaaaagtgacacttaaaaaggaacggagggagta 17193138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 63
Target Start/End: Original strand, 19645876 - 19645933
Alignment:
Q  6 ttaattagaaacaaaaaatttctgtaaaagtgacagttataaagaaacggagggagta 63  Q
    |||| ||||||||||||||||||  |||||||||| ||| |||| ||| |||||||||    
T  19645876 ttaaatagaaacaaaaaatttctccaaaagtgacacttaaaaaggaacagagggagta 19645933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 63
Target Start/End: Complemental strand, 30388758 - 30388701
Alignment:
Q  6 ttaattagaaacaaaaaatttctgtaaaagtgacagttataaagaaacggagggagta 63  Q
    |||||||| |||||||| |||||  |||||||||| ||| |||| |||||||||||||    
T  30388758 ttaattaggaacaaaaattttcttcaaaagtgacacttaaaaaggaacggagggagta 30388701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 31)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 6 - 64
Target Start/End: Complemental strand, 34603664 - 34603606
Alignment:
Q  6 ttaattagaaacaaaaaatttctgtaaaagtgacagttataaagaaacggagggagtaa 64  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  34603664 ttaattagaaacaaaaaatttctgtaaaagtgacagttataaaggaacggagggagtaa 34603606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 2 - 63
Target Start/End: Complemental strand, 18091286 - 18091225
Alignment:
Q  2 acacttaattagaaacaaaaaatttctgtaaaagtgacagttataaagaaacggagggagta 63  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||    
T  18091286 acacttaattagaaacaaaaaatttctgtaaaagtgacagttataaaggaacggaggtagta 18091225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 2 - 63
Target Start/End: Original strand, 30152029 - 30152090
Alignment:
Q  2 acacttaattagaaacaaaaaatttctgtaaaagtgacagttataaagaaacggagggagta 63  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||| || ||||| ||||    
T  30152029 acacttaattagaaacaaaaaatttatgtaaaagtgacagttataaaggaatggaggtagta 30152090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 2 - 64
Target Start/End: Original strand, 8457111 - 8457173
Alignment:
Q  2 acacttaattagaaacaaaaaatttctgtaaaagtgacagttataaagaaacggagggagtaa 64  Q
    ||||||||| |||||||||||| ||||||||||||||| ||||||||| |||||||| |||||    
T  8457111 acacttaataagaaacaaaaaaattctgtaaaagtgacggttataaaggaacggaggtagtaa 8457173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 2 - 63
Target Start/End: Original strand, 37551865 - 37551926
Alignment:
Q  2 acacttaattagaaacaaaaaatttctgtaaaagtgacagttataaagaaacggagggagta 63  Q
    |||||||||||||||||||||||||||  |||||||||| ||| |||| |||||||||||||    
T  37551865 acacttaattagaaacaaaaaatttctacaaaagtgacaattaaaaaggaacggagggagta 37551926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 6 - 63
Target Start/End: Original strand, 38009970 - 38010027
Alignment:
Q  6 ttaattagaaacaaaaaatttctgtaaaagtgacagttataaagaaacggagggagta 63  Q
    |||||| ||||||||||| || |||||||||||||||||||||| |||||||||||||    
T  38009970 ttaattggaaacaaaaaaattatgtaaaagtgacagttataaaggaacggagggagta 38010027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 6 - 63
Target Start/End: Complemental strand, 48087738 - 48087681
Alignment:
Q  6 ttaattagaaacaaaaaatttctgtaaaagtgacagttataaagaaacggagggagta 63  Q
    ||||||| |||||||||||||  ||||||||||||||||||||| |||||||||||||    
T  48087738 ttaattaaaaacaaaaaatttaagtaaaagtgacagttataaaggaacggagggagta 48087681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 6 - 63
Target Start/End: Original strand, 7627683 - 7627741
Alignment:
Q  6 ttaattagaaacaaaaaa-tttctgtaaaagtgacagttataaagaaacggagggagta 63  Q
    |||||||||||||||||| ||| ||||||||| | ||||||||||||||||||||||||    
T  7627683 ttaattagaaacaaaaaaatttatgtaaaagttatagttataaagaaacggagggagta 7627741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 6 - 64
Target Start/End: Complemental strand, 30939195 - 30939137
Alignment:
Q  6 ttaattagaaacaaaaaatttctgtaaaagtgacagttataaagaaacggagggagtaa 64  Q
    |||| |||||||||||||||||| ||||||||||| ||| ||||||||||||| |||||    
T  30939195 ttaaatagaaacaaaaaatttctctaaaagtgacaattaaaaagaaacggaggaagtaa 30939137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 6 - 63
Target Start/End: Original strand, 19093357 - 19093414
Alignment:
Q  6 ttaattagaaacaaaaaatttctgtaaaagtgacagttataaagaaacggagggagta 63  Q
    |||| |||||||||||||||||| |||||| |||| ||| ||||||||||||||||||    
T  19093357 ttaaatagaaacaaaaaatttctttaaaagagacacttaaaaagaaacggagggagta 19093414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 6 - 63
Target Start/End: Complemental strand, 20294324 - 20294267
Alignment:
Q  6 ttaattagaaacaaaaaatttctgtaaaagtgacagttataaagaaacggagggagta 63  Q
    |||||||||||||||||| || || |||||||||| ||| ||||||||||||||||||    
T  20294324 ttaattagaaacaaaaaaattatgcaaaagtgacaattaaaaagaaacggagggagta 20294267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 6 - 63
Target Start/End: Complemental strand, 34361096 - 34361039
Alignment:
Q  6 ttaattagaaacaaaaaatttctgtaaaagtgacagttataaagaaacggagggagta 63  Q
    |||| ||| |||||||||||||| ||||||||||| ||| ||||||||||||||||||    
T  34361096 ttaaataggaacaaaaaatttctctaaaagtgacaattaaaaagaaacggagggagta 34361039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 14090285 - 14090238
Alignment:
Q  1 aacacttaattagaaacaaaaaatttctgtaaaagtgacagttataaa 48  Q
    |||| ||||||| ||||||||||||||| |||||||||||||||||||    
T  14090285 aacagttaattataaacaaaaaatttctataaaagtgacagttataaa 14090238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 2 - 64
Target Start/End: Original strand, 1391371 - 1391433
Alignment:
Q  2 acacttaattagaaacaaaaaatttctgtaaaagtgacagttataaagaaacggagggagtaa 64  Q
    ||||||||||||||||||    ||| |||||||||||| ||||||||| ||||||||||||||    
T  1391371 acacttaattagaaacaatttttttttgtaaaagtgacggttataaaggaacggagggagtaa 1391433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 6 - 64
Target Start/End: Complemental strand, 37502061 - 37502003
Alignment:
Q  6 ttaattagaaacaaaaaatttctgtaaaagtgacagttataaagaaacggagggagtaa 64  Q
    |||| ||||||||||||||||||  |||||||||| ||| |||| ||||||||||||||    
T  37502061 ttaaatagaaacaaaaaatttctccaaaagtgacacttaaaaaggaacggagggagtaa 37502003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 6 - 64
Target Start/End: Original strand, 52677349 - 52677407
Alignment:
Q  6 ttaattagaaacaaaaaatttctgtaaaagtgacagttataaagaaacggagggagtaa 64  Q
    |||| ||| |||||||||||||| ||||||||||| ||| |||| ||||||||||||||    
T  52677349 ttaaataggaacaaaaaatttctctaaaagtgacacttaaaaaggaacggagggagtaa 52677407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 63
Target Start/End: Complemental strand, 3802200 - 3802143
Alignment:
Q  6 ttaattagaaacaaaaaatttctgtaaaagtgacagttataaagaaacggagggagta 63  Q
    ||||||||||||||||||||| || |||| ||||| ||| |||| |||||||||||||    
T  3802200 ttaattagaaacaaaaaatttatgcaaaaatgacaattaaaaaggaacggagggagta 3802143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 64
Target Start/End: Original strand, 5374563 - 5374612
Alignment:
Q  15 aacaaaaaatttctgtaaaagtgacagttataaagaaacggagggagtaa 64  Q
    ||||||||||||||  |||||||||| ||| |||||||||||||||||||    
T  5374563 aacaaaaaatttctccaaaagtgacacttaaaaagaaacggagggagtaa 5374612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 63
Target Start/End: Original strand, 14949284 - 14949345
Alignment:
Q  2 acacttaattagaaacaaaaaatttctgtaaaagtgacagttataaagaaacggagggagta 63  Q
    |||||||||||||||||||||| ||  |||||||||||| |||||||| ||| |||| ||||    
T  14949284 acacttaattagaaacaaaaaaattacgtaaaagtgacaattataaaggaacagaggaagta 14949345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 63
Target Start/End: Original strand, 48510073 - 48510130
Alignment:
Q  6 ttaattagaaacaaaaaatttctgtaaaagtgacagttataaagaaacggagggagta 63  Q
    ||||||| ||||||||  ||| || |||||||||| ||||||||||||||||||||||    
T  48510073 ttaattaaaaacaaaatctttatgcaaaagtgacaattataaagaaacggagggagta 48510130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 65
Target Start/End: Complemental strand, 6150734 - 6150675
Alignment:
Q  6 ttaattagaaacaaaaaatttctgtaaaagtgacagttataaagaaacggagggagtaaa 65  Q
    |||||||||||||||||| || || |||||||||| ||| |||| || ||||||||||||    
T  6150734 ttaattagaaacaaaaaaattatgcaaaagtgacaattaaaaaggaatggagggagtaaa 6150675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 64
Target Start/End: Original strand, 19527412 - 19527470
Alignment:
Q  6 ttaattagaaacaaaaaatttctgtaaaagtgacagttataaagaaacggagggagtaa 64  Q
    |||| ||| |||||||| |||||  |||||||||| ||| |||||||||||||||||||    
T  19527412 ttaaataggaacaaaaattttctccaaaagtgacacttaaaaagaaacggagggagtaa 19527470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 64
Target Start/End: Complemental strand, 42133077 - 42133019
Alignment:
Q  6 ttaattagaaacaaaaaatttctgtaaaagtgacagttataaagaaacggagggagtaa 64  Q
    |||| ||| |||||||||||||| ||||||||||  ||| |||| ||||||||||||||    
T  42133077 ttaaataggaacaaaaaatttctctaaaagtgacgattaaaaaggaacggagggagtaa 42133019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 64
Target Start/End: Complemental strand, 44217746 - 44217688
Alignment:
Q  6 ttaattagaaacaaaaaatttctgtaaaagtgacagttataaagaaacggagggagtaa 64  Q
    |||| ||||||||||||||||||  |||||||||| ||| |||| ||||||| ||||||    
T  44217746 ttaaatagaaacaaaaaatttctccaaaagtgacacttaaaaaggaacggagagagtaa 44217688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 64
Target Start/End: Original strand, 55430507 - 55430565
Alignment:
Q  6 ttaattagaaacaaaaaatttctgtaaaagtgacagttataaagaaacggagggagtaa 64  Q
    |||||||||||||||   ||| || |||||||||| |||||||| ||||||||||||||    
T  55430507 ttaattagaaacaaattttttatgcaaaagtgacaattataaaggaacggagggagtaa 55430565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 63
Target Start/End: Original strand, 13629397 - 13629454
Alignment:
Q  6 ttaattagaaacaaaaaatttctgtaaaagtgacagttataaagaaacggagggagta 63  Q
    |||| ||| ||||||||||||||  |||||||||| ||| |||| |||||||||||||    
T  13629397 ttaaataggaacaaaaaatttctacaaaagtgacacttaaaaaggaacggagggagta 13629454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 63
Target Start/End: Complemental strand, 41813686 - 41813625
Alignment:
Q  2 acacttaattagaaacaaaaaatttctgtaaaagtgacagttataaagaaacggagggagta 63  Q
    ||||||||||||||||||||| ||| || |||||| ||| ||| |||| |||||||| ||||    
T  41813686 acacttaattagaaacaaaaattttatgcaaaagtaacaattaaaaaggaacggaggtagta 41813625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 63
Target Start/End: Complemental strand, 43888023 - 43887966
Alignment:
Q  6 ttaattagaaacaaaaaatttctgtaaaagtgacagttataaagaaacggagggagta 63  Q
    |||| ||| |||||||||||| | ||||||||||| ||| |||| |||||||||||||    
T  43888023 ttaaataggaacaaaaaatttatctaaaagtgacaattaaaaaggaacggagggagta 43887966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 63
Target Start/End: Complemental strand, 48782240 - 48782183
Alignment:
Q  6 ttaattagaaacaaaaaatttctgtaaaagtgacagttataaagaaacggagggagta 63  Q
    |||| ||| |||||||||||| |  |||||||||| ||| ||||||||||||||||||    
T  48782240 ttaaataggaacaaaaaatttatccaaaagtgacacttaaaaagaaacggagggagta 48782183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 63
Target Start/End: Complemental strand, 36292656 - 36292608
Alignment:
Q  15 aacaaaaaatttctgtaaaagtgacagttataaagaaacggagggagta 63  Q
    |||||||||||||| ||||||||| | ||| |||| |||||||||||||    
T  36292656 aacaaaaaatttctctaaaagtgagaattaaaaaggaacggagggagta 36292608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 38
Target Start/End: Original strand, 56499818 - 56499850
Alignment:
Q  6 ttaattagaaacaaaaaatttctgtaaaagtga 38  Q
    |||||||||||||||||||||||| ||||||||    
T  56499818 ttaattagaaacaaaaaatttctgcaaaagtga 56499850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 4e-22; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 2 - 63
Target Start/End: Original strand, 33947631 - 33947692
Alignment:
Q  2 acacttaattagaaacaaaaaatttctgtaaaagtgacagttataaagaaacggagggagta 63  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||    
T  33947631 acacttaattagaaacaaaaaatttctgtaaaagtgacagttataaaggaacggaggtagta 33947692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 2 - 48
Target Start/End: Complemental strand, 36173109 - 36173063
Alignment:
Q  2 acacttaattagaaacaaaaaatttctgtaaaagtgacagttataaa 48  Q
    |||||||||||||||||||||| || |||||||||||||||||||||    
T  36173109 acacttaattagaaacaaaaaaattatgtaaaagtgacagttataaa 36173063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 2 - 60
Target Start/End: Complemental strand, 42088935 - 42088877
Alignment:
Q  2 acacttaattagaaacaaaaaatttctgtaaaagtgacagttataaagaaacggaggga 60  Q
    ||||||||||||||||||| || || |||||||||||||||||||||  ||||||||||    
T  42088935 acacttaattagaaacaaagaaattatgtaaaagtgacagttataaaagaacggaggga 42088877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 6 - 63
Target Start/End: Original strand, 928237 - 928294
Alignment:
Q  6 ttaattagaaacaaaaaatttctgtaaaagtgacagttataaagaaacggagggagta 63  Q
    ||||||||||||||||| ||| || |||||||||| |||||||| |||||||||||||    
T  928237 ttaattagaaacaaaaattttatgcaaaagtgacaattataaaggaacggagggagta 928294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 15 - 64
Target Start/End: Original strand, 13849930 - 13849979
Alignment:
Q  15 aacaaaaaatttctgtaaaagtgacagttataaagaaacggagggagtaa 64  Q
    |||||||||||||| ||||||||||| ||| |||||||||||||||||||    
T  13849930 aacaaaaaatttctttaaaagtgacaattaaaaagaaacggagggagtaa 13849979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 67
Target Start/End: Complemental strand, 30544557 - 30544496
Alignment:
Q  6 ttaattagaaacaaaaaatttctgtaaaagtgacagttataaagaaacggagggagtaaatt 67  Q
    ||||||||||||||||||||| || |||||||||| ||| |||||||| | || ||||||||    
T  30544557 ttaattagaaacaaaaaatttatgcaaaagtgacaattaaaaagaaacaggggtagtaaatt 30544496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 63
Target Start/End: Original strand, 32854986 - 32855043
Alignment:
Q  6 ttaattagaaacaaaaaatttctgtaaaagtgacagttataaagaaacggagggagta 63  Q
    |||| ||| |||||||||||||| ||||||||||| |||||||  |||||||||||||    
T  32854986 ttaaataggaacaaaaaatttctctaaaagtgacaattataaatgaacggagggagta 32855043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 58
Target Start/End: Complemental strand, 37660181 - 37660129
Alignment:
Q  6 ttaattagaaacaaaaaatttctgtaaaagtgacagttataaagaaacggagg 58  Q
    |||||||||||||||||||||||| |||||||||| ||| |||  ||||||||    
T  37660181 ttaattagaaacaaaaaatttctgcaaaagtgacaattaaaaatgaacggagg 37660129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 65
Target Start/End: Complemental strand, 9370011 - 9369952
Alignment:
Q  6 ttaattagaaacaaaaaatttctgtaaaagtgacagttataaagaaacggagggagtaaa 65  Q
    |||| ||||||||||||||||||  |||| ||||| ||| |||||||| |||||||||||    
T  9370011 ttaaatagaaacaaaaaatttctccaaaaatgacaattaaaaagaaactgagggagtaaa 9369952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 61
Target Start/End: Original strand, 25558389 - 25558444
Alignment:
Q  6 ttaattagaaacaaaaaatttctgtaaaagtgacagttataaagaaacggagggag 61  Q
    |||| |||||||||||| |||||  |||||||||| ||| ||||||||||||||||    
T  25558389 ttaaatagaaacaaaaattttctccaaaagtgacacttaaaaagaaacggagggag 25558444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 45065114 - 45065051
Alignment:
Q  1 aacacttaattagaaacaaaaaatttctgtaaaagtgacagttataaagaaacggagggagtaa 64  Q
    |||||||||||||||||||||||  | || |||||||||| ||| |||  ||||||||||||||    
T  45065114 aacacttaattagaaacaaaaaaaatatgcaaaagtgacaattaaaaaagaacggagggagtaa 45065051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 64
Target Start/End: Complemental strand, 14288468 - 14288410
Alignment:
Q  6 ttaattagaaacaaaaaatttctgtaaaagtgacagttataaagaaacggagggagtaa 64  Q
    |||| ||| |||||||| |||||  |||||||||| ||| |||||||||||||||||||    
T  14288468 ttaaataggaacaaaaattttctccaaaagtgacacttaaaaagaaacggagggagtaa 14288410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 65
Target Start/End: Original strand, 18904117 - 18904172
Alignment:
Q  6 ttaattagaaacaaaaaatttctgtaaaagtgacagttataaagaaacggagggagtaaa 65  Q
    ||||||||||||||||| ||||| |||||||||| ||||||||    |||||||||||||    
T  18904117 ttaattagaaacaaaaattttctataaaagtgacggttataaa----cggagggagtaaa 18904172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 63
Target Start/End: Original strand, 11222522 - 11222579
Alignment:
Q  6 ttaattagaaacaaaaaatttctgtaaaagtgacagttataaagaaacggagggagta 63  Q
    |||| ||||||||||||||||||  ||||| |||| ||| |||| |||||||||||||    
T  11222522 ttaaatagaaacaaaaaatttcttcaaaagagacacttaaaaaggaacggagggagta 11222579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 63
Target Start/End: Original strand, 15183207 - 15183264
Alignment:
Q  6 ttaattagaaacaaaaaatttctgtaaaagtgacagttataaagaaacggagggagta 63  Q
    |||| ||||||||||||||||||  |||||||||| ||| |||| |||| ||||||||    
T  15183207 ttaaatagaaacaaaaaatttctcaaaaagtgacacttaaaaaggaacgaagggagta 15183264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 63
Target Start/End: Complemental strand, 19594388 - 19594331
Alignment:
Q  6 ttaattagaaacaaaaaatttctgtaaaagtgacagttataaagaaacggagggagta 63  Q
    |||| ||| ||||||||||||||  |||||||||| ||| |||| |||||||||||||    
T  19594388 ttaaataggaacaaaaaatttctcaaaaagtgacaattaaaaaggaacggagggagta 19594331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 63
Target Start/End: Original strand, 34884744 - 34884801
Alignment:
Q  6 ttaattagaaacaaaaaatttctgtaaaagtgacagttataaagaaacggagggagta 63  Q
    |||| ||| |||||||||||||| ||||||||||||||| |||| ||| |||| ||||    
T  34884744 ttaaataggaacaaaaaatttctctaaaagtgacagttaaaaaggaacagaggtagta 34884801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 59
Target Start/End: Original strand, 42263705 - 42263762
Alignment:
Q  2 acacttaattagaaacaaaaaatttctgtaaaagtgacagttataaagaaacggaggg 59  Q
    ||||||||||||||  ||||||| | |||||||||||| ||||||||| || ||||||    
T  42263705 acacttaattagaagaaaaaaatatatgtaaaagtgacggttataaaggaaaggaggg 42263762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 14284153 - 14284101
Alignment:
Q  18 aaaaaatttctgtaaaagtgacagttataaagaaacggagggagtaaattcta 70  Q
    |||||||||||  |||||||||| ||| ||||||||||| |||||| ||||||    
T  14284153 aaaaaatttcttcaaaagtgacacttaaaaagaaacggatggagtatattcta 14284101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 63
Target Start/End: Complemental strand, 32674239 - 32674191
Alignment:
Q  15 aacaaaaaatttctgtaaaagtgacagttataaagaaacggagggagta 63  Q
    ||||||||||||||  |||||||||| ||| |||| |||||||||||||    
T  32674239 aacaaaaaatttctccaaaagtgacacttaaaaaggaacggagggagta 32674191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 4e-22; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 2 - 63
Target Start/End: Complemental strand, 52759069 - 52759008
Alignment:
Q  2 acacttaattagaaacaaaaaatttctgtaaaagtgacagttataaagaaacggagggagta 63  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||    
T  52759069 acacttaattagaaacaaaaaatttctgtaaaagtgacagttataaaggaacggaggtagta 52759008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 6 - 64
Target Start/End: Complemental strand, 2571986 - 2571928
Alignment:
Q  6 ttaattagaaacaaaaaatttctgtaaaagtgacagttataaagaaacggagggagtaa 64  Q
    ||||||||||||||||||||| || |||||||||| |||||||| |||||| |||||||    
T  2571986 ttaattagaaacaaaaaatttatgcaaaagtgacaattataaaggaacggatggagtaa 2571928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 64
Target Start/End: Original strand, 21927905 - 21927954
Alignment:
Q  15 aacaaaaaatttctgtaaaagtgacagttataaagaaacggagggagtaa 64  Q
    ||||||||||||||| |||||||||| ||| |||| ||||||||||||||    
T  21927905 aacaaaaaatttctgcaaaagtgacacttaaaaaggaacggagggagtaa 21927954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 63
Target Start/End: Original strand, 32168512 - 32168569
Alignment:
Q  6 ttaattagaaacaaaaaatttctgtaaaagtgacagttataaagaaacggagggagta 63  Q
    |||| |||||||||||| ||||| ||||||||||| ||| |||| |||||||||||||    
T  32168512 ttaaatagaaacaaaaattttctctaaaagtgacaattaaaaaggaacggagggagta 32168569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 64
Target Start/End: Original strand, 19929666 - 19929724
Alignment:
Q  6 ttaattagaaacaaaaaatttctgtaaaagtgacagttataaagaaacggagggagtaa 64  Q
    |||| ||| ||||||||||||||  ||||| |||| ||| |||||||||||||||||||    
T  19929666 ttaaataggaacaaaaaatttctccaaaagagacacttaaaaagaaacggagggagtaa 19929724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 63
Target Start/End: Complemental strand, 1677253 - 1677196
Alignment:
Q  6 ttaattagaaacaaaaaatttctgtaaaagtgacagttataaagaaacggagggagta 63  Q
    |||| ||| ||||||||||||||  |||||||||| ||| |||| |||||||||||||    
T  1677253 ttaaataggaacaaaaaatttctccaaaagtgacacttaaaaaggaacggagggagta 1677196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 63
Target Start/End: Complemental strand, 18344367 - 18344306
Alignment:
Q  2 acacttaattagaaacaaaaaatttctgtaaaagtgacagttataaagaaacggagggagta 63  Q
    |||||||| | |||||||||| ||||  |||||| |||| ||| ||||||||||||||||||    
T  18344367 acacttaaattgaaacaaaaattttcgttaaaagagacacttaaaaagaaacggagggagta 18344306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 63
Target Start/End: Original strand, 31588939 - 31588996
Alignment:
Q  6 ttaattagaaacaaaaaatttctgtaaaagtgacagttataaagaaacggagggagta 63  Q
    |||| |||||||||||| ||||| ||||| ||||| ||| |||| |||||||||||||    
T  31588939 ttaaatagaaacaaaaattttctctaaaaatgacacttaaaaaggaacggagggagta 31588996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 63
Target Start/End: Complemental strand, 36318390 - 36318333
Alignment:
Q  6 ttaattagaaacaaaaaatttctgtaaaagtgacagttataaagaaacggagggagta 63  Q
    |||| |||||||||||||||| | ||||||||||| ||| |||| |||||||| ||||    
T  36318390 ttaaatagaaacaaaaaatttatctaaaagtgacacttaaaaaggaacggaggaagta 36318333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 63
Target Start/End: Original strand, 49908382 - 49908439
Alignment:
Q  6 ttaattagaaacaaaaaatttctgtaaaagtgacagttataaagaaacggagggagta 63  Q
    |||| |||||||||||  ||||| ||||||||||| ||| |||| |||||||||||||    
T  49908382 ttaaatagaaacaaaatttttctttaaaagtgacacttaaaaaggaacggagggagta 49908439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 63
Target Start/End: Complemental strand, 10630423 - 10630391
Alignment:
Q  31 aaaagtgacagttataaagaaacggagggagta 63  Q
    |||||||||| ||||||||||||||||||||||    
T  10630423 aaaagtgacaattataaagaaacggagggagta 10630391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 63
Target Start/End: Complemental strand, 52749045 - 52748997
Alignment:
Q  15 aacaaaaaatttctgtaaaagtgacagttataaagaaacggagggagta 63  Q
    ||||||||||||||  |||| ||||| ||| ||||||||||||||||||    
T  52749045 aacaaaaaatttcttcaaaaatgacatttaaaaagaaacggagggagta 52748997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 9e-20; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 2 - 63
Target Start/End: Complemental strand, 6660994 - 6660933
Alignment:
Q  2 acacttaattagaaacaaaaaatttctgtaaaagtgacagttataaagaaacggagggagta 63  Q
    |||||||||||||||||||||| || |||||||||||||||||||||| |||||||||||||    
T  6660994 acacttaattagaaacaaaaaaattatgtaaaagtgacagttataaaggaacggagggagta 6660933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 2 - 63
Target Start/End: Complemental strand, 6741396 - 6741335
Alignment:
Q  2 acacttaattagaaacaaaaaatttctgtaaaagtgacagttataaagaaacggagggagta 63  Q
    |||||||||||||||||||||| || |||||||||||||||||||||| |||||||||||||    
T  6741396 acacttaattagaaacaaaaaaattatgtaaaagtgacagttataaaggaacggagggagta 6741335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 6 - 63
Target Start/End: Original strand, 13132319 - 13132376
Alignment:
Q  6 ttaattagaaacaaaaaatttctgtaaaagtgacagttataaagaaacggagggagta 63  Q
    |||||||||||||||||| ||||||||||||||||||||||||| ||||||| |||||    
T  13132319 ttaattagaaacaaaaaaattctgtaaaagtgacagttataaaggaacggagcgagta 13132376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 6 - 63
Target Start/End: Complemental strand, 45317689 - 45317632
Alignment:
Q  6 ttaattagaaacaaaaaatttctgtaaaagtgacagttataaagaaacggagggagta 63  Q
    |||||| ||||||||||| ||||||||||||||||||||||||| |||||||||||||    
T  45317689 ttaattggaaacaaaaaaattctgtaaaagtgacagttataaaggaacggagggagta 45317632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 2 - 64
Target Start/End: Complemental strand, 30205501 - 30205439
Alignment:
Q  2 acacttaattagaaacaaaaaatttctgtaaaagtgacagttataaagaaacggagggagtaa 64  Q
    ||||||||||||||| |||||| || |||||||||||||||||||||| ||||| ||||||||    
T  30205501 acacttaattagaaataaaaaaattatgtaaaagtgacagttataaaggaacggggggagtaa 30205439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 2 - 55
Target Start/End: Complemental strand, 40608076 - 40608022
Alignment:
Q  2 acacttaattagaaacaaaaaatttc-tgtaaaagtgacagttataaagaaacgg 55  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||| |||||    
T  40608076 acacttaattagaaacaaaaaatttcctgtaaaagtgacagttataaaggaacgg 40608022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 6 - 63
Target Start/End: Complemental strand, 34046888 - 34046831
Alignment:
Q  6 ttaattagaaacaaaaaatttctgtaaaagtgacagttataaagaaacggagggagta 63  Q
    |||| |||||||||||||||||| ||||||||||| ||| |||| |||||||||||||    
T  34046888 ttaaatagaaacaaaaaatttctctaaaagtgacacttaaaaaggaacggagggagta 34046831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 58
Target Start/End: Complemental strand, 38074313 - 38074261
Alignment:
Q  6 ttaattagaaacaaaaaatttctgtaaaagtgacagttataaagaaacggagg 58  Q
    |||||||||||||||||||||||  |||||||||| ||| |||| ||||||||    
T  38074313 ttaattagaaacaaaaaatttctacaaaagtgacaattaaaaaggaacggagg 38074261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 8954897 - 8954960
Alignment:
Q  1 aacacttaattagaaacaaaaaatttctgtaaaagtgacagttataaagaaacggagggagtaa 64  Q
    |||| |||||||||||||||||| ||||  |||| ||||| ||| ||||||||||| |||||||    
T  8954897 aacagttaattagaaacaaaaaaattctacaaaaatgacaattaaaaagaaacggaaggagtaa 8954960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 31760225 - 31760287
Alignment:
Q  1 aacacttaattagaaacaaaaaatttctgtaaaagtgacagttataaagaaacggagggagtaa 64  Q
    |||||||||||||||||||||||| ||| ||||||||| ||||| |||| | |||||| |||||    
T  31760225 aacacttaattagaaacaaaaaatatctataaaagtga-agttacaaaggagcggaggtagtaa 31760287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 63
Target Start/End: Complemental strand, 11163303 - 11163246
Alignment:
Q  6 ttaattagaaacaaaaaatttctgtaaaagtgacagttataaagaaacggagggagta 63  Q
    |||||||||||||||||| || || |||||||||| ||| |||| ||| |||||||||    
T  11163303 ttaattagaaacaaaaaaattatgcaaaagtgacaattaaaaaggaacagagggagta 11163246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 63
Target Start/End: Complemental strand, 31028683 - 31028634
Alignment:
Q  14 aaacaaaaaatttctgtaaaagtgacagttataaagaaacggagggagta 63  Q
    ||||||||| ||||  ||||||||||| |||||||||||||||| |||||    
T  31028683 aaacaaaaattttccctaaaagtgacaattataaagaaacggagagagta 31028634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 55
Target Start/End: Complemental strand, 41890559 - 41890510
Alignment:
Q  6 ttaattagaaacaaaaaatttctgtaaaagtgacagttataaagaaacgg 55  Q
    ||||||||||||||||||||| || |||||||||| ||| |||| |||||    
T  41890559 ttaattagaaacaaaaaatttatgcaaaagtgacaattaaaaaggaacgg 41890510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 9e-20; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 6 - 63
Target Start/End: Complemental strand, 35077424 - 35077367
Alignment:
Q  6 ttaattagaaacaaaaaatttctgtaaaagtgacagttataaagaaacggagggagta 63  Q
    |||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||    
T  35077424 ttaattagaaacaaaaaaattctgtaaaagtgacagttataaaggaacggagggagta 35077367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 6 - 63
Target Start/End: Original strand, 47844047 - 47844104
Alignment:
Q  6 ttaattagaaacaaaaaatttctgtaaaagtgacagttataaagaaacggagggagta 63  Q
    ||||||||||| ||||||||| |||||||||||||||||||||| |||||||||||||    
T  47844047 ttaattagaaataaaaaatttatgtaaaagtgacagttataaaggaacggagggagta 47844104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 24569592 - 24569530
Alignment:
Q  1 aacacttaattagaaacaaaaaatttctgtaaaagtgacagttataaagaaacggagggagta 63  Q
    |||| |||||||||||||||||| || |||||||| |||| ||||||||||||||||||||||    
T  24569592 aacaattaattagaaacaaaaaaattatgtaaaagcgacaattataaagaaacggagggagta 24569530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 2 - 63
Target Start/End: Original strand, 53290966 - 53291027
Alignment:
Q  2 acacttaattagaaacaaaaaatttctgtaaaagtgacagttataaagaaacggagggagta 63  Q
    ||||||||||| |||||||||| || ||||| |||||||||||||||| |||||||||||||    
T  53290966 acacttaattaaaaacaaaaaaattatgtaagagtgacagttataaaggaacggagggagta 53291027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 6 - 57
Target Start/End: Complemental strand, 28226464 - 28226413
Alignment:
Q  6 ttaattagaaacaaaaaatttctgtaaaagtgacagttataaagaaacggag 57  Q
    ||||||||||||||||||||| |||||||| ||||||||||||| |||||||    
T  28226464 ttaattagaaacaaaaaatttatgtaaaagcgacagttataaaggaacggag 28226413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 6 - 66
Target Start/End: Original strand, 47104364 - 47104424
Alignment:
Q  6 ttaattagaaacaaaaaatttctgtaaaagtgacagttataaagaaacggagggagtaaat 66  Q
    |||| ||| |||||||||||||| ||||||||||| ||| |||| ||||||||||||||||    
T  47104364 ttaaataggaacaaaaaatttctctaaaagtgacaattaaaaaggaacggagggagtaaat 47104424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 64
Target Start/End: Original strand, 32853543 - 32853590
Alignment:
Q  17 caaaaaatttctgtaaaagtgacagttataaagaaacggagggagtaa 64  Q
    |||||||||||| ||||||| ||| ||| |||||||||||||||||||    
T  32853543 caaaaaatttctctaaaagtaacaattaaaaagaaacggagggagtaa 32853590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 64
Target Start/End: Complemental strand, 1201100 - 1201042
Alignment:
Q  6 ttaattagaaacaaaaaatttctgtaaaagtgacagttataaagaaacggagggagtaa 64  Q
    |||||||||||||||||| || || ||| |||||| ||| |||| ||||||||||||||    
T  1201100 ttaattagaaacaaaaaaattatgcaaatgtgacaattaaaaaggaacggagggagtaa 1201042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 64
Target Start/End: Complemental strand, 2642747 - 2642689
Alignment:
Q  6 ttaattagaaacaaaaaatttctgtaaaagtgacagttataaagaaacggagggagtaa 64  Q
    ||||||||||||||||||||| || ||| |||||| ||| |||| |||||||| |||||    
T  2642747 ttaattagaaacaaaaaatttatgcaaatgtgacaattaaaaaggaacggaggaagtaa 2642689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 64
Target Start/End: Original strand, 33874755 - 33874813
Alignment:
Q  6 ttaattagaaacaaaaaatttctgtaaaagtgacagttataaagaaacggagggagtaa 64  Q
    |||| ||| |||||||||||||| |||||||||||| || |||| ||||| ||||||||    
T  33874755 ttaaataggaacaaaaaatttctctaaaagtgacagataaaaaggaacggtgggagtaa 33874813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 63
Target Start/End: Complemental strand, 23771324 - 23771267
Alignment:
Q  6 ttaattagaaacaaaaaatttctgtaaaagtgacagttataaagaaacggagggagta 63  Q
    ||||||||||||||||| ||| || |||||||||| ||| |||| |||||||| ||||    
T  23771324 ttaattagaaacaaaaattttatgcaaaagtgacaattaaaaaggaacggaggaagta 23771267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 63
Target Start/End: Complemental strand, 34750692 - 34750635
Alignment:
Q  6 ttaattagaaacaaaaaatttctgtaaaagtgacagttataaagaaacggagggagta 63  Q
    ||||||||||||||||  ||| || |||||||||| |||||||| |||||| ||||||    
T  34750692 ttaattagaaacaaaatttttatgcaaaagtgacaattataaaggaacggaaggagta 34750635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 63
Target Start/End: Original strand, 53745490 - 53745547
Alignment:
Q  6 ttaattagaaacaaaaaatttctgtaaaagtgacagttataaagaaacggagggagta 63  Q
    |||| ||| ||||||||||||||  |||||||||| ||| |||| |||||||||||||    
T  53745490 ttaaataggaacaaaaaatttctccaaaagtgacacttaaaaaggaacggagggagta 53745547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 1e-18; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 6 - 65
Target Start/End: Original strand, 13957360 - 13957419
Alignment:
Q  6 ttaattagaaacaaaaaatttctgtaaaagtgacagttataaagaaacggagggagtaaa 65  Q
    |||||| ||||||||||| ||||||||||||||||||||||||| |||||||||||||||    
T  13957360 ttaattggaaacaaaaaaattctgtaaaagtgacagttataaaggaacggagggagtaaa 13957419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 6 - 63
Target Start/End: Complemental strand, 4440108 - 4440053
Alignment:
Q  6 ttaattagaaacaaaaaatttctgtaaaagtgacagttataaagaaacggagggagta 63  Q
    ||||||||||||||||||   ||||||||||||||||||||||| |||||||||||||    
T  4440108 ttaattagaaacaaaaaaa--ctgtaaaagtgacagttataaaggaacggagggagta 4440053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 63
Target Start/End: Original strand, 7579868 - 7579925
Alignment:
Q  6 ttaattagaaacaaaaaatttctgtaaaagtgacagttataaagaaacggagggagta 63  Q
    |||| ||||||||||||||||||  |||||||||| ||| |||| |||||||||||||    
T  7579868 ttaaatagaaacaaaaaatttctccaaaagtgacacttaaaaaggaacggagggagta 7579925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 63
Target Start/End: Original strand, 10359435 - 10359492
Alignment:
Q  6 ttaattagaaacaaaaaatttctgtaaaagtgacagttataaagaaacggagggagta 63  Q
    |||| |||||||||||| |||||  |||||| |||||||||||||||||||| |||||    
T  10359435 ttaaatagaaacaaaaattttctccaaaagttacagttataaagaaacggagagagta 10359492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 58
Target Start/End: Complemental strand, 21150511 - 21150459
Alignment:
Q  6 ttaattagaaacaaaaaatttctgtaaaagtgacagttataaagaaacggagg 58  Q
    ||||||||||||||||||||| || |||||||||| ||| |||| ||||||||    
T  21150511 ttaattagaaacaaaaaatttatgcaaaagtgacaattaaaaaggaacggagg 21150459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 64
Target Start/End: Original strand, 28463593 - 28463643
Alignment:
Q  14 aaacaaaaaatttctgtaaaagtgacagttataaagaaacggagggagtaa 64  Q
    |||||||||||||||  |||||||||| ||| |||| ||||||||||||||    
T  28463593 aaacaaaaaatttctccaaaagtgacacttaaaaaggaacggagggagtaa 28463643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 64
Target Start/End: Complemental strand, 36481098 - 36481037
Alignment:
Q  2 acacttaattagaaacaaaaaatttctgtaaaagtgacagttataaagaaacggagggagtaa 64  Q
    |||||||||||||||||||||| || | ||||| |||||  ||||||| ||||||||||||||    
T  36481098 acacttaattagaaacaaaaaaattatataaaa-tgacatgtataaaggaacggagggagtaa 36481037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 63
Target Start/End: Complemental strand, 4609047 - 4608986
Alignment:
Q  2 acacttaattagaaacaaaaaatttctgtaaaagtgacagttataaagaaacggagggagta 63  Q
    ||||||||||| |||||||||| || || |||||||||| ||| |||| || ||||||||||    
T  4609047 acacttaattaaaaacaaaaaaattatgcaaaagtgacaattaaaaaggaatggagggagta 4608986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 63
Target Start/End: Original strand, 5144194 - 5144255
Alignment:
Q  2 acacttaattagaaacaaaaaatttctgtaaaagtgacagttataaagaaacggagggagta 63  Q
    |||||||| ||| ||||||||||||||  |||| ||||| ||| |||| |||||||||||||    
T  5144194 acacttaaataggaacaaaaaatttctccaaaaatgacaattaaaaaggaacggagggagta 5144255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 63
Target Start/End: Complemental strand, 6007902 - 6007845
Alignment:
Q  6 ttaattagaaacaaaaaatttctgtaaaagtgacagttataaagaaacggagggagta 63  Q
    |||| ||||||||||||||||||  |||||||||| ||| |||| |||||| ||||||    
T  6007902 ttaaatagaaacaaaaaatttctccaaaagtgacacttaaaaaggaacggatggagta 6007845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 63
Target Start/End: Original strand, 18437519 - 18437580
Alignment:
Q  2 acacttaattagaaacaaaaaatttctgtaaaagtgacagttataaagaaacggagggagta 63  Q
    |||||||| | ||||||||||||||||  ||||| |||| ||| |||||||| |||||||||    
T  18437519 acacttaaattgaaacaaaaaatttcttcaaaagagacacttaaaaagaaacagagggagta 18437580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 63
Target Start/End: Complemental strand, 18794802 - 18794745
Alignment:
Q  6 ttaattagaaacaaaaaatttctgtaaaagtgacagttataaagaaacggagggagta 63  Q
    |||| ||||||||||||||||||  |||||||||| ||| |||| || ||||||||||    
T  18794802 ttaaatagaaacaaaaaatttctccaaaagtgacacttaaaaaggaatggagggagta 18794745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 63
Target Start/End: Complemental strand, 25785926 - 25785869
Alignment:
Q  6 ttaattagaaacaaaaaatttctgtaaaagtgacagttataaagaaacggagggagta 63  Q
    |||||||||||| ||||||||||| | |||||||| ||| |||| |||||||| ||||    
T  25785926 ttaattagaaactaaaaatttctgcagaagtgacaattaaaaaggaacggaggtagta 25785869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 63
Target Start/End: Complemental strand, 40927172 - 40927115
Alignment:
Q  6 ttaattagaaacaaaaaatttctgtaaaagtgacagttataaagaaacggagggagta 63  Q
    ||||||||||||||||  ||| || |||||||||| |||||||| |||||| ||||||    
T  40927172 ttaattagaaacaaaatttttatgcaaaagtgacaattataaaggaacggatggagta 40927115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 63
Target Start/End: Original strand, 42394328 - 42394385
Alignment:
Q  6 ttaattagaaacaaaaaatttctgtaaaagtgacagttataaagaaacggagggagta 63  Q
    |||| ||| ||||||||||||||  |||||||||| ||| |||| |||||||||||||    
T  42394328 ttaaataggaacaaaaaatttcttcaaaagtgacacttaaaaaggaacggagggagta 42394385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 63
Target Start/End: Original strand, 1795326 - 1795374
Alignment:
Q  15 aacaaaaaatttctgtaaaagtgacagttataaagaaacggagggagta 63  Q
    ||||||||||||||  |||||||||| ||| |||| |||||||||||||    
T  1795326 aacaaaaaatttctccaaaagtgacacttaaaaaggaacggagggagta 1795374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 63
Target Start/End: Original strand, 18676614 - 18676670
Alignment:
Q  7 taattagaaacaaaaaatttctgtaaaagtgacagttataaagaaacggagggagta 63  Q
    |||||| ||||||||||||| || |||||||||| ||| |||| |||||||| ||||    
T  18676614 taattaaaaacaaaaaatttatgcaaaagtgacaattaaaaaggaacggaggaagta 18676670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 58
Target Start/End: Complemental strand, 21157652 - 21157600
Alignment:
Q  6 ttaattagaaacaaaaaatttctgtaaaagtgacagttataaagaaacggagg 58  Q
    ||||||||||||||||| ||| || |||||||||| ||| |||| ||||||||    
T  21157652 ttaattagaaacaaaaattttatgcaaaagtgacaattaaaaaggaacggagg 21157600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 70
Target Start/End: Complemental strand, 25343979 - 25343915
Alignment:
Q  6 ttaattagaaacaaaaaatttctgtaaaagtgacagttataaagaaacggagggagtaaattcta 70  Q
    |||| |||||||||||| |||||  |||||||||| ||| |||| |||||| |||||| ||||||    
T  25343979 ttaaatagaaacaaaaattttctccaaaagtgacacttacaaaggaacggaaggagtatattcta 25343915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 6 - 64
Target Start/End: Complemental strand, 33071943 - 33071886
Alignment:
Q  6 ttaattagaaacaaaaaatttctgtaaaagtgacagttataaagaaacggagggagtaa 64  Q
    |||||||||||||||||| ||||||||||||||||||||||||| ||||| ||||||||    
T  33071943 ttaattagaaacaaaaaaattctgtaaaagtgacagttataaaggaacgg-gggagtaa 33071886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 6 - 63
Target Start/End: Complemental strand, 3177967 - 3177910
Alignment:
Q  6 ttaattagaaacaaaaaatttctgtaaaagtgacagttataaagaaacggagggagta 63  Q
    |||||||||||||||||| |||||||||||||||| ||| |||| |||||||||||||    
T  3177967 ttaattagaaacaaaaaaattctgtaaaagtgacaattaaaaaggaacggagggagta 3177910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 6 - 63
Target Start/End: Complemental strand, 8921083 - 8921026
Alignment:
Q  6 ttaattagaaacaaaaaatttctgtaaaagtgacagttataaagaaacggagggagta 63  Q
    |||||||||||||||||| || |||||||| ||||||||||||| |||||||||||||    
T  8921083 ttaattagaaacaaaaaaattatgtaaaagcgacagttataaaggaacggagggagta 8921026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 2 - 63
Target Start/End: Original strand, 9602095 - 9602156
Alignment:
Q  2 acacttaattagaaacaaaaaatttctgtaaaagtgacagttataaagaaacggagggagta 63  Q
    |||||||||||||||||||||| || |||||||||||| | ||||||| |||||||||||||    
T  9602095 acacttaattagaaacaaaaaaattatgtaaaagtgacgggtataaaggaacggagggagta 9602156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 2 - 63
Target Start/End: Original strand, 9829666 - 9829727
Alignment:
Q  2 acacttaattagaaacaaaaaatttctgtaaaagtgacagttataaagaaacggagggagta 63  Q
    |||||||||||||||||||||| || |||||||||||| | ||||||| |||||||||||||    
T  9829666 acacttaattagaaacaaaaaaattatgtaaaagtgacgggtataaaggaacggagggagta 9829727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 63
Target Start/End: Original strand, 46563329 - 46563386
Alignment:
Q  6 ttaattagaaacaaaaaatttctgtaaaagtgacagttataaagaaacggagggagta 63  Q
    ||||||| |||||||||||||||| |||||||||| ||| |||| |||||||| ||||    
T  46563329 ttaattataaacaaaaaatttctgcaaaagtgacaattaaaaaggaacggaggtagta 46563386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 63
Target Start/End: Original strand, 48981587 - 48981643
Alignment:
Q  7 taattagaaacaaaaaatttctgtaaaagtgacagttataaagaaacggagggagta 63  Q
    ||||||||||||||||| ||||| |||||||||| ||| |||| ||||||| |||||    
T  48981587 taattagaaacaaaaaaattctgcaaaagtgacaattaaaaaggaacggagagagta 48981643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 65
Target Start/End: Complemental strand, 18470335 - 18470285
Alignment:
Q  15 aacaaaaaatttctgtaaaagtgacagttataaagaaacggagggagtaaa 65  Q
    ||||||||||||||  |||||||||| ||| |||| |||||||||||||||    
T  18470335 aacaaaaaatttctccaaaagtgacacttaaaaaggaacggagggagtaaa 18470285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 63
Target Start/End: Complemental strand, 35860008 - 35859946
Alignment:
Q  2 acacttaattagaa-acaaaaaatttctgtaaaagtgacagttataaagaaacggagggagta 63  Q
    |||||||||||||| | |||||| || ||||||| |||||||||||||| |||||| ||||||    
T  35860008 acacttaattagaagaaaaaaaaattatgtaaaaatgacagttataaaggaacggatggagta 35859946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 64
Target Start/End: Original strand, 42842072 - 42842130
Alignment:
Q  6 ttaattagaaacaaaaaatttctgtaaaagtgacagttataaagaaacggagggagtaa 64  Q
    |||| ||| |||||||||||||| ||||||||||| ||| |||| |||||| |||||||    
T  42842072 ttaaataggaacaaaaaatttctctaaaagtgacaattaaaaaggaacggatggagtaa 42842130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 63
Target Start/End: Original strand, 8966106 - 8966163
Alignment:
Q  6 ttaattagaaacaaaaaatttctgtaaaagtgacagttataaagaaacggagggagta 63  Q
    ||||||||||||||||  ||| || |||||||||| ||| |||| |||||||||||||    
T  8966106 ttaattagaaacaaaatttttatgcaaaagtgacaattaaaaaggaacggagggagta 8966163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 63
Target Start/End: Complemental strand, 20035085 - 20035028
Alignment:
Q  6 ttaattagaaacaaaaaatttctgtaaaagtgacagttataaagaaacggagggagta 63  Q
    |||| ||| ||||||||||||||| |||||||||| ||| |||| |||||| ||||||    
T  20035085 ttaaataggaacaaaaaatttctgcaaaagtgacacttaaaaaggaacggatggagta 20035028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 63
Target Start/End: Complemental strand, 20045496 - 20045439
Alignment:
Q  6 ttaattagaaacaaaaaatttctgtaaaagtgacagttataaagaaacggagggagta 63  Q
    |||| ||| ||||||||||||||| |||||||||| ||| |||| |||||| ||||||    
T  20045496 ttaaataggaacaaaaaatttctgcaaaagtgacacttaaaaaggaacggatggagta 20045439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 63
Target Start/End: Original strand, 30586882 - 30586939
Alignment:
Q  6 ttaattagaaacaaaaaatttctgtaaaagtgacagttataaagaaacggagggagta 63  Q
    |||||| |||||||||||||| || |||||||||| |||||||  | |||||||||||    
T  30586882 ttaattggaaacaaaaaatttatgcaaaagtgacaattataaaagagcggagggagta 30586939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 63
Target Start/End: Complemental strand, 31430596 - 31430539
Alignment:
Q  6 ttaattagaaacaaaaaatttctgtaaaagtgacagttataaagaaacggagggagta 63  Q
    |||| ||| ||||||||||||||  |||||||||| ||| |||| |||||||||||||    
T  31430596 ttaaataggaacaaaaaatttctacaaaagtgacacttaaaaaggaacggagggagta 31430539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 64
Target Start/End: Original strand, 41889532 - 41889581
Alignment:
Q  15 aacaaaaaatttctgtaaaagtgacagttataaagaaacggagggagtaa 64  Q
    ||||||||| |||| ||||||||||| ||| ||||||||||| |||||||    
T  41889532 aacaaaaaaattctttaaaagtgacacttaaaaagaaacggatggagtaa 41889581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 63
Target Start/End: Original strand, 43874288 - 43874345
Alignment:
Q  6 ttaattagaaacaaaaaatttctgtaaaagtgacagttataaagaaacggagggagta 63  Q
    |||| ||| ||||||||| |||| ||||||||||| ||| ||||||||||| ||||||    
T  43874288 ttaaataggaacaaaaaaattctctaaaagtgacacttaaaaagaaacggatggagta 43874345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 63
Target Start/End: Complemental strand, 47408175 - 47408118
Alignment:
Q  6 ttaattagaaacaaaaaatttctgtaaaagtgacagttataaagaaacggagggagta 63  Q
    |||| ||| ||||||||||||||  |||||||||| ||| |||| |||||||||||||    
T  47408175 ttaaataggaacaaaaaatttctccaaaagtgacacttaaaaaggaacggagggagta 47408118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 63
Target Start/End: Original strand, 41675401 - 41675449
Alignment:
Q  15 aacaaaaaatttctgtaaaagtgacagttataaagaaacggagggagta 63  Q
    |||||||| |||||| |||||||||| ||| |||| |||||||||||||    
T  41675401 aacaaaaattttctgcaaaagtgacacttaaaaaggaacggagggagta 41675449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 63
Target Start/End: Complemental strand, 252631 - 252574
Alignment:
Q  6 ttaattagaaacaaaaaatttctgtaaaagtgacagttataaagaaacggagggagta 63  Q
    |||||||||||||||||| || || |||||||||| ||| |||| |||||||||||||    
T  252631 ttaattagaaacaaaaaaattatgcaaaagtgacaattaaaaaggaacggagggagta 252574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 61
Target Start/End: Original strand, 147341 - 147387
Alignment:
Q  15 aacaaaaaatttctgtaaaagtgacagttataaagaaacggagggag 61  Q
    |||||||||||||| ||||||||||| ||| |||| |||||||||||    
T  147341 aacaaaaaatttctctaaaagtgacaattaaaaaggaacggagggag 147387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 63
Target Start/End: Complemental strand, 69137 - 69080
Alignment:
Q  6 ttaattagaaacaaaaaatttctgtaaaagtgacagttataaagaaacggagggagta 63  Q
    |||| ||| |||||||| |||||  |||||||||| ||| ||||||||||||||||||    
T  69137 ttaaataggaacaaaaattttcttcaaaagtgacacttaaaaagaaacggagggagta 69080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 59
Target Start/End: Original strand, 492540 - 492597
Alignment:
Q  2 acacttaattagaaacaaaaaatttctgtaaaagtgacagttataaagaaacggaggg 59  Q
    ||||||||||||||  ||||||| | |||||||||||| ||||||||| || ||||||    
T  492540 acacttaattagaagaaaaaaatatatgtaaaagtgacggttataaaggaaaggaggg 492597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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