View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2510_high_5 (Length: 402)
Name: NF2510_high_5
Description: NF2510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2510_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 66 - 316
Target Start/End: Original strand, 2117794 - 2118045
Alignment:
| Q |
66 |
catcgacataagggcacctagcgcaaagtctcatgcaccccgcataagccacaaccccgagattcgtgaaatcacccataacgtgttactcggtcccctt |
165 |
Q |
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| T |
2117794 |
catcgacataagggcacctagcgcaaagtctcatgcgccccgcataagccacaaccccgagattcgtgaaatcacccataatgtgttgctcggtcccctt |
2117893 |
T |
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| Q |
166 |
tcacatgcataatgccttggacaatagcgcgtgcatatccaaaatttgtccaagaagactaaaagtttgttataacaatattttttgtgaacggctaaaa |
265 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2117894 |
tcacatgcataatgccttggacaatagcgcgtgcatatccaaaatttgtcctagaagactaaaagtttgttataacaatattttttgtgaacggctaaaa |
2117993 |
T |
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| Q |
266 |
gaagagatctat-nnnnnnnncatgagtataagggtactcaaacccattatg |
316 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
2117994 |
gaagagatctataaaaaaaaacatgagtataagggtactcaaacccattatg |
2118045 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 2117706 - 2117795
Alignment:
| Q |
1 |
ctatcgctactaaaagttgccttccatgctcctagagccccaaatcatgtgcccaacgcaaacctcatcgacataagggcacctagcgca |
90 |
Q |
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||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2117706 |
ctatcactactaaaagttgccttccatgctcctagagcctcaaatcatgtgcccaacgcaaacctcatcgacataagggcacctagcgca |
2117795 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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