View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2510_high_6 (Length: 400)
Name: NF2510_high_6
Description: NF2510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2510_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 324; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 12 - 382
Target Start/End: Complemental strand, 32508430 - 32508058
Alignment:
| Q |
12 |
atgaatatttaggtgtcaagcattaagtttgcgaa-ttatttttactaaaggattgtttaattggttctagaatttcatgcacactccgcactttatctg |
110 |
Q |
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| T |
32508430 |
atgaatatttaggtgtcaagcattaagtttgtgaaattatttttactaaaggattgtttaattggttctagaatttcatgcacactccgcactttatctg |
32508331 |
T |
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| Q |
111 |
tttgatcaccaatcattgttatgatcaatatgtcatagagcttgttgcattttgattttattaataatgaagttagcaatacaagagggtgcatggataa |
210 |
Q |
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| T |
32508330 |
tttgatcaccaatcattgttatgatcaatatgtcatagagcttgttgcattttgattttattaataatgaagttagcaatacaagagggtgcatggataa |
32508231 |
T |
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| Q |
211 |
aatatgacgactaggtataaattgtgttgctctagctaaatcatgagtcacagtcacaccattgatttgtcttctaataaaattcaaactaaagtttgga |
310 |
Q |
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| T |
32508230 |
aatatgaggactaggtataaattgtgttgctctagctaaatcatgagtcacagtcacaccattgatttgtcttctaatgaaattcaaactaaagtttgga |
32508131 |
T |
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| Q |
311 |
gg-nnnnnnngaataagtataccataaaatacagaaggttcaccaaatgtaatgaatctaatgatgcacaatc |
382 |
Q |
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| T |
32508130 |
ggaaaaaaaagaataagtataccataaaatacagaaggttcaccaaatgtaatgaatctaatgatgcacaatc |
32508058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 165 - 308
Target Start/End: Complemental strand, 21903245 - 21903106
Alignment:
| Q |
165 |
attttattaataatgaagttagcaatacaagagggtgcatggataaaatatgacgactaggtataaattgtgttgctctagctaaatcatgagtcacagt |
264 |
Q |
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| T |
21903245 |
attttattaataataaagtgagcaatacaagagggtgcatggataaaatatgaggcctagctataaattgtgttgctatagctaaatcatgagt----ga |
21903150 |
T |
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| Q |
265 |
cacaccattgatttgtcttctaataaaattcaaactaaagtttg |
308 |
Q |
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| T |
21903149 |
cacaccattgatttgtcttctaatgaaattcaaactaaagtttg |
21903106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 45 - 150
Target Start/End: Complemental strand, 32512949 - 32512844
Alignment:
| Q |
45 |
aattatttttactaaaggattgtttaattggttctagaatttcatgcacactccgcactttatctgtttgatcaccaatcattgttatgatcaatatgtc |
144 |
Q |
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| T |
32512949 |
aattaattgtactaaaggattgtttaattggttctagaatttcatgcatgctactcactttatctgtttgataacccatccttgttaagatcaatatttc |
32512850 |
T |
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| Q |
145 |
atagag |
150 |
Q |
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|||||| |
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| T |
32512849 |
atagag |
32512844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 12 - 106
Target Start/End: Complemental strand, 21903447 - 21903352
Alignment:
| Q |
12 |
atgaatatttaggtgtcaagcattaagtttgcgaa-ttatttttactaaaggattgtttaattggttctagaatttcatgcacactccgcacttta |
106 |
Q |
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||||||||| ||||||||||||| ||| || ||| |||||| |||||||||||||||||||||||||||||||||||| ||| |||| ||||||| |
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| T |
21903447 |
atgaatattcaggtgtcaagcataaagcttatgaaattatttgtactaaaggattgtttaattggttctagaatttcatacacgctcctcacttta |
21903352 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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