View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2510_low_1 (Length: 969)
Name: NF2510_low_1
Description: NF2510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2510_low_1 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 711; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 711; E-Value: 0
Query Start/End: Original strand, 215 - 969
Target Start/End: Complemental strand, 32494388 - 32493634
Alignment:
| Q |
215 |
cacgagtaaatccaacttggcctctttatggctagaactaatttttaagttttaacttatataaatagacctaacaagatcatgaatttgccgttttttg |
314 |
Q |
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| T |
32494388 |
cacgagtaaatccaacttggcctctttatggctagaactaatttttaagttttaacttatataaatagacctaacaagatcatgaatttgccattttttg |
32494289 |
T |
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| Q |
315 |
atttccttattggttttgcaggcagttgtgacagaggaggatgggatggagtcaatagctcatagatttctttctgctgctgtcaaggtacaattccacc |
414 |
Q |
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| T |
32494288 |
attgccttattggttttgcaggcaattgtgacagaggaggatgggatggagtcaatagctcatagatttctttctgctgctgtcaaggtacaattccacc |
32494189 |
T |
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| Q |
415 |
tgtatattgcatgttgatgaaatataactgtcttcgaatgattattattttattatcactatgtattacagtataggataattacatttgggcaacaatg |
514 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
32494188 |
tgtatattgcatgttgatgaaatataactgtcttcgaatgattattattttattatcactatttattacagtataggataattacatttgggcaacaatg |
32494089 |
T |
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| Q |
515 |
cagttctactaaagtagtaaatagcaatgtgttttgaaagtaaaaatattagtctcctatgtagtaatgatgaaacatagagtcgtattctattcttgta |
614 |
Q |
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||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
32494088 |
cagttctactaaattagtaaatagcaatgtgttctgaaagtaaaaatattagtctcctatgtagtaatgatgaaacataaagtcgtattctattcttgta |
32493989 |
T |
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| Q |
615 |
ttttaaagtcgaaggtattatgagggctattttttcattgagttattcagtgcaagctaagatgggagaatttaatattttccttttcaaagatgtgggc |
714 |
Q |
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| T |
32493988 |
ttttaaagtcgaaggtattatgagggctattttttcattgagttattcagtgcaaactgagatgggagaatttaatattttccttttcaaagatgtgggc |
32493889 |
T |
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| Q |
715 |
tgagtgatgtagttttaaaggtcaagttaatggttcgtttcacataaaaatcccgatagctagagtttcctagtacaacatggaattcttttggctgcaa |
814 |
Q |
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| T |
32493888 |
tgagtgatgtagttttaaaggtcaagttaatggttcgtttcacattaaaatcccgatagctagagtttcctagtacaacatggaattcttttggctgcaa |
32493789 |
T |
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| Q |
815 |
tgatattgttcctaaataattgctgctgctaatcgtgtggccttagacatcaataacaataaatgctaatggccgaaagcgccattattgagatgttgca |
914 |
Q |
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| T |
32493788 |
tgatattgttcctaactaattgctgctgctaatcgtgtggccttagacatcaataacaataaatgctaatggccgaaagcgccattattgagatgttgca |
32493689 |
T |
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| Q |
915 |
tttggtgggattagtttccactacctaagtttcgggcaaatcttccataaattct |
969 |
Q |
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| T |
32493688 |
tttggtgggattagtttccactacctaagtttcgggcaaatcttccataaattct |
32493634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 95; E-Value: 6e-46
Query Start/End: Original strand, 12 - 153
Target Start/End: Complemental strand, 32494581 - 32494450
Alignment:
| Q |
12 |
tcatcatggccaattataatataattaatttacgtagtttgttgagtgtgggttataatgtctactatagtttgagttattgtcggttattgtcagtata |
111 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| |||||||||| |
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| T |
32494581 |
tcatcatggccaattataatataattaatttacgtagtttgctgagtgctggttataatgtctactatagtttgagttat----------tgtcagtata |
32494492 |
T |
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| Q |
112 |
ttttggaagaatgctgttagcatactcgcataaagaaaaatg |
153 |
Q |
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| T |
32494491 |
ttttggaagaatgctgttagcatactcgcataaagaaaaatg |
32494450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 886 - 963
Target Start/End: Original strand, 33399709 - 33399795
Alignment:
| Q |
886 |
gccgaaagcgccattattgagatgttgcatttggtg---------ggattagtttccactacctaagtttcgggcaaatcttccata |
963 |
Q |
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|||||||||||||||||||||||| ||||||||||| |||||||||||||||| |||| |||||||||||||||||||| |
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| T |
33399709 |
gccgaaagcgccattattgagatgatgcatttggtgtctttagtgggattagtttccactagctaattttcgggcaaatcttccata |
33399795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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