View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2510_low_10 (Length: 382)
Name: NF2510_low_10
Description: NF2510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2510_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 338; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 1 - 375
Target Start/End: Original strand, 2117230 - 2117606
Alignment:
| Q |
1 |
gcagaagatactaattagtgggatggaatgaaagtaagaaggtttatcagagcttgttagaaagcaatggacgtttataaaggtccaggcgtgaggtact |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2117230 |
gcagaagatactaattagtgggatggaatgaaagtaagaaggtttatcagagcttgttagaaagcaatggacgtttataaaggtccaggcgtgaggtact |
2117329 |
T |
|
| Q |
101 |
tttgtattgaaggacaaattgagaaagattctaaaacaaaaacaaagagagtgcatggaatccgaaccacttttgtattgaaggtccaagcgtgagttaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| || ||||||| |
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| T |
2117330 |
tttgtattgaaggacaaattgagaaagattctaaaacaaaaacaaagagagtgcatggaattcgaaccacttttgtattgaatgtccaggcatgagttac |
2117429 |
T |
|
| Q |
201 |
acgaaattaaccttcaacaataaaccctaatttctgtcattttcccgtatctcttctcgtgg--acaagagattaaatgatttcttcccaaggtgtttaa |
298 |
Q |
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|
||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
2117430 |
acgaaattaaccttcaacaataaaccctaatttatgtcattttcctgtatctcttctcgtggacacaagagattaaatgatttcttcccaaggtgtttaa |
2117529 |
T |
|
| Q |
299 |
aagtgtttctaaaccctagaattttcccccaaactctcaattttaaccctaaaagttcccacttatgttgccataga |
375 |
Q |
| |
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| T |
2117530 |
aagtgtttctaaaccctagaattttcccccaaactctcaattttaaccctaaaagttcccacttatgttgccataga |
2117606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 297 - 352
Target Start/End: Complemental strand, 42803852 - 42803796
Alignment:
| Q |
297 |
aaaagtgtttctaaaccctagaattttcccccaaactctcaa-ttttaaccctaaaa |
352 |
Q |
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|
| T |
42803852 |
aaaagtgtttcccaaccctagaattttcccaaaaactctcaatttttaaccctaaaa |
42803796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 194 - 307
Target Start/End: Original strand, 31026097 - 31026211
Alignment:
| Q |
194 |
gagttaaacgaaattaaccttcaacaa-taaaccctaatttctgtcattttcccgtatctcttctcgtggacaagagattaaatgatttcttcccaaggt |
292 |
Q |
| |
|
|||||| | ||||||| | |||||||| |||||||| |||||| ||||||||| ||||||| | |||| ||||| | | |||||||| |||||||||| |
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| T |
31026097 |
gagttacaagaaattagctttcaacaagtaaaccctgatttctaccattttcccaaatctcttattgtggtcaagatactcaatgatttattcccaaggt |
31026196 |
T |
|
| Q |
293 |
gtttaaaagtgtttc |
307 |
Q |
| |
|
|| |||||||||||| |
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| T |
31026197 |
gtataaaagtgtttc |
31026211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 203 - 235
Target Start/End: Original strand, 38860465 - 38860497
Alignment:
| Q |
203 |
gaaattaaccttcaacaataaaccctaatttct |
235 |
Q |
| |
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||||||| ||||||||||||||||||||||||| |
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|
| T |
38860465 |
gaaattagccttcaacaataaaccctaatttct |
38860497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 216 - 331
Target Start/End: Complemental strand, 27935783 - 27935668
Alignment:
| Q |
216 |
aacaataaaccctaatttctgtcattttcccgtatctcttctcgtggacaagagattaaatgatttcttcccaaggtgtttaaaagtgtttctaaaccct |
315 |
Q |
| |
|
||||||||||| |||||||| ||||||| |||||||||||||||||| | | | |||||||| ||||||| |||||| ||||||||| |||| | |
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| T |
27935783 |
aacaataaaccataatttctacatttttccccaatctcttctcgtggacaaaatactcaatgatttattcccaaagtgttttgaagtgtttcccaacctt |
27935684 |
T |
|
| Q |
316 |
agaattttcccccaaa |
331 |
Q |
| |
|
|||| |||||||||| |
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|
| T |
27935683 |
agaaacttcccccaaa |
27935668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 213 - 322
Target Start/End: Complemental strand, 32889646 - 32889539
Alignment:
| Q |
213 |
ttcaacaataaaccctaatttctgtcattttcccgtatctcttctcgtggacaagagattaaatgatttcttcccaaggtgtttaaaagtgtttctaaac |
312 |
Q |
| |
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|||||||||||| ||||||||| | | ||| || |||||||| ||||| ||||||| | |||||| |||||||||||| |||||||||||| || |
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| T |
32889646 |
ttcaacaataaaatctaatttctaccctgttcgcgaatctcttcacgtggccaagagactt--tgatttattcccaaggtgtacaaaagtgtttcttaat |
32889549 |
T |
|
| Q |
313 |
cctagaattt |
322 |
Q |
| |
|
|||||||||| |
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|
| T |
32889548 |
cctagaattt |
32889539 |
T |
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