View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2510_low_12 (Length: 362)

Name: NF2510_low_12
Description: NF2510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2510_low_12
NF2510_low_12
[»] chr2 (10 HSPs)
chr2 (4-324)||(41009529-41009850)
chr2 (207-325)||(10498684-10498802)
chr2 (241-311)||(12287678-12287748)
chr2 (207-325)||(16644015-16644132)
chr2 (210-296)||(28235502-28235588)
chr2 (285-325)||(37599768-37599808)
chr2 (175-274)||(34878602-34878701)
chr2 (207-272)||(32033020-32033085)
chr2 (171-227)||(4075533-4075589)
chr2 (190-274)||(7700383-7700466)
[»] chr8 (6 HSPs)
chr8 (169-325)||(31235806-31235962)
chr8 (207-325)||(37044384-37044502)
chr8 (207-325)||(72564-72680)
chr8 (207-294)||(16863269-16863355)
chr8 (171-272)||(45486161-45486262)
chr8 (171-199)||(12585748-12585776)
[»] chr3 (14 HSPs)
chr3 (207-325)||(25735164-25735282)
chr3 (169-279)||(4137227-4137337)
chr3 (207-325)||(49907008-49907126)
chr3 (218-325)||(43426788-43426895)
chr3 (183-272)||(24309922-24310011)
chr3 (207-325)||(25203060-25203176)
chr3 (207-297)||(23778281-23778371)
chr3 (171-272)||(7856545-7856646)
chr3 (171-272)||(26285780-26285881)
chr3 (176-272)||(38573022-38573118)
chr3 (169-215)||(12005423-12005469)
chr3 (171-272)||(25070677-25070778)
chr3 (171-272)||(26903196-26903297)
chr3 (171-272)||(36617743-36617844)
[»] chr1 (10 HSPs)
chr1 (211-325)||(10160161-10160275)
chr1 (169-280)||(45867624-45867735)
chr1 (177-320)||(14230072-14230215)
chr1 (210-325)||(31860676-31860792)
chr1 (261-325)||(44942588-44942652)
chr1 (207-325)||(9367648-9367771)
chr1 (171-253)||(8065045-8065127)
chr1 (202-252)||(13694311-13694361)
chr1 (261-309)||(47508918-47508966)
chr1 (171-227)||(1016971-1017027)
[»] scaffold0684 (1 HSPs)
scaffold0684 (169-297)||(4126-4254)
[»] scaffold0163 (1 HSPs)
scaffold0163 (169-297)||(3864-3992)
[»] chr6 (7 HSPs)
chr6 (185-322)||(11380003-11380134)
chr6 (207-325)||(67191-67309)
chr6 (177-253)||(14430003-14430079)
chr6 (207-272)||(6689251-6689316)
chr6 (171-272)||(18816958-18817059)
chr6 (171-272)||(24901727-24901828)
chr6 (221-325)||(5161171-5161275)
[»] chr5 (12 HSPs)
chr5 (207-325)||(18475959-18476077)
chr5 (207-326)||(30335486-30335605)
chr5 (207-325)||(41047387-41047505)
chr5 (197-326)||(30485396-30485525)
chr5 (214-325)||(22229411-22229522)
chr5 (214-325)||(32868325-32868432)
chr5 (227-325)||(17109003-17109102)
chr5 (207-311)||(29456543-29456647)
chr5 (182-272)||(7607231-7607321)
chr5 (261-322)||(31280145-31280206)
chr5 (207-272)||(36744983-36745048)
chr5 (207-281)||(11079887-11079961)
[»] chr4 (10 HSPs)
chr4 (207-325)||(13216490-13216608)
chr4 (207-325)||(20526596-20526714)
chr4 (207-325)||(45538154-45538273)
chr4 (207-301)||(53840462-53840556)
chr4 (205-325)||(24571836-24571956)
chr4 (207-325)||(35765212-35765329)
chr4 (207-311)||(14272454-14272558)
chr4 (171-227)||(1112090-1112146)
chr4 (261-323)||(56341147-56341209)
chr4 (171-272)||(2158676-2158777)
[»] chr7 (8 HSPs)
chr7 (169-253)||(18114605-18114689)
chr7 (207-311)||(3855385-3855489)
chr7 (207-325)||(5467395-5467513)
chr7 (171-271)||(33941595-33941695)
chr7 (175-272)||(30074591-30074688)
chr7 (171-272)||(43265900-43266001)
chr7 (171-271)||(2945354-2945454)
chr7 (171-199)||(22972881-22972909)
[»] scaffold0051 (1 HSPs)
scaffold0051 (219-323)||(13319-13424)
[»] scaffold0042 (1 HSPs)
scaffold0042 (268-325)||(93916-93973)


Alignment Details
Target: chr2 (Bit Score: 298; Significance: 1e-167; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 4 - 324
Target Start/End: Original strand, 41009529 - 41009850
Alignment:
Q  4 agatccaaattttaattttctttttgtttgttccacaaactcagcctgaaacacaagaacacactttccctccacttctcagcaaacgcttttcattctt 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41009529 agatccaaattttaattttctttttgtttgttccacaaactcagcctgaaacacaagaacacactttccctccacttctcagcaaacgcttttcattctt 41009628  T
Q  104 ctttctctcggcaaatgcgcacaacacaacataactacagaacagaagcacgttggatgagaaagagatgggtgatcaatggttaaatgattgtcttata 203  Q
    ||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  41009629 ctttctctcagcaaatgcgcacaacacaacataactgcagaacagaagcacgttggatgagaaagagatgggtgatcaatggttaaatgatcgtcttata 41009728  T
Q  204 atgtatatagaaagagatgttcttagaacaataagaaatgatgtaattttgactcaatttcaacaaatg-aaaaatagaacattttctttgtaattttga 302  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||    
T  41009729 atgtatatagaaagagatgttcttagaacaataagaaatgatgtaattttgactcaatttcaacaaatgaaaaaatagagcattttctttgtaattttga 41009828  T
Q  303 ttgctacaattacttttaatat 324  Q
    ||||||||||||||||||||||    
T  41009829 ttgctacaattacttttaatat 41009850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 207 - 325
Target Start/End: Original strand, 10498684 - 10498802
Alignment:
Q  207 tatatagaaagagatgttcttagaacaataagaaatgatgtaattttgactcaatttcaacaaatgaaaaatagaacattttctttgtaattttgattgc 306  Q
    ||||||||||||||||||||||||||||| || |||||| |||||||   ||| ||||||||||| ||||||| |  ||||||||| |||||||  ||||    
T  10498684 tatatagaaagagatgttcttagaacaattagtaatgatataattttagttcattttcaacaaataaaaaatatattattttctttataattttcgttgc 10498783  T
Q  307 tacaattacttttaatata 325  Q
    ||||| || ||||||||||    
T  10498784 tacaactatttttaatata 10498802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 241 - 311
Target Start/End: Original strand, 12287678 - 12287748
Alignment:
Q  241 atgatgtaattttgactcaatttcaacaaatgaaaaatagaacattttctttgtaattttgattgctacaa 311  Q
    |||||||||||||  |||| ||||||||||||||||||| | ||||||||||||||||||  |||||||||    
T  12287678 atgatgtaattttagctcattttcaacaaatgaaaaatatagcattttctttgtaattttagttgctacaa 12287748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 207 - 325
Target Start/End: Original strand, 16644015 - 16644132
Alignment:
Q  207 tatatagaaagagatgttcttagaacaataagaaatgatgtaattttgactcaatttcaacaaatgaaaaatagaacattttctttgtaattttgattgc 306  Q
    |||||| |||||||||||||||||| ||| |  |||||| ||||||| | | | ||| |||||||   |||||||  |||||||||||||||||||||||    
T  16644015 tatataaaaagagatgttcttagaaaaattaataatgatataattttaatttatttttaacaaataggaaatagat-attttctttgtaattttgattgc 16644113  T
Q  307 tacaattacttttaatata 325  Q
    ||||| || || |||||||    
T  16644114 tacaactatttctaatata 16644132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 210 - 296
Target Start/End: Original strand, 28235502 - 28235588
Alignment:
Q  210 atagaaagagatgttcttagaacaataagaaatgatgtaattttgactcaatttcaacaaatgaaaaatagaacattttctttgtaa 296  Q
    ||||||| |||||||||||||||||| | ||||||||| ||||| ||| | |||||| ||||| || ||| |  |||||||||||||    
T  28235502 atagaaaaagatgttcttagaacaattataaatgatgttattttaactaattttcaataaatggaagataaactattttctttgtaa 28235588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 285 - 325
Target Start/End: Original strand, 37599768 - 37599808
Alignment:
Q  285 ttttctttgtaattttgattgctacaattacttttaatata 325  Q
    ||||||||||||||||| |||||||||||| ||||||||||    
T  37599768 ttttctttgtaattttggttgctacaattatttttaatata 37599808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 175 - 274
Target Start/End: Original strand, 34878602 - 34878701
Alignment:
Q  175 gtgatcaatggttaaatgattgtcttataatgtatatagaaagagatgttcttagaacaataagaaatgatgtaattttgactcaatttcaacaaatgaa 274  Q
    ||||| |||||||||||||| ||||| |||  |||||||||| | ||||||||  |||||| |  ||||| ||  |||| ||||| ||||||||||||||    
T  34878602 gtgattaatggttaaatgatcgtcttgtaacttatatagaaatatatgttcttttaacaattaacaatgacgtctttttaactcattttcaacaaatgaa 34878701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 272
Target Start/End: Complemental strand, 32033085 - 32033020
Alignment:
Q  207 tatatagaaagagatgttcttagaacaataagaaatgatgtaattttgactcaatttcaacaaatg 272  Q
    |||||||||||||||||||||  |||||| || | |||||| ||||| ||||| ||| ||||||||    
T  32033085 tatatagaaagagatgttcttttaacaattagtactgatgtcattttaactcatttttaacaaatg 32033020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 171 - 227
Target Start/End: Complemental strand, 4075589 - 4075533
Alignment:
Q  171 atgggtgatcaatggttaaatgattgtcttataatgtatatagaaagagatgttctt 227  Q
    |||||||||||||||||||||||| | ||| |||  | ||| |||||||||||||||    
T  4075589 atgggtgatcaatggttaaatgatcggcttgtaacttttattgaaagagatgttctt 4075533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 190 - 274
Target Start/End: Complemental strand, 7700466 - 7700383
Alignment:
Q  190 atgattgtcttataatgtatatagaaagagatgttcttagaacaataagaaatgatgtaattttgactcaatttcaacaaatgaa 274  Q
    ||||||||||| |||  |||||||||||| ||||||||  |||||| || |||||||| |||||  |||| |||||||| |||||    
T  7700466 atgattgtcttgtaacttatatagaaaga-atgttcttttaacaattagcaatgatgtcattttagctcattttcaacatatgaa 7700383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 81; Significance: 5e-38; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 169 - 325
Target Start/End: Original strand, 31235806 - 31235962
Alignment:
Q  169 agatgggtgatcaatggttaaatgattgtcttataatgtatatagaaagagatgttcttagaacaataagaaatgatgtaattttgactcaatttcaaca 268  Q
    ||||||||| |||||| ||||||||| ||||| ||| ||| ||||| ||||||||||||  |||||| || ||||||||||||||  |||| ||||||||    
T  31235806 agatgggtggtcaatgtttaaatgatcgtcttgtaacgtacatagagagagatgttcttgaaacaattagtaatgatgtaattttagctcattttcaaca 31235905  T
Q  269 aatgaaaaatagaacattttctttgtaattttgattgctacaattacttttaatata 325  Q
    |||| |||||||| ||||||||||||||||||| ||||||||| || ||||||||||    
T  31235906 aatggaaaatagagcattttctttgtaattttggttgctacaactatttttaatata 31235962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 207 - 325
Target Start/End: Original strand, 37044384 - 37044502
Alignment:
Q  207 tatatagaaagagatgttcttagaacaataagaaatgatgtaattttgactcaatttcaacaaatgaaaaatagaacattttctttgtaattttgattgc 306  Q
    ||||| ||||||||||||||||||||| | || ||||||||||| ||   ||| |||||||||||||||||||||  ||||| |||||  ||||| ||||    
T  37044384 tatattgaaagagatgttcttagaacagttagtaatgatgtaatattagttcattttcaacaaatgaaaaatagattattttatttgtggttttggttgc 37044483  T
Q  307 tacaattacttttaatata 325  Q
    ||||| || ||||||||||    
T  37044484 tacaactatttttaatata 37044502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 207 - 325
Target Start/End: Complemental strand, 72680 - 72564
Alignment:
Q  207 tatatagaaagagatgttcttagaacaataagaaatgatgtaattttgactcaatttcaacaaatgaaaaatagaacattttctttgtaattttgattgc 306  Q
    ||||||||||||||| ||||||||| ||| || |||||| | |||||   ||| |||||||||||| ||| ||||  |||  ||||||||||||| ||||    
T  72680 tatatagaaagagatattcttagaaaaattagtaatgatatgattttacttcattttcaacaaatggaaagtagattatt--ctttgtaattttggttgc 72583  T
Q  307 tacaattacttttaatata 325  Q
    ||||| || ||||||||||    
T  72582 tacaactatttttaatata 72564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 207 - 294
Target Start/End: Complemental strand, 16863355 - 16863269
Alignment:
Q  207 tatatagaaagagatgttcttagaacaataagaaatgatgtaattttgactcaatttcaacaaatgaaaaatagaacattttctttgt 294  Q
    |||||||||||| || || || ||||||| || |||||||||||||| | ||| |||||||||||| |||||| |  |||||||||||    
T  16863355 tatatagaaagatat-ttattggaacaattagcaatgatgtaattttaattcattttcaacaaatggaaaatatattattttctttgt 16863269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 272
Target Start/End: Original strand, 45486161 - 45486262
Alignment:
Q  171 atgggtgatcaatggttaaatgattgtcttataatgtatatagaaagagatgttcttagaacaataagaaatgatgtaattttgactcaatttcaacaaa 270  Q
    |||||||||||||||||||||||| | ||| |||  | ||| |||||||||||||||   ||||| || | |||||| ||| |  |||| ||||||||||    
T  45486161 atgggtgatcaatggttaaatgatcggcttgtaacttttattgaaagagatgttcttttcacaattagcactgatgttattctagctcattttcaacaaa 45486260  T
Q  271 tg 272  Q
    ||    
T  45486261 tg 45486262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 171 - 199
Target Start/End: Complemental strand, 12585776 - 12585748
Alignment:
Q  171 atgggtgatcaatggttaaatgattgtct 199  Q
    |||||||||||||||||||||||||||||    
T  12585776 atgggtgatcaatggttaaatgattgtct 12585748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 63; Significance: 3e-27; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 207 - 325
Target Start/End: Complemental strand, 25735282 - 25735164
Alignment:
Q  207 tatatagaaagagatgttcttagaacaataagaaatgatgtaattttgactcaatttcaacaaatgaaaaatagaacattttctttgtaattttgattgc 306  Q
    ||||||||||||||||||||| ||| ||| || |||||| ||||||| | ||| |||||||||| ||||||||||  |||||||||||||||||| ||||    
T  25735282 tatatagaaagagatgttctttgaataattagtaatgatataattttaattcattttcaacaaacgaaaaatagattattttctttgtaattttggttgc 25735183  T
Q  307 tacaattacttttaatata 325  Q
    ||||| || ||||||||||    
T  25735182 tacaactatttttaatata 25735164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 169 - 279
Target Start/End: Original strand, 4137227 - 4137337
Alignment:
Q  169 agatgggtgatcaatggttaaatgattgtcttataatgtatatagaaagagatgttcttagaacaataagaaatgatgtaattttgactcaatttcaaca 268  Q
    ||||| ||||||||| |||||||||| ||||| |||  ||||||| ||||||||||||||||||||| || || ||||| ||||| ||||| ||||||||    
T  4137227 agatgagtgatcaatagttaaatgatcgtcttgtaacatatatagtaagagatgttcttagaacaattagtaacgatgtcattttaactcattttcaaca 4137326  T
Q  269 aatgaaaaata 279  Q
    |||| ||||||    
T  4137327 aatggaaaata 4137337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 207 - 325
Target Start/End: Original strand, 49907008 - 49907126
Alignment:
Q  207 tatatagaaagagatgttcttagaacaataagaaatgatgtaattttgactcaatttcaacaaatgaaaaatagaacattttctttgtaattttgattgc 306  Q
    ||||||||||||||||||||||||||||| || |||||| |||||||   ||| |||| ||||||||||| || |  ||||| |||||||||||  ||||    
T  49907008 tatatagaaagagatgttcttagaacaattagtaatgatataattttatttcattttctacaaatgaaaagtacattattttatttgtaattttagttgc 49907107  T
Q  307 tacaattacttttaatata 325  Q
    ||||| || |||| |||||    
T  49907108 tacaactattttttatata 49907126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 218 - 325
Target Start/End: Complemental strand, 43426895 - 43426788
Alignment:
Q  218 agatgttcttagaacaataagaaatgatgtaattttgactcaatttcaacaaatgaaaaatagaacattttctttgtaattttgattgctacaattactt 317  Q
    |||||||||||||||||| || |||||| |||||||   ||| ||||  |||||| ||||||||  |||||||||||||||||| || |||||| || ||    
T  43426895 agatgttcttagaacaattagcaatgatataattttagttcattttcttcaaatggaaaatagattattttctttgtaattttggttactacaactattt 43426796  T
Q  318 ttaatata 325  Q
    ||||||||    
T  43426795 ttaatata 43426788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 183 - 272
Target Start/End: Complemental strand, 24310011 - 24309922
Alignment:
Q  183 tggttaaatgattgtcttataatgtatatagaaagagatgttcttagaacaataagaaatgatgtaattttgactcaatttcaacaaatg 272  Q
    ||||||||||| |||||| |||  || ||||||||||||||||||  |||||| |  |||||||| ||||||||| | ||||||||||||    
T  24310011 tggttaaatgaatgtcttgtaacttacatagaaagagatgttcttttaacaattaacaatgatgtgattttgacttattttcaacaaatg 24309922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 207 - 325
Target Start/End: Original strand, 25203060 - 25203176
Alignment:
Q  207 tatatagaaagagatgttcttagaacaataagaaatgatgtaattttgactcaatttcaacaaatgaaaaatagaacattttctttgtaattttgattgc 306  Q
    ||||||||||||||||||||||||| ||| || |||||| |||||||   ||| ||||||||||  ||||| | || |  ||||||||||||||| || |    
T  25203060 tatatagaaagagatgttcttagaataattagtaatgatataattttagttcattttcaacaaa--aaaaaaaaaaaaaattctttgtaattttggttac 25203157  T
Q  307 tacaattacttttaatata 325  Q
    ||||| || || |||||||    
T  25203158 tacaactatttctaatata 25203176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 207 - 297
Target Start/End: Complemental strand, 23778371 - 23778281
Alignment:
Q  207 tatatagaaagagatgttcttagaacaataagaaatgatgtaattttgactcaatttcaacaaatgaaaaatagaacattttctttgtaat 297  Q
    |||||||||||||||||||||  |||||| || |||||||| |||||  |||| |||||||||||| | || ||| ||||||  |||||||    
T  23778371 tatatagaaagagatgttcttttaacaattagcaatgatgtcattttagctcattttcaacaaatggataagagaccatttttattgtaat 23778281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 171 - 272
Target Start/End: Complemental strand, 7856646 - 7856545
Alignment:
Q  171 atgggtgatcaatggttaaatgattgtcttataatgtatatagaaagagatgttcttagaacaataagaaatgatgtaattttgactcaatttcaacaaa 270  Q
    ||||||||||| ||| ||||||| |||||| |||  |||||||||||||||||||||  |||||| |  ||||| || |||||  |||| ||| ||||||    
T  7856646 atgggtgatcagtggctaaatgactgtcttgtaacttatatagaaagagatgttcttttaacaattaacaatgacgtcattttagctcatttttaacaaa 7856547  T
Q  271 tg 272  Q
    ||    
T  7856546 tg 7856545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 171 - 272
Target Start/End: Original strand, 26285780 - 26285881
Alignment:
Q  171 atgggtgatcaatggttaaatgattgtcttataatgtatatagaaagagatgttcttagaacaataagaaatgatgtaattttgactcaatttcaacaaa 270  Q
    ||||||||| | ||| ||||||| |||||| |||  ||| |||||||| ||||||||  |||||| || ||||||||  |||| ||||| ||||||||||    
T  26285780 atgggtgattagtggctaaatgactgtcttgtaacatatgtagaaagatatgttcttttaacaattagcaatgatgtccttttaactcattttcaacaaa 26285879  T
Q  271 tg 272  Q
    ||    
T  26285880 tg 26285881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 176 - 272
Target Start/End: Complemental strand, 38573118 - 38573022
Alignment:
Q  176 tgatcaatggttaaatgattgtcttataatgtatatagaaagagatgttcttagaacaataagaaatgatgtaattttgactcaatttcaacaaatg 272  Q
    |||||||||| |||||||| ||| | |||  ||||||||||||||||||||   |||||| || |||| ||| |||||  |||| ||||||||||||    
T  38573118 tgatcaatggctaaatgatcgtcgtgtaacttatatagaaagagatgttctattaacaattagcaatgctgtcattttagctcattttcaacaaatg 38573022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 169 - 215
Target Start/End: Original strand, 12005423 - 12005469
Alignment:
Q  169 agatgggtgatcaatggttaaatgattgtcttataatgtatatagaa 215  Q
    ||||| |||||||||||||||||||| ||||| ||| ||||||||||    
T  12005423 agatgagtgatcaatggttaaatgatcgtcttgtaacgtatatagaa 12005469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 272
Target Start/End: Original strand, 25070677 - 25070778
Alignment:
Q  171 atgggtgatcaatggttaaatgattgtcttataatgtatatagaaagagatgttcttagaacaataagaaatgatgtaattttgactcaatttcaacaaa 270  Q
    |||||||||||||||||||||||| | ||| |||  | ||| |||||||||||||||   ||||| || | |||||| ||| |  |||| ||||||||||    
T  25070677 atgggtgatcaatggttaaatgatcggcttgtaacttttattgaaagagatgttcttttcacaattagcactgatgttattctagctcattttcaacaaa 25070776  T
Q  271 tg 272  Q
    ||    
T  25070777 tg 25070778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 272
Target Start/End: Complemental strand, 26903297 - 26903196
Alignment:
Q  171 atgggtgatcaatggttaaatgattgtcttataatgtatatagaaagagatgttcttagaacaataagaaatgatgtaattttgactcaatttcaacaaa 270  Q
    |||||||||||||||||||||||| | ||| |||  | ||| |||||||||||||||   ||||| || | |||||| ||| |  |||| ||||||||||    
T  26903297 atgggtgatcaatggttaaatgatcggcttgtaacttttattgaaagagatgttcttttcacaattagcactgatgttattctagctcattttcaacaaa 26903198  T
Q  271 tg 272  Q
    ||    
T  26903197 tg 26903196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 272
Target Start/End: Original strand, 36617743 - 36617844
Alignment:
Q  171 atgggtgatcaatggttaaatgattgtcttataatgtatatagaaagagatgttcttagaacaataagaaatgatgtaattttgactcaatttcaacaaa 270  Q
    |||||||||||||||||||||||| | ||| |||  | ||| |||||||||||||||   ||||| || | |||||| ||| |  |||| ||||||||||    
T  36617743 atgggtgatcaatggttaaatgatcggcttgtaacttttattgaaagagatgttcttttcacaattagcactgatgttattctagctcattttcaacaaa 36617842  T
Q  271 tg 272  Q
    ||    
T  36617843 tg 36617844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 3e-27; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 211 - 325
Target Start/End: Original strand, 10160161 - 10160275
Alignment:
Q  211 tagaaagagatgttcttagaacaataagaaatgatgtaattttgactcaatttcaacaaatgaaaaatagaacattttctttgtaattttgattgctaca 310  Q
    ||||||||||||||||||||| ||| || |||||| ||||||| | ||| |||||||||| |||||||||| ||||||| |||||||||| |||||||||    
T  10160161 tagaaagagatgttcttagaataattagtaatgatataattttaattcattttcaacaaacgaaaaatagatcattttcattgtaattttaattgctaca 10160260  T
Q  311 attacttttaatata 325  Q
    | || ||||||||||    
T  10160261 actatttttaatata 10160275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 169 - 280
Target Start/End: Complemental strand, 45867735 - 45867624
Alignment:
Q  169 agatgggtgatcaatggttaaatgattgtcttataatgtatatagaaagagatgttcttagaacaataagaaatgatgtaattttgactcaatttcaaca 268  Q
    ||||| ||| |||||| ||||| ||| ||||| ||||||||||| ||| |||||||||||||||||| || || |||| |||||| ||||| | ||||||    
T  45867735 agatgagtgttcaatgtttaaacgatcgtcttgtaatgtatataaaaatagatgttcttagaacaattagtaacgatgcaattttaactcattctcaaca 45867636  T
Q  269 aatgaaaaatag 280  Q
    ||||||||||||    
T  45867635 aatgaaaaatag 45867624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 177 - 320
Target Start/End: Original strand, 14230072 - 14230215
Alignment:
Q  177 gatcaatggttaaatgattgtcttataatgtatatagaaagagatgttcttagaacaataagaaatgatgtaattttgactcaatttcaacaaatgaaaa 276  Q
    |||||||| |||||||||  |||| |||  |||||||||||| ||||||||| |||| | || ||| || |||||||  |||| |||||||||||| | |    
T  14230072 gatcaatgattaaatgatcatcttgtaagatatatagaaagaaatgttcttaaaacagttagtaataatataattttagctcattttcaacaaatggata 14230171  T
Q  277 atagaacattttctttgtaattttgattgctacaattactttta 320  Q
     ||||   ||||||||||||||||| ||||||||| || |||||    
T  14230172 ctagagttttttctttgtaattttggttgctacaactattttta 14230215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 210 - 325
Target Start/End: Complemental strand, 31860792 - 31860676
Alignment:
Q  210 atagaaagagatgttcttagaacaataagaaatgatgtaattttgactcaatttcaacaaatgaaaaataga-acattttctttgtaattttgattgcta 308  Q
    |||||||||||||||||||||||||  || |||||| |||||||   ||| ||||||||||| |||||||||    |||| |||||||||||| ||||||    
T  31860792 atagaaagagatgttcttagaacaaatagtaatgatataattttagttcattttcaacaaataaaaaatagattttttttttttgtaattttgtttgcta 31860693  T
Q  309 caattacttttaatata 325  Q
    ||| || | ||||||||    
T  31860692 caactattcttaatata 31860676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 261 - 325
Target Start/End: Original strand, 44942588 - 44942652
Alignment:
Q  261 tttcaacaaatgaaaaatagaacattttctttgtaattttgattgctacaattacttttaatata 325  Q
    |||||||||||| |||||||| ||||| ||||||||||||| |||||||||  ||||||||||||    
T  44942588 tttcaacaaatggaaaatagagcatttgctttgtaattttggttgctacaaccacttttaatata 44942652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 207 - 325
Target Start/End: Original strand, 9367648 - 9367771
Alignment:
Q  207 tatatagaaagagatgttcttagaacaataagaaatgatgtaattttgactcaatttcaacaaatgaaaaatagaaca-----ttttctttgtaattttg 301  Q
    |||||||||| ||||||||||  |||||| || ||| || |||||||  |||| |||||||||||| |||||| | ||     |||| |||||||||||     
T  9367648 tatatagaaatagatgttcttcaaacaatcagtaataatctaattttagctcattttcaacaaatggaaaatatagcatttttttttttttgtaatttta 9367747  T
Q  302 attgctacaattacttttaatata 325  Q
     ||||||||| |||||||||||||    
T  9367748 gttgctacaactacttttaatata 9367771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 171 - 253
Target Start/End: Complemental strand, 8065127 - 8065045
Alignment:
Q  171 atgggtgatcaatggttaaatgattgtcttataatgtatatagaaagagatgttcttagaacaataagaaatgatgtaatttt 253  Q
    |||| |||||| |||||||||||  |||||||||  |||||| ||||||||||||||  |||||| || |||||||| |||||    
T  8065127 atggatgatcattggttaaatgaccgtcttataacttatataaaaagagatgttcttttaacaattagcaatgatgtcatttt 8065045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 202 - 252
Target Start/End: Original strand, 13694311 - 13694361
Alignment:
Q  202 taatgtatatagaaagagatgttcttagaacaataagaaatgatgtaattt 252  Q
    |||| ||||||||||||||||||||||||||||| || |||||| ||||||    
T  13694311 taatctatatagaaagagatgttcttagaacaattagtaatgatataattt 13694361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 261 - 309
Target Start/End: Complemental strand, 47508966 - 47508918
Alignment:
Q  261 tttcaacaaatgaaaaatagaacattttctttgtaattttgattgctac 309  Q
    |||||||||||| |||||||| ||||||||| ||||||||| |||||||    
T  47508966 tttcaacaaatggaaaatagagcattttcttagtaattttggttgctac 47508918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 171 - 227
Target Start/End: Original strand, 1016971 - 1017027
Alignment:
Q  171 atgggtgatcaatggttaaatgattgtcttataatgtatatagaaagagatgttctt 227  Q
    |||||||||||||||||||||||| | ||| |||  | ||| |||||||||||||||    
T  1016971 atgggtgatcaatggttaaatgatcggcttgtaacttttattgaaagagatgttctt 1017027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0684 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: scaffold0684
Description:

Target: scaffold0684; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 169 - 297
Target Start/End: Complemental strand, 4254 - 4126
Alignment:
Q  169 agatgggtgatcaatggttaaatgattgtcttataatgtatatagaaagagatgttcttagaacaataagaaatgatgtaattttgactcaatttcaaca 268  Q
    |||||||||||||||| | ||||||||||||| |||  |||||||||||||||||||||| || ||| || ||| |||||||||| ||||| |||||||     
T  4254 agatgggtgatcaatgctcaaatgattgtcttgtaacatatatagaaagagatgttcttaaaataattagtaattatgtaattttaactcattttcaact 4155  T
Q  269 aatgaaaaatagaacattttctttgtaat 297  Q
    |||  |||||||| | ||| |||||||||    
T  4154 aattgaaaatagatcttttgctttgtaat 4126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0163 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: scaffold0163
Description:

Target: scaffold0163; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 169 - 297
Target Start/End: Original strand, 3864 - 3992
Alignment:
Q  169 agatgggtgatcaatggttaaatgattgtcttataatgtatatagaaagagatgttcttagaacaataagaaatgatgtaattttgactcaatttcaaca 268  Q
    |||||||||||||||| | ||||||||||||| |||  |||||||||||||||||||||| || ||| || ||| |||||||||| ||||| |||||||     
T  3864 agatgggtgatcaatgctcaaatgattgtcttgtaacatatatagaaagagatgttcttaaaataattagtaattatgtaattttaactcattttcaact 3963  T
Q  269 aatgaaaaatagaacattttctttgtaat 297  Q
    |||  |||||||| | ||| |||||||||    
T  3964 aattgaaaatagatcttttgctttgtaat 3992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 2e-22; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 185 - 322
Target Start/End: Original strand, 11380003 - 11380134
Alignment:
Q  185 gttaaatgattgtcttataatgtatatagaaagagatgttcttagaacaataagaaatgatgtaattttgactcaatttcaacaaatgaaaaatagaaca 284  Q
    |||||||||| ||||| |||  ||||| ||||| |||||||||| |||||| || ||||||||||||      || ||||||||||||||||||||| ||    
T  11380003 gttaaatgatcgtcttgtaacatatattgaaagtgatgttcttaaaacaattagtaatgatgtaatt------cattttcaacaaatgaaaaatagagca 11380096  T
Q  285 ttttctttgtaattttgattgctacaattacttttaat 322  Q
    ||| ||||||||||||| |||||||||  |||||||||    
T  11380097 tttgctttgtaattttggttgctacaaccacttttaat 11380134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 207 - 325
Target Start/End: Original strand, 67191 - 67309
Alignment:
Q  207 tatatagaaagagatgttcttagaacaataagaaatgatgtaattttgactcaatttcaacaaatgaaaaatagaacattttctttgtaattttgattgc 306  Q
    |||||||| | |||||||||||||||||| || ||| || |||||||   ||  ||||||||||| |||||||||  |||||||||||||||||| ||||    
T  67191 tatatagacatagatgttcttagaacaattagtaataatataattttagttcgttttcaacaaataaaaaatagataattttctttgtaattttggttgc 67290  T
Q  307 tacaattacttttaatata 325  Q
    | ||| || ||||||||||    
T  67291 ttcaactatttttaatata 67309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 177 - 253
Target Start/End: Original strand, 14430003 - 14430079
Alignment:
Q  177 gatcaatggttaaatgattgtcttataatgtatatagaaagagatgttcttagaacaataagaaatgatgtaatttt 253  Q
    |||||||  |||||||||  |||| ||| ||||||||||||||||||||||| |||||| || ||||||||||||||    
T  14430003 gatcaataattaaatgatcatcttgtaacgtatatagaaagagatgttcttaaaacaattagtaatgatgtaatttt 14430079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 272
Target Start/End: Complemental strand, 6689316 - 6689251
Alignment:
Q  207 tatatagaaagagatgttcttagaacaataagaaatgatgtaattttgactcaatttcaacaaatg 272  Q
    |||||||||||||||| ||||  |||||| || |||||||| |||||  ||||||||||| |||||    
T  6689316 tatatagaaagagatgatcttttaacaattagcaatgatgtcattttagctcaatttcaataaatg 6689251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 272
Target Start/End: Complemental strand, 18817059 - 18816958
Alignment:
Q  171 atgggtgatcaatggttaaatgattgtcttataatgtatatagaaagagatgttcttagaacaataagaaatgatgtaattttgactcaatttcaacaaa 270  Q
    |||||||||||||||||||||||| | ||| |||  | ||| |||||||||||||||   ||||| || | |||||| ||| |  |||| ||||||||||    
T  18817059 atgggtgatcaatggttaaatgatcggcttgtaacttttattgaaagagatgttcttttcacaattagcactgatgttattctagctcattttcaacaaa 18816960  T
Q  271 tg 272  Q
    ||    
T  18816959 tg 18816958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 272
Target Start/End: Complemental strand, 24901828 - 24901727
Alignment:
Q  171 atgggtgatcaatggttaaatgattgtcttataatgtatatagaaagagatgttcttagaacaataagaaatgatgtaattttgactcaatttcaacaaa 270  Q
    |||||||||||||||||||||||| | ||| |||  | ||| |||||||||||||||   ||||| || | |||||| ||| |  |||| ||||||||||    
T  24901828 atgggtgatcaatggttaaatgatcggcttgtaacttttattgaaagagatgttcttttcacaattagcactgatgttattctagctcattttcaacaaa 24901729  T
Q  271 tg 272  Q
    ||    
T  24901728 tg 24901727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 221 - 325
Target Start/End: Original strand, 5161171 - 5161275
Alignment:
Q  221 tgttcttagaacaataagaaatgatgtaattttgactcaatttcaacaaatgaaaaatagaacattttctttgtaattttgattgctacaattactttta 320  Q
    ||||||||||||||| |  |||||| |||||||   | | |||||||||||| |||||| |  |||||||||||||||||  |||| ||||  | |||||    
T  5161171 tgttcttagaacaattaataatgatataattttagtttattttcaacaaatggaaaataaattattttctttgtaattttagttgccacaaccattttta 5161270  T
Q  321 atata 325  Q
    |||||    
T  5161271 atata 5161275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 207 - 325
Target Start/End: Original strand, 18475959 - 18476077
Alignment:
Q  207 tatatagaaagagatgttcttagaacaataagaaatgatgtaattttgactcaatttcaacaaatgaaaaatagaacattttctttgtaattttgattgc 306  Q
    ||||||||||||||||||||||||||||| || ||| || |||||||   ||| |||||||||||||||||||||  ||||| |||||||||||  || |    
T  18475959 tatatagaaagagatgttcttagaacaattagtaattatataattttagttcattttcaacaaatgaaaaatagattattttatttgtaatttttgttac 18476058  T
Q  307 tacaattacttttaatata 325  Q
    ||||| || ||||||||||    
T  18476059 tacaactatttttaatata 18476077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 207 - 326
Target Start/End: Original strand, 30335486 - 30335605
Alignment:
Q  207 tatatagaaagagatgttcttagaacaataagaaatgatgtaattttgactcaatttcaacaaatgaaaaatagaacattttctttgtaattttgattgc 306  Q
    ||||||||||| ||| ||||||||||||| || ||| || |||||||   | |  |||||||||| |||||||||  |||||||||||||||||||||||    
T  30335486 tatatagaaagggatattcttagaacaattagtaattatataattttagtttatattcaacaaataaaaaatagattattttctttgtaattttgattgc 30335585  T
Q  307 tacaattacttttaatatat 326  Q
    ||||| || |||||||||||    
T  30335586 tacaactatttttaatatat 30335605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 207 - 325
Target Start/End: Complemental strand, 41047505 - 41047387
Alignment:
Q  207 tatatagaaagagatgttcttagaacaataagaaatgatgtaattttgactcaatttcaacaaatgaaaaatagaacattttctttgtaattttgattgc 306  Q
    |||||||||| |||||||||||||||||| |  |||||||||||||| | ||| |||||| ||||||||| || |  ||||||||||| |||||| ||||    
T  41047505 tatatagaaaaagatgttcttagaacaattactaatgatgtaattttaattcattttcaataaatgaaaattaaattattttctttgttattttggttgc 41047406  T
Q  307 tacaattacttttaatata 325  Q
    ||||| || ||| ||||||    
T  41047405 tacaactattttcaatata 41047387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 197 - 326
Target Start/End: Complemental strand, 30485525 - 30485396
Alignment:
Q  197 tcttataatgtatatagaaagagatgttcttagaacaataagaaatgatgtaattttgactcaatttcaacaaatgaaaaatagaacattttctttgtaa 296  Q
    |||| |||| ||||||||||| ||||||||||||||||| || ||| || |||||||   | |  ||||||||||||||||||||   ||||||||||||    
T  30485525 tcttgtaatctatatagaaagggatgttcttagaacaattagtaattatataattttagtttatattcaacaaatgaaaaatagatacttttctttgtaa 30485426  T
Q  297 ttttgattgctacaattacttttaatatat 326  Q
    ||||| |||| |||| || |||||||||||    
T  30485425 ttttggttgcaacaactatttttaatatat 30485396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 214 - 325
Target Start/End: Original strand, 22229411 - 22229522
Alignment:
Q  214 aaagagatgttcttagaacaataagaaatgatgtaattttgactcaatttcaacaaatgaaaaatagaacattttctttgtaattttgattgctacaatt 313  Q
    |||||||||||||||||||||| || ||| || |||||||   | | |||||||||||| |||| |||  ||||||||| |||||||| |||||||||||    
T  22229411 aaagagatgttcttagaacaattagtaataatataattttagtttattttcaacaaatggaaaagagattattttctttataattttggttgctacaatt 22229510  T
Q  314 acttttaatata 325  Q
    | ||||||||||    
T  22229511 atttttaatata 22229522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 214 - 325
Target Start/End: Complemental strand, 32868432 - 32868325
Alignment:
Q  214 aaagagatgttcttagaacaataagaaatgatgtaattttgactcaatttcaacaaatgaaaaatagaacattttctttgtaattttgattgctacaatt 313  Q
    |||||||||||||||||||||| |  |||||||||||||| | ||| ||| |||||||| |||||| || |||   |||||||||||| |||||||||||    
T  32868432 aaagagatgttcttagaacaattattaatgatgtaattttaattcatttttaacaaatg-aaaatataatatt---tttgtaattttggttgctacaatt 32868337  T
Q  314 acttttaatata 325  Q
    | ||||||||||    
T  32868336 atttttaatata 32868325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 227 - 325
Target Start/End: Complemental strand, 17109102 - 17109003
Alignment:
Q  227 tagaacaataagaaatgatgtaattttgactcaatttcaacaaatgaaaaatagaaca-ttttctttgtaattttgattgctacaattacttttaatata 325  Q
    ||||||||| || ||||||| ||||||  |||| |||||||||||||||||||||  | |||| |||||||||||| ||||||||| || ||||||||||    
T  17109102 tagaacaattagtaatgatgcaattttagctcattttcaacaaatgaaaaatagagtatttttttttgtaattttggttgctacaactatttttaatata 17109003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 207 - 311
Target Start/End: Original strand, 29456543 - 29456647
Alignment:
Q  207 tatatagaaagagatgttcttagaacaataagaaatgatgtaattttgactcaatttcaacaaatgaaaaatagaacattttctttgtaattttgattgc 306  Q
    |||||||||| ||||||||||| || ||| || || ||| || ||||   ||| ||| |||||||| ||||||||  |||||||||||||||||||||||    
T  29456543 tatatagaaatagatgttcttaaaataattagtaacgatatagttttagttcatttttaacaaatggaaaatagattattttctttgtaattttgattgc 29456642  T
Q  307 tacaa 311  Q
    |||||    
T  29456643 tacaa 29456647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 182 - 272
Target Start/End: Original strand, 7607231 - 7607321
Alignment:
Q  182 atggttaaatgattgtcttataatgtatatagaaagagatgttcttagaacaataagaaatgatgtaattttgactcaatttcaacaaatg 272  Q
    |||||||||||| |||||| |||  ||||||||||||||||||||   |||||| |  |||||||| |||||  |||| ||||||||||||    
T  7607231 atggttaaatgagtgtcttgtaacttatatagaaagagatgttctattaacaattaacaatgatgtcattttagctcattttcaacaaatg 7607321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 261 - 322
Target Start/End: Complemental strand, 31280206 - 31280145
Alignment:
Q  261 tttcaacaaatgaaaaatagaacattttctttgtaattttgattgctacaattacttttaat 322  Q
    |||||||||||| |||||||| ||||||||| ||||||| | ||||||||| || |||||||    
T  31280206 tttcaacaaatggaaaatagagcattttcttcgtaatttcgtttgctacaactatttttaat 31280145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 207 - 272
Target Start/End: Complemental strand, 36745048 - 36744983
Alignment:
Q  207 tatatagaaagagatgttcttagaacaataagaaatgatgtaattttgactcaatttcaacaaatg 272  Q
    |||||||||||||||||||||  |||||| || |||||||| |||||  |||| ||||||||||||    
T  36745048 tatatagaaagagatgttcttttaacaattagcaatgatgtcattttagctcattttcaacaaatg 36744983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 207 - 281
Target Start/End: Original strand, 11079887 - 11079961
Alignment:
Q  207 tatatagaaagagatgttcttagaacaataagaaatgatgtaattttgactcaatttcaacaaatgaaaaataga 281  Q
    |||||| |||||||||||||||||||||| |  |||||| | |||||   ||| |||||||||||||||| ||||    
T  11079887 tatataaaaagagatgttcttagaacaattaataatgatatgattttatttcattttcaacaaatgaaaagtaga 11079961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 207 - 325
Target Start/End: Complemental strand, 13216608 - 13216490
Alignment:
Q  207 tatatagaaagagatgttcttagaacaataagaaatgatgtaattttgactcaatttcaacaaatgaaaaatagaacattttctttgtaattttgattgc 306  Q
    ||||||||||||||||||||||||||||| || |||||| | ||||||  ||| |||||||||||| ||| ||||  |||||||  ||||||||| ||||    
T  13216608 tatatagaaagagatgttcttagaacaattagtaatgatatgattttgtttcattttcaacaaatggaaagtagattattttctaagtaattttggttgc 13216509  T
Q  307 tacaattacttttaatata 325  Q
    ||||| || ||||||||||    
T  13216508 tacaactatttttaatata 13216490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 207 - 325
Target Start/End: Original strand, 20526596 - 20526714
Alignment:
Q  207 tatatagaaagagatgttcttagaacaataagaaatgatgtaattttgactcaatttcaacaaatgaaaaatagaacattttctttgtaattttgattgc 306  Q
    ||||||||| ||||| || |||||||||| || |||||| |||||||   ||| ||| |||||||||||||||||  |||||||||||||||||| ||||    
T  20526596 tatatagaatgagatatttttagaacaattagtaatgatataattttagttcatttttaacaaatgaaaaatagattattttctttgtaattttggttgc 20526695  T
Q  307 tacaattacttttaatata 325  Q
    |||||  | ||||||||||    
T  20526696 tacaaccatttttaatata 20526714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 207 - 325
Target Start/End: Complemental strand, 45538273 - 45538154
Alignment:
Q  207 tatatagaaagagatgttcttagaacaataagaaatgatgtaattttgactcaatttcaacaaatgaaaaataga-acattttctttgtaattttgattg 305  Q
    ||||||||| ||||||||||||||||||| || |||||| |||||||   ||| |||||||||||| |||||| |    ||||||||| ||||||| |||    
T  45538273 tatatagaaggagatgttcttagaacaatcagtaatgatataattttagttcattttcaacaaatgtaaaatatatttgttttctttgaaattttggttg 45538174  T
Q  306 ctacaattacttttaatata 325  Q
    |||||| || ||||||||||    
T  45538173 ctacaactatttttaatata 45538154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 207 - 301
Target Start/End: Original strand, 53840462 - 53840556
Alignment:
Q  207 tatatagaaagagatgttcttagaacaataagaaatgatgtaattttgactcaatttcaacaaatgaaaaatagaacattttctttgtaattttg 301  Q
    |||||| ||||||||||||||| |||||| || |||||| |||||||   ||| |||||||||||  ||||||||  ||||||||||||||||||    
T  53840462 tatatataaagagatgttcttaaaacaattagtaatgatataattttagttcattttcaacaaatagaaaatagattattttctttgtaattttg 53840556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 205 - 325
Target Start/End: Complemental strand, 24571956 - 24571836
Alignment:
Q  205 tgtatatagaaagagatgttcttagaacaataagaaatgatgtaattttgactcaatttcaacaaatgaaaaatagaacattttctttgtaattttgatt 304  Q
    |||||||| |||||||| |||||| |||||| |  |||||| | |||||   ||| ||| |||||||| ||| ||||  |||||||||||||||||||||    
T  24571956 tgtatatataaagagatattcttaaaacaattaataatgatatgattttatttcattttaaacaaatggaaagtagattattttctttgtaattttgatt 24571857  T
Q  305 gctacaattacttttaatata 325  Q
    ||||||  || ||||||||||    
T  24571856 gctacagctatttttaatata 24571836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 207 - 325
Target Start/End: Complemental strand, 35765329 - 35765212
Alignment:
Q  207 tatatagaaagagatgttcttagaacaataagaaatgatgtaattttgactcaatttcaacaaatgaaaaatagaacattttctttgtaattttgattgc 306  Q
    |||| ||| |||||||||||||||||||| || |||||| | |||||   ||| |||||| ||||| ||| |||   |||||||||||||||||| ||||    
T  35765329 tatacagagagagatgttcttagaacaattagtaatgatatgattttagttcattttcaataaatggaaagtagtttattttctttgtaattttggttgc 35765230  T
Q  307 tacaattacttttaatata 325  Q
    ||||| || ||||||||||    
T  35765229 tacaacta-ttttaatata 35765212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 207 - 311
Target Start/End: Original strand, 14272454 - 14272558
Alignment:
Q  207 tatatagaaagagatgttcttagaacaataagaaatgatgtaattttgactcaatttcaacaaatgaaaaatagaacattttctttgtaattttgattgc 306  Q
    ||||||||||||| |||||||| |||||| |  | |||| ||||| |   ||| |||||||||||| ||||||||  ||||| |||||||||||| ||||    
T  14272454 tatatagaaagagttgttcttataacaattactattgatttaattctagttcattttcaacaaatgcaaaatagattattttatttgtaattttggttgc 14272553  T
Q  307 tacaa 311  Q
    |||||    
T  14272554 tacaa 14272558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 227
Target Start/End: Complemental strand, 1112146 - 1112090
Alignment:
Q  171 atgggtgatcaatggttaaatgattgtcttataatgtatatagaaagagatgttctt 227  Q
    |||| ||||||||||||||||||||||||| |||  |||||||||| | ||||||||    
T  1112146 atggatgatcaatggttaaatgattgtcttgtaacttatatagaaatacatgttctt 1112090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 261 - 323
Target Start/End: Complemental strand, 56341209 - 56341147
Alignment:
Q  261 tttcaacaaatgaaaaatagaacattttctttgtaattttgattgctacaattacttttaata 323  Q
    ||||||||||||||||||| |  |||| ||||||||||||  ||||||||| || ||||||||    
T  56341209 tttcaacaaatgaaaaatatattatttcctttgtaattttagttgctacaactatttttaata 56341147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 272
Target Start/End: Complemental strand, 2158777 - 2158676
Alignment:
Q  171 atgggtgatcaatggttaaatgattgtcttataatgtatatagaaagagatgttcttagaacaataagaaatgatgtaattttgactcaatttcaacaaa 270  Q
    |||||||||  |||| |||||||  ||||| |||  ||||||||||||||| |||||  |||||| || |||||| | |||||  |||| ||||||||||    
T  2158777 atgggtgattgatggctaaatgaccgtcttgtaacctatatagaaagagatcttcttttaacaattagcaatgatattattttagctcattttcaacaaa 2158678  T
Q  271 tg 272  Q
    ||    
T  2158677 tg 2158676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 169 - 253
Target Start/End: Original strand, 18114605 - 18114689
Alignment:
Q  169 agatgggtgatcaatggttaaatgattgtcttataatgtatatagaaagagatgttcttagaacaataagaaatgatgtaatttt 253  Q
    ||||| ||||| |||||||||||||| ||||| ||||||||||||||||| |||||||||||||||| |  ||||||||||||||    
T  18114605 agatgagtgatgaatggttaaatgatcgtcttgtaatgtatatagaaagaaatgttcttagaacaattattaatgatgtaatttt 18114689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 207 - 311
Target Start/End: Complemental strand, 3855489 - 3855385
Alignment:
Q  207 tatatagaaagagatgttcttagaacaataagaaatgatgtaattttgactcaatttcaacaaatgaaaaatagaacattttctttgtaattttgattgc 306  Q
    |||| |||||||||||||||||| ||||| || |||||| |||||||   ||| ||||| ||||||||||||| |  ||||||||| |||||||| ||||    
T  3855489 tatacagaaagagatgttcttaggacaattagtaatgatataattttagttcattttcagcaaatgaaaaatatattattttctttataattttggttgc 3855390  T
Q  307 tacaa 311  Q
    |||||    
T  3855389 tacaa 3855385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 207 - 325
Target Start/End: Complemental strand, 5467513 - 5467395
Alignment:
Q  207 tatatagaaagagatgttcttagaacaataagaaatgatgtaattttgactcaatttcaacaaatgaaaaatagaacattttctttgtaattttgattgc 306  Q
    |||||||||||||| ||| ||  |||||  || |||||| |||||||   ||| |||||||||||||||||||||  |||||||||||||||||| |||     
T  5467513 tatatagaaagagacgttttttaaacaaatagtaatgatataattttacttcattttcaacaaatgaaaaatagattattttctttgtaattttggttgt 5467414  T
Q  307 tacaattacttttaatata 325  Q
    || || || ||||||||||    
T  5467413 tataactatttttaatata 5467395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 171 - 271
Target Start/End: Original strand, 33941595 - 33941695
Alignment:
Q  171 atgggtgatcaatggttaaatgattgtcttataatgtatatagaaagagatgttcttagaacaataagaaatgatgtaattttgactcaatttcaacaaa 270  Q
    |||||| |||| ||| |||||||  ||||| |||  |||||||||||| ||||||||  |||||| || |||||||| ||||| ||||| ||||||||||    
T  33941595 atgggtaatcagtggctaaatgaccgtcttgtaacttatatagaaagaaatgttcttttaacaattagcaatgatgttattttaactcattttcaacaaa 33941694  T
Q  271 t 271  Q
    |    
T  33941695 t 33941695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 175 - 272
Target Start/End: Original strand, 30074591 - 30074688
Alignment:
Q  175 gtgatcaatggttaaatgattgtcttataatgtatatagaaagagatgttcttagaacaataagaaatgatgtaattttgactcaatttcaacaaatg 272  Q
    ||||||||||| |||||||   |||| |||  |||||||||||||||||||||  |||||| |  |||||||| ||||| ||| | ||||||||||||    
T  30074591 gtgatcaatggctaaatgaccatcttgtaacttatatagaaagagatgttcttttaacaattaacaatgatgtcattttaacttattttcaacaaatg 30074688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 171 - 272
Target Start/End: Original strand, 43265900 - 43266001
Alignment:
Q  171 atgggtgatcaatggttaaatgattgtcttataatgtatatagaaagagatgttcttagaacaataagaaatgatgtaattttgactcaatttcaacaaa 270  Q
    |||||||||||||||||||||||| | ||| |||  | |||||||||||||||||||   ||||| || | |||||| ||| |  |||| ||||||||||    
T  43265900 atgggtgatcaatggttaaatgatcggcttgtaacttttatagaaagagatgttcttttcacaattagcactgatgttattctagctcattttcaacaaa 43265999  T
Q  271 tg 272  Q
    ||    
T  43266000 tg 43266001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 171 - 271
Target Start/End: Original strand, 2945354 - 2945454
Alignment:
Q  171 atgggtgatcaatggttaaatgattgtcttataatgtatatagaaagagatgttcttagaacaataagaaatgatgtaattttgactcaatttcaacaaa 270  Q
    |||| |||||| |||||||||||| ||||| ||   ||||||||||| ||| |||||  |||||| || |||||||| |||||   ||| ||||||||||    
T  2945354 atggatgatcagtggttaaatgatcgtcttgtagcttatatagaaagtgattttcttttaacaattagcaatgatgtcattttaggtcattttcaacaaa 2945453  T
Q  271 t 271  Q
    |    
T  2945454 t 2945454  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 171 - 199
Target Start/End: Original strand, 22972881 - 22972909
Alignment:
Q  171 atgggtgatcaatggttaaatgattgtct 199  Q
    |||||||||||||||||||||||||||||    
T  22972881 atgggtgatcaatggttaaatgattgtct 22972909  T

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Target: scaffold0051 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 219 - 323
Target Start/End: Complemental strand, 13424 - 13319
Alignment:
Q  219 gatgttcttagaacaataagaaatgatgtaattttgactcaatttcaacaaatgaaaaatagaacattttcttt-gtaattttgattgctacaattactt 317  Q
    ||||||||||||||||| || || |||||||||||  |||| |||||||||||||||| ||||   |||| ||| ||||||||| |||||| || || ||    
T  13424 gatgttcttagaacaattagtaacgatgtaattttagctcattttcaacaaatgaaaattagagttttttttttggtaattttggttgctaaaactattt 13325  T
Q  318 ttaata 323  Q
    ||||||    
T  13324 ttaata 13319  T

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Target: scaffold0042 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 268 - 325
Target Start/End: Complemental strand, 93973 - 93916
Alignment:
Q  268 aaatgaaaaatagaacattttctttgtaattttgattgctacaattacttttaatata 325  Q
    ||||| |||||||||||||||||||||| ||||| ||||||||| || ||||||||||    
T  93973 aaatggaaaatagaacattttctttgtagttttggttgctacaactatttttaatata 93916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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