View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2510_low_17 (Length: 288)
Name: NF2510_low_17
Description: NF2510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2510_low_17 |
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| [»] scaffold0771 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 247; Significance: 1e-137; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 17 - 279
Target Start/End: Original strand, 46166426 - 46166688
Alignment:
| Q |
17 |
ataaggctcgttagctgctatttcaactcatctatgattaattatgcatgtgcataaaaagaggggcaaaggcatggggggctgagctagcatatagtat |
116 |
Q |
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| T |
46166426 |
ataaggctcgttagctgctatttcaactcatctatgattaattatgcatgtgcataaaaagaggggcaaaggcatggggggctgagctagcatatagtat |
46166525 |
T |
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| Q |
117 |
tgcaaatctccctccgccctacccttgcatttggcccaaacgtgtgttaggccaaactgtttgttatgggggcgacaaccccgcggtactgtttaggagt |
216 |
Q |
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| T |
46166526 |
tgcaaatatccctccgccctacccttgcatttggcccaaacgtgtgttaggccaaactgtttgttgtgggggcgacaaccccgcagtactgtttaggagt |
46166625 |
T |
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| Q |
217 |
attcttgtaatttgaaccgtaatattatatatgtcttgtaacgctctaaaccctaattcattt |
279 |
Q |
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| T |
46166626 |
attcttgtaatttgaaccgtaatattatatatgtcttgtaacgctataaaccctaattcattt |
46166688 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 82 - 238
Target Start/End: Original strand, 46159596 - 46159751
Alignment:
| Q |
82 |
gcaaaggcatggggggctgagctagcatatagtattgcaaatctccctccgccc-tacccttgcatttggcccaaacgtgtgttaggccaaactgtttgt |
180 |
Q |
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| T |
46159596 |
gcaaaggcctggggagctgagctagcata--gtggtgcaaatctccctctgcccctggccttgcatttggcccaaacgtgcgatatgc-aaactgtttgt |
46159692 |
T |
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| Q |
181 |
tatgggggcgacaa-ccccgcggtactgtttaggagtattcttgtaatttgaaccgtaa |
238 |
Q |
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| T |
46159693 |
tacgggggcgacaacccccgcagtactgctccagagtattgttgtaatccgaaccgtaa |
46159751 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 140 - 177
Target Start/End: Complemental strand, 21399875 - 21399838
Alignment:
| Q |
140 |
cttgcatttggcccaaacgtgtgttaggccaaactgtt |
177 |
Q |
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| T |
21399875 |
cttgcatttggcccaaacgtgtgttaggccaaactgtt |
21399838 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 37 - 110
Target Start/End: Original strand, 46159518 - 46159590
Alignment:
| Q |
37 |
tttcaactcatctatgattaattatgcatgtgcataaaaagaggggcaaaggcatggggggctgagctagcata |
110 |
Q |
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| T |
46159518 |
tttcaactcatctatgattgattatgcatgttca-gaaaagaggtgcaaaggcctgtggagctgagctagcata |
46159590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0771 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0771
Description:
Target: scaffold0771; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 169
Target Start/End: Original strand, 3203 - 3249
Alignment:
| Q |
124 |
ctccctccgccc-tacccttgcatttggcccaaacgtgtgttaggcc |
169 |
Q |
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| T |
3203 |
ctccctccgcccctacccttgcgtttgacccaaacgtgtgttaggcc |
3249 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 169
Target Start/End: Original strand, 13951063 - 13951109
Alignment:
| Q |
124 |
ctccctccgccc-tacccttgcatttggcccaaacgtgtgttaggcc |
169 |
Q |
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| T |
13951063 |
ctccctccgcccctacccttgcgtttgacccaaacgtgtgttaggcc |
13951109 |
T |
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