View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2510_low_22 (Length: 245)
Name: NF2510_low_22
Description: NF2510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2510_low_22 |
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Alignment Details
Target: chr2 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 13120715 - 13120946
Alignment:
| Q |
1 |
tcaacaaccatggcaacgggaagcaagatttctcccgtgcaaagatcaacagtggagcaaactccggtgaccggaataggtaccacaccgcaaacaacta |
100 |
Q |
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| T |
13120715 |
tcaacaaccatggcaacgggaagcaagatttctcccgtgcaaagatcaacagtggagcaaactccggtgaccggaataggtaccacaccgcaaaca-cta |
13120813 |
T |
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| Q |
101 |
cggtggtcgcaccataaataatagggggagcactttcaatggtcatggtaatggtagcattattgatggtgactttaatgcctccacaacaaactacaac |
200 |
Q |
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| T |
13120814 |
cggtggtcgcaccataaataatagggggagcactttcaatggtcatggtaatggtagcattattgatggtgactttaatgcctccacaacaaactacaac |
13120913 |
T |
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| Q |
201 |
cattgaattatgtattgatacatatatgatgtg |
233 |
Q |
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| T |
13120914 |
cattgaattatgtattgatacatatatgatgtg |
13120946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 200
Target Start/End: Original strand, 13122871 - 13123068
Alignment:
| Q |
3 |
aacaaccatggcaacgggaagcaagatttctcccgtgcaaagatcaacagtggagcaaactccggtgaccggaataggtaccacaccgcaaacaactacg |
102 |
Q |
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| T |
13122871 |
aacaaccatggcaacggggaccaaaatttctccggtgccaaaatcaatgccggtgcaaattccggtgaccgtaacaaacaccgcaccaccaatagttatg |
13122970 |
T |
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| Q |
103 |
gtggtcgcaccataaataatagggggagcactttcaatggtcatggtaatggtagcattattgatggtgactttaatgcctccacaacaaactacaac |
200 |
Q |
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| T |
13122971 |
gtggccgcactattaataacaagggtaatactttcaatggtcatggcaatggagggtttattgatggtaactttgatgcctccacaaagaactacaac |
13123068 |
T |
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