View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2510_low_3 (Length: 469)
Name: NF2510_low_3
Description: NF2510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2510_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 14 - 451
Target Start/End: Original strand, 7464581 - 7465021
Alignment:
| Q |
14 |
atgaattggcacatgcctttgtttggctgtttttaaataattttactgttactagcaactatttgtaatcttcattattcaattttatatagaagctaat |
113 |
Q |
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| T |
7464581 |
atgaatgggcacatgcctttgtttggatgtttttaaataattttactgttactagcaactatttgtaatcttcattattcaattttatatagaagctaat |
7464680 |
T |
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| Q |
114 |
agagaagcccttaataaaaaa--tgtaaagtaaagcttaattttttatnnnnnnnnca-taaactaacaagaatgtgacaatgttggggaaacaaggttg |
210 |
Q |
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| T |
7464681 |
agagaagccctagataaaaaaaatgtaaagtaaagcttaattttttataaaaaaaaaaataaactaacaagaatgtgacaatgttggggaaacaaggttg |
7464780 |
T |
|
| Q |
211 |
gaagtttatgaccaatctggatactatagtaaaaagaattttcgaagtcataaatttcctacatgatgannnnnnnagaagcggtcttgggacacaatcc |
310 |
Q |
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| T |
7464781 |
gaagtttatgaccaacctggatactatagtaaaaagaattttcgaagtcataaatttcctacatgaggatttttttagaagcggtcttgggacacaatcc |
7464880 |
T |
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| Q |
311 |
acgttatgtttagcatagtacatggtcgacccaaatggtgctgcaggagatcgacgatggaagattggttaagaaaagcggaggctcttgctattgctat |
410 |
Q |
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| T |
7464881 |
acgttatgtttagcatagtacatggtcgacccaaatggtgctgcaggagatcgacgatggaagattggttaagaaaagcggaggctcttgctattgctat |
7464980 |
T |
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| Q |
411 |
tgcaacatcaaggacaagtaacattcagagcatggtggttc |
451 |
Q |
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| T |
7464981 |
tgcaacatcaaggacaagtaacattcagagcatggtggttc |
7465021 |
T |
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Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 189 - 237
Target Start/End: Complemental strand, 50316297 - 50316249
Alignment:
| Q |
189 |
caatgttggggaaacaaggttggaagtttatgaccaatctggatactat |
237 |
Q |
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| T |
50316297 |
caatgttgaggaatcaaggttggaaatttatgaccaagctggatactat |
50316249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 189 - 225
Target Start/End: Complemental strand, 10873975 - 10873939
Alignment:
| Q |
189 |
caatgttggggaaacaaggttggaagtttatgaccaa |
225 |
Q |
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| T |
10873975 |
caatgttggggaaacaaggttggcagttcatgaccaa |
10873939 |
T |
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