View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2510_low_5 (Length: 410)
Name: NF2510_low_5
Description: NF2510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2510_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 195; Significance: 1e-106; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 3 - 359
Target Start/End: Complemental strand, 11817915 - 11817560
Alignment:
| Q |
3 |
tgggtagattatactttaaaaatgaacaagtataaaataaaattattgagtgaaacaaaactcgaggatgatacatgatatgaatggccaacaatccttt |
102 |
Q |
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| T |
11817915 |
tgggtaaattataatttaaaaatgaacaagtataaaataaaattattgagtgaaaccaaactcgaggatgatacatgatatgaatggccaagaatcctcc |
11817816 |
T |
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| Q |
103 |
gctattgtcttgtgtggacaaataatgtaaatggtaactgtgttgctaactctcatgccatccaattgccatcnnnnnnnnnnnnnnnctgtttnnnnnn |
202 |
Q |
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| T |
11817815 |
gcta-tgtcttgtgtggacaaataatgtaattggtaactgtgttgctaattctcatgccatccaattgccatctttttggttttttttctgtttaaaaaa |
11817717 |
T |
|
| Q |
203 |
ngaataggatcaatgacgttattctttcctaaaacgcatgttttttaattaacacgttttgcctgaaaaataaatattagttt-tcnnnnnnntatatat |
301 |
Q |
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||||||||||||||| ||||||||||||||||||| || |||||||||||||||||||||||||||||||| |||||||||| ||||||| |
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| T |
11817716 |
agaataggatcaatgatgttattctttcctaaaacggat-ttttttaattaacacgttttgcctgaaaaatagatattagtttaaaaaaaaaatatatat |
11817618 |
T |
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| Q |
302 |
atttggagaagtaaagatatttttatcaacacaaagcataagacatagtgagtgtaaa |
359 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11817617 |
atttggagaagtaaagatatttttatcaacacaaagcataagacatagtgagtgtaaa |
11817560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 223 - 286
Target Start/End: Complemental strand, 11822629 - 11822566
Alignment:
| Q |
223 |
attctttcctaaaacgcatgttttttaattaacacgttttgcctgaaaaataaatattagtttt |
286 |
Q |
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| T |
11822629 |
attctttcctaaaaaagatgtttttcaattaacacgttttgcttgaaaaatagatattaatttt |
11822566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 359 - 392
Target Start/End: Complemental strand, 11821986 - 11821953
Alignment:
| Q |
359 |
aatcattacagccagcttcacaaaaggttgggaa |
392 |
Q |
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||||||||||||||||||||||||||||| |||| |
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| T |
11821986 |
aatcattacagccagcttcacaaaaggttaggaa |
11821953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 35 - 71
Target Start/End: Complemental strand, 11817993 - 11817957
Alignment:
| Q |
35 |
taaaataaaattattgagtgaaacaaaactcgaggat |
71 |
Q |
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||||||||||| ||||| ||||||||||||||||||| |
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| T |
11817993 |
taaaataaaatgattgaatgaaacaaaactcgaggat |
11817957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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