View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2510_low_8 (Length: 390)
Name: NF2510_low_8
Description: NF2510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2510_low_8 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 11 - 390
Target Start/End: Original strand, 30276491 - 30276870
Alignment:
| Q |
11 |
catcatcactattagttagggattcatcttcatatgcagattctaggagttgtaaggcttcatctagtttgttttctgacatgagaatatccagtttttc |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30276491 |
catcatcactattagttagggattcatcttcatatgcagactctaggagttgtaaggcttcatctagtttgttttctgacatgagaatatccagtttttc |
30276590 |
T |
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| Q |
111 |
tgaaacatcattgataagagcttctaattcgcttggcggagatggtacgacaaaatctatagattcttcaagggttgagtttatggacaatatcttagga |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30276591 |
tgaaacatcattgataagagcttctaattcgcttggcggagatggtacgacaaaatctatagattcttcaagggttgagtttatggacaatatcttagga |
30276690 |
T |
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| Q |
211 |
tatatgcgatctttaagatctttgactaacatttgatgggataagaagtgactttctaggtgcacaagctcattttccactcctgccacttcctctagta |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| ||||||||||||||| |||||||||| |||||||||||||| |
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| T |
30276691 |
tatatgcgatctttaagatctttgactaacatttgatgggataagaagtgattctctaagtgcacaagctcattctccactcctgtcacttcctctagta |
30276790 |
T |
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| Q |
311 |
ttctacacatgagaaaacaaagataagtacctcaacattatatgccattcaacaataaaaagaataaagattagaaatct |
390 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30276791 |
ttctacacatgagaaaacaaagataagtacctcaacattatatgccattcaacaataaaaagaataaagattagaaatct |
30276870 |
T |
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