View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2510_low_9 (Length: 388)
Name: NF2510_low_9
Description: NF2510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2510_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 1 - 384
Target Start/End: Original strand, 49214683 - 49215066
Alignment:
| Q |
1 |
tgaaggatattatattatcagcaatatgaagaaccagaaatctcacaaacaagttgaaatatgcccttagagaaacaatacaatgaaattagtaggattt |
100 |
Q |
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| T |
49214683 |
tgaaggatattatattatcagcaatatgaagaaccagaaatctcacaaacaagttgaaatatgcccttagagaaacaatacaatgaaattagtaggattt |
49214782 |
T |
|
| Q |
101 |
ggatttgctggagtaacaaattccacacagtcagcacatcggtggccgttgaatcatgacaggacaatctagatttcaagctcaatatttaacagtttnn |
200 |
Q |
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| T |
49214783 |
ggatttgctggagtaacaaattccacacagtcagcacatcggtggccgttgaatcatgacaggacaatctagatttcaagctcaatatttaagagtttaa |
49214882 |
T |
|
| Q |
201 |
nnnnnntaaatcataatctgctactttctccatcgtctgatctcggtccaatggtcaccgttgtgactacagcaaatctgaattagagatcttacctctg |
300 |
Q |
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| T |
49214883 |
aaaaaataaatcataatctgctactttctccatcgtctgatctcggtccaattgtcaccgttgtgaccacagcaaatccgaattagagatcttacctctg |
49214982 |
T |
|
| Q |
301 |
ttctaccaggcataataggctttccagccaataattcagcaagaatacagccagcactccaaaggtcgattcctacacaataat |
384 |
Q |
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| T |
49214983 |
ttctaccaggcataataggccttccagccaataattcagcaagaatacagccagcactccaaaggtcgattcctacaccataat |
49215066 |
T |
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Target: chr2 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 292 - 367
Target Start/End: Complemental strand, 6701511 - 6701436
Alignment:
| Q |
292 |
ttacctctgttctaccaggcataataggctttccagccaataattcagcaagaatacagccagcactccaaaggtc |
367 |
Q |
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| T |
6701511 |
ttacctctgttcgaccaggcatgatgggttttccagccaacaattctgcaagaatgcagccagcactccagaggtc |
6701436 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 293 - 361
Target Start/End: Complemental strand, 1966625 - 1966557
Alignment:
| Q |
293 |
tacctctgttctaccaggcataataggctttccagccaataattcagcaagaatacagccagcactcca |
361 |
Q |
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|||||||||||| |||||||| |||||||| || |||| |||||||| ||||| || ||||||||||| |
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| T |
1966625 |
tacctctgttcttccaggcatgataggcttacccaccaacaattcagctagaatgcaaccagcactcca |
1966557 |
T |
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