View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2511_low_1 (Length: 486)
Name: NF2511_low_1
Description: NF2511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2511_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 13 - 400
Target Start/End: Complemental strand, 54745906 - 54745519
Alignment:
| Q |
13 |
ataggaggaatgaaaaaagtgaatggaattgtcggggaagagtctcccataaaaagacccaggtgttccactaaagaaacatggactaaacttttgtcct |
112 |
Q |
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| T |
54745906 |
ataggaggaatgaaaaaagtgaatggaattgtcggggaagagtctcccataaaaagacccaggtgttccactaaagaaacatggactaaacttttgtcct |
54745807 |
T |
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| Q |
113 |
ttctcttcttgtagtatttttataaaatcagggagtaacttaaaagtggtattgaagtcatttccaaataggtcattgaggaaaaactgaaacatgggtg |
212 |
Q |
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| T |
54745806 |
ttctcttcttgtagtctttttataaaatcaggtagtaacttaaaagtggtattgaagtcatttccaaataggtcattgaggaaaaactgaaacatgggtg |
54745707 |
T |
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| Q |
213 |
actcatgactcaatttttgactcacagcatcaatagtgtttatgatatttgatgcaaccaaaagtgcatttggacctgatgaacaacctaagtcagccac |
312 |
Q |
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| T |
54745706 |
actcatgactcaatttttgactcacagcatcaatagtgtttatgatatttgatgctaccaaaagtgcatttggacctgatgaacaacctaagtcagccac |
54745607 |
T |
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| Q |
313 |
tttcaaacaatttggaaaagtgtcacaatacagcctcattatactctcttcaagtatatgttttgccgtcagcatcaccattctctgc |
400 |
Q |
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| T |
54745606 |
tttcaaacaatttggaaaagtgtcacaatacagcctcattatactctcttcaagtatatgttttgccgtcagcatcaccattctctgc |
54745519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 254 - 303
Target Start/End: Complemental strand, 32551628 - 32551579
Alignment:
| Q |
254 |
atgatatttgatgcaaccaaaagtgcatttggacctgatgaacaacctaa |
303 |
Q |
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| T |
32551628 |
atgatatttgagacaaccaaaagtgcatttggtcctgaagaacaacctaa |
32551579 |
T |
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