View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2511_low_2 (Length: 471)

Name: NF2511_low_2
Description: NF2511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2511_low_2
NF2511_low_2
[»] chr4 (8 HSPs)
chr4 (24-346)||(49542120-49542444)
chr4 (40-182)||(40918457-40918602)
chr4 (365-461)||(49541967-49542063)
chr4 (40-180)||(41783217-41783354)
chr4 (81-182)||(53729660-53729761)
chr4 (197-244)||(40918346-40918393)
chr4 (415-461)||(40917436-40917482)
chr4 (180-236)||(41783112-41783168)
[»] chr8 (7 HSPs)
chr8 (40-182)||(2882954-2883099)
chr8 (40-182)||(3151462-3151601)
chr8 (40-100)||(2873230-2873290)
chr8 (415-461)||(2883859-2883905)
chr8 (415-461)||(3150661-3150707)
chr8 (194-252)||(2883157-2883215)
chr8 (194-249)||(3151349-3151404)
[»] chr1 (2 HSPs)
chr1 (40-132)||(1086644-1086736)
chr1 (420-461)||(1086769-1086810)
[»] chr7 (2 HSPs)
chr7 (415-461)||(29251360-29251406)
chr7 (180-236)||(29250726-29250782)


Alignment Details
Target: chr4 (Bit Score: 302; Significance: 1e-170; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 24 - 346
Target Start/End: Complemental strand, 49542444 - 49542120
Alignment:
Q  24 tcctcctcgacaatgttttctcgcaaggtttttactaggtttaaagtgcgtgggttctcatcatcttcttcttctcc--tcccgaggtatcagtatggtg 121  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||    
T  49542444 tcctcctcgacaatgttttctcgcaaggtttttactaggtttaaagtgcgtgggttctcatcatcttcttcttctcccctcccgaggtatcagtatggtg 49542345  T
Q  122 gcaccttgacagctgtcccgtgccttctgggtttagcttttccaaggtagcaccttcaattttaattctttagatgtcgacaaagaggctcttatttcaa 221  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||    
T  49542344 gcaccttgacagctgtcccgtgccttctgggtttagcttttccaaggtagcaccttcaattttaattcttcaaatgtcgacaaagaggctcttatttcaa 49542245  T
Q  222 acaacattactctaccctcctttaccgacgaatacactgctactcgcatgcacaaaatatataccggttcgtcccttccttttccactctattattctgt 321  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  49542244 acaacattactctaccctcctttaccgacgaatacactgctactcgcatgcacaaaatatataccggttcgttccttccttttccactctattattctgt 49542145  T
Q  322 tcttgtcaaaattcatcatgtctag 346  Q
    |||||||||||||||||||||||||    
T  49542144 tcttgtcaaaattcatcatgtctag 49542120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 40 - 182
Target Start/End: Complemental strand, 40918602 - 40918457
Alignment:
Q  40 tttctcgcaaggtttttactaggtttaaagtgcgtgggttctcatcatcttcttcttctcctcccgaggt------atcagtatggtggcaccttgacag 133  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||| |||||||   |||||| ||||      |||||||||||||||| |||||||    
T  40918602 tttctcgcaaggtttttactacgtttaaagtgcgtgggttctcatcatattcttct---cctcccaaggtttcagtatcagtatggtggcacattgacag 40918506  T
Q  134 ctgtcccgtgccttctgggtttagcttttccaaggtagcaccttcaatt 182  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||    
T  40918505 ctgtcccgtgccctctgggtttagcttttccaaggtagcaccttcaatt 40918457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 365 - 461
Target Start/End: Complemental strand, 49542063 - 49541967
Alignment:
Q  365 ttaggacttagtaatcaaatgtttctttcacttttcaattaataatgacgccataggagatcttcgtgcagagttgacaaactctgatatgcctttg 461  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  49542063 ttaggacttagtaatcaaatgtttctttcacttttcaaataataatgacgccataggagatcttcgtgcagagttgacaaactgtgatatgcctttg 49541967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 40 - 180
Target Start/End: Complemental strand, 41783354 - 41783217
Alignment:
Q  40 tttctcgcaaggtttttactaggtttaaagtgcgtgggttctcatcatcttcttcttctcctcccgaggtatcagtatggtggcaccttgacagctgtcc 139  Q
    ||||||||||||||||||| ||  || ||||| ||  |||||||||||||||||||| ||||   ||||| |||||||||||||||||||||||||||      
T  41783354 tttctcgcaaggtttttaccagaattcaagtgggtcagttctcatcatcttcttcttttcct---gaggtttcagtatggtggcaccttgacagctgtgt 41783258  T
Q  140 cgtgccttctgggtttagcttttccaaggtagcaccttcaa 180  Q
    ||||||||||||| |||||| ||| ||||||||||||||||    
T  41783257 cgtgccttctgggattagctattcgaaggtagcaccttcaa 41783217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 81 - 182
Target Start/End: Original strand, 53729660 - 53729761
Alignment:
Q  81 tcatcatcttcttcttctcctcccgaggtatcagtatggtggcaccttgacagctgtcccgtgccttctgggtttagcttttccaaggtagcaccttcaa 180  Q
    |||||||| |||||||||  ||| ||||| ||||||||||||||||||||||||| |||||||||||||||| |||||| ||| ||||||| ||||||||    
T  53729660 tcatcatcatcttcttcttttcctgaggtttcagtatggtggcaccttgacagctctcccgtgccttctggggttagctattcgaaggtagaaccttcaa 53729759  T
Q  181 tt 182  Q
    ||    
T  53729760 tt 53729761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 197 - 244
Target Start/End: Complemental strand, 40918393 - 40918346
Alignment:
Q  197 gtcgacaaagaggctcttatttcaaacaacattactctaccctccttt 244  Q
    ||||||||||||||||||| ||||| |||||||||||||| |||||||    
T  40918393 gtcgacaaagaggctcttaattcaaccaacattactctacactccttt 40918346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 415 - 461
Target Start/End: Complemental strand, 40917482 - 40917436
Alignment:
Q  415 ccataggagatcttcgtgcagagttgacaaactctgatatgcctttg 461  Q
    ||||||||||||||||||||||||||||||| | |||| ||||||||    
T  40917482 ccataggagatcttcgtgcagagttgacaaagtgtgatgtgcctttg 40917436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 180 - 236
Target Start/End: Complemental strand, 41783168 - 41783112
Alignment:
Q  180 attttaattctttagatgtcgacaaagaggctcttatttcaaacaacattactctac 236  Q
    ||||||||||||  || ||||||||||||||||||| ||||| |||| || ||||||    
T  41783168 attttaattcttctgaggtcgacaaagaggctcttaattcaaccaacttttctctac 41783112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 116; Significance: 8e-59; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 40 - 182
Target Start/End: Original strand, 2882954 - 2883099
Alignment:
Q  40 tttctcgcaaggtttttactaggtttaaagtgcgtgggttctcat---catcttcttcttctcctcccgaggtatcagtatggtggcaccttgacagctg 136  Q
    |||||||||||||||||||||||||||||| ||||||||||||||   ||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  2882954 tttctcgcaaggtttttactaggtttaaagggcgtgggttctcatcatcatcttcttcttctcctcccgaggtttcagtatggtggcaccttgacagctg 2883053  T
Q  137 tcccgtgccttctgggtttagcttttccaaggtagcaccttcaatt 182  Q
    ||||||||| || |||||||||||||||||||||||||||||||||    
T  2883054 tcccgtgccctcagggtttagcttttccaaggtagcaccttcaatt 2883099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 40 - 182
Target Start/End: Complemental strand, 3151601 - 3151462
Alignment:
Q  40 tttctcgcaaggtttttactaggtttaaagtgcgtgggttctcatcatcttcttcttctcctcccgaggtatcagtatggtggcaccttgacagctgtcc 139  Q
    |||||||||||||||||| ||||||||||| |||||||||||||||||||||||||   ||||||||||| |||||||||||||||||||||||||||||    
T  3151601 tttctcgcaaggtttttattaggtttaaagggcgtgggttctcatcatcttcttct---cctcccgaggtttcagtatggtggcaccttgacagctgtcc 3151505  T
Q  140 cgtgccttctgggtttagcttttccaaggtagcaccttcaatt 182  Q
    |||||| ||||||||||||||||||||||||||||||||||||    
T  3151504 cgtgccctctgggtttagcttttccaaggtagcaccttcaatt 3151462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 40 - 100
Target Start/End: Original strand, 2873230 - 2873290
Alignment:
Q  40 tttctcgcaaggtttttactaggtttaaagtgcgtgggttctcatcatcttcttcttctcc 100  Q
    |||||||||||||||||||||||||||||| | |||||||||||||||| |||||| ||||    
T  2873230 tttctcgcaaggtttttactaggtttaaagggtgtgggttctcatcatcatcttctcctcc 2873290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 415 - 461
Target Start/End: Original strand, 2883859 - 2883905
Alignment:
Q  415 ccataggagatcttcgtgcagagttgacaaactctgatatgcctttg 461  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||    
T  2883859 ccataggagatcttcgtgcagagttgacaaactgtgatatgcctttg 2883905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 415 - 461
Target Start/End: Complemental strand, 3150707 - 3150661
Alignment:
Q  415 ccataggagatcttcgtgcagagttgacaaactctgatatgcctttg 461  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||    
T  3150707 ccataggagatcttcgtgcagagttgacaaactgtgatatgcctttg 3150661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 194 - 252
Target Start/End: Original strand, 2883157 - 2883215
Alignment:
Q  194 gatgtcgacaaagaggctcttatttcaaacaacattactctaccctcctttaccgacga 252  Q
    |||||||||||||||||| ||| ||||| |||||||||||||| ||||||| |||||||    
T  2883157 gatgtcgacaaagaggcttttaattcaaccaacattactctacactccttttccgacga 2883215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 194 - 249
Target Start/End: Complemental strand, 3151404 - 3151349
Alignment:
Q  194 gatgtcgacaaagaggctcttatttcaaacaacattactctaccctcctttaccga 249  Q
    |||||||||||||||||| ||| ||||| |||||||||||||| ||||||| ||||    
T  3151404 gatgtcgacaaagaggcttttaattcaaccaacattactctacactccttttccga 3151349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 61; Significance: 5e-26; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 40 - 132
Target Start/End: Original strand, 1086644 - 1086736
Alignment:
Q  40 tttctcgcaaggtttttactaggtttaaagtgcgtgggttctcatcatcttcttcttctcctcccgaggtatcagtatggtggcaccttgaca 132  Q
    |||||||||||||||||||||||||| ||||| ||||||||||||||||||| ||||||  ||| | ||| ||||||||||||||||||||||    
T  1086644 tttctcgcaaggtttttactaggtttcaagtgtgtgggttctcatcatcttcatcttcttttccagtggtttcagtatggtggcaccttgaca 1086736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 420 - 461
Target Start/End: Original strand, 1086769 - 1086810
Alignment:
Q  420 ggagatcttcgtgcagagttgacaaactctgatatgcctttg 461  Q
    |||||||||||||||||||||||||| | |||| ||||||||    
T  1086769 ggagatcttcgtgcagagttgacaaagtgtgatctgcctttg 1086810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 415 - 461
Target Start/End: Original strand, 29251360 - 29251406
Alignment:
Q  415 ccataggagatcttcgtgcagagttgacaaactctgatatgcctttg 461  Q
    |||| |||||||||||||||||||||||||| | |||| ||||||||    
T  29251360 ccatcggagatcttcgtgcagagttgacaaagtgtgatctgcctttg 29251406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 180 - 236
Target Start/End: Original strand, 29250726 - 29250782
Alignment:
Q  180 attttaattctttagatgtcgacaaagaggctcttatttcaaacaacattactctac 236  Q
    ||||||||||||  || ||||||||||||||||||| |||||  |||||| ||||||    
T  29250726 attttaattcttctgaggtcgacaaagaggctcttaattcaacaaacatttctctac 29250782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University