View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2511_low_5 (Length: 309)
Name: NF2511_low_5
Description: NF2511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2511_low_5 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 17 - 309
Target Start/End: Original strand, 27745173 - 27745461
Alignment:
| Q |
17 |
aaaactgacttgttccgtgacacattggcctgaatggcatatagataaagctcttcgatttgatttcagcttgaatattcaagcataactttataataat |
116 |
Q |
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| T |
27745173 |
aaaactgacttgtgccgtgacacattggcctgaatggcatatagataaagctcttcaatttgatttcagcttgaat---caagcataactttataataat |
27745269 |
T |
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| Q |
117 |
aataattttatcagtttcatagtgcttcttaccaacatttagaattgaagattgttgaacatccttttaagcattcattgtatcattctgtaagtattgc |
216 |
Q |
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| T |
27745270 |
aataattttatcagtttcatagtgcttcttaccaacatttagaattgaagattgttgaacttccttttaagcattcattgtatcattctgtaagtattgc |
27745369 |
T |
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| Q |
217 |
atggtgttccaagcttactttaacactgaagagtaatgtgtaaacatggtgactaagaaaatatcgttcttttttcttcttcctacctttctt |
309 |
Q |
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| T |
27745370 |
atggtgttccaagcttactttaacactgaagagtaatgtgtaaacatggagactta-aaaatatcgttcttttttcttcttcatacctttctt |
27745461 |
T |
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Target: chr3 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 149 - 306
Target Start/End: Original strand, 49513670 - 49513827
Alignment:
| Q |
149 |
caacatttagaattgaagattgttgaacatccttttaagcattcattgtatcattctgtaagtattgcatggtgttccaagcttactttaacactgaaga |
248 |
Q |
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| T |
49513670 |
caacatttggaatttaatattgttaaacttccctttaagaattcattatatcaagctgtaagtattgcatgatgttccaaacatactttaacactcaaaa |
49513769 |
T |
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| Q |
249 |
gtaatgtgtaaacatggtgactaagaaaatatcgttcttttttcttcttcctaccttt |
306 |
Q |
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| T |
49513770 |
gtaatgtgtaaacatggtgaataagacaacatcattcttttttcttcttcctaccttt |
49513827 |
T |
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