View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2511_low_6 (Length: 284)
Name: NF2511_low_6
Description: NF2511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2511_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 158; Significance: 4e-84; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 8 - 238
Target Start/End: Original strand, 26955784 - 26956012
Alignment:
| Q |
8 |
tctttcttatgatcttctccataactctttcttatggagctttttcacccttctcatctgttacatccattcatttttctccttcttccactttgattcg |
107 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26955784 |
tctttcgtatgatcttctccataactctttcttatggagctttttcacccttcccatctgttacatccattcatttttctccttcttccactttgattcg |
26955883 |
T |
|
| Q |
108 |
aaaatcatctacgccatgtcccttctgattcctttctctcctccgcgccaacca---cccctccaccgcccgcggcttctccaaacaagatctcgccgat |
204 |
Q |
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|||||||| ||||||||| |||||||||||| |||||||||||||||||||| ||||||||| |||||| |||||||||||||||| || ||||| |
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| T |
26955884 |
aaaatcataaacgccatgt-ccttctgattcc--tctctcctccgcgccaaccacctcccctccactgcccgccgcttctccaaacaagaact--ccgat |
26955978 |
T |
|
| Q |
205 |
gaagctctcttctatggtattgacaatcacctcc |
238 |
Q |
| |
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||||||||||||||||||||||||||||||||| |
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| T |
26955979 |
aaagctctcttctatggtattgacaatcacctcc |
26956012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 158; Significance: 4e-84; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 8 - 238
Target Start/End: Original strand, 40947054 - 40947282
Alignment:
| Q |
8 |
tctttcttatgatcttctccataactctttcttatggagctttttcacccttctcatctgttacatccattcatttttctccttcttccactttgattcg |
107 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40947054 |
tctttcgtatgatcttctccataactctttcttatggagctttttcacccttcccatctgttacatccattcatttttctccttcttccactttgattcg |
40947153 |
T |
|
| Q |
108 |
aaaatcatctacgccatgtcccttctgattcctttctctcctccgcgccaacca---cccctccaccgcccgcggcttctccaaacaagatctcgccgat |
204 |
Q |
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| T |
40947154 |
aaaatcataaacgccatgt-ccttctgattcc--tctctcctccgcgccaaccacctcccctccactgcccgccgcttctccaaacaagaact--ccgat |
40947248 |
T |
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| Q |
205 |
gaagctctcttctatggtattgacaatcacctcc |
238 |
Q |
| |
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||||||||||||||||||||||||||||||||| |
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| T |
40947249 |
aaagctctcttctatggtattgacaatcacctcc |
40947282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 136 - 228
Target Start/End: Original strand, 34314981 - 34315076
Alignment:
| Q |
136 |
ttcctttctctcctccgcgccaaccacc---cctccaccgcccgcggcttctccaaacaagatctcgccgatgaagctctcttctatggtattgac |
228 |
Q |
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||||| |||||||||||| ||||||||| ||||||| |||||| |||||||||||||||| |||||||| |||||||||||||||||||||||| |
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| T |
34314981 |
ttcctctctctcctccgcaccaaccaccttccctccactgcccgccgcttctccaaacaagaactcgccgacgaagctctcttctatggtattgac |
34315076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 140
Target Start/End: Original strand, 33854039 - 33854183
Alignment:
| Q |
8 |
tctttcttatgatcttctccataactctttcttatggagctttttcacccttctcatctgttacatccattcatttttctcc-------------ttctt |
94 |
Q |
| |
|
|||||||| ||||||||| ||| ||||||| |||||||| |||||||||||| |||||||||| ||||||||| |||||| ||| | |
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| T |
33854039 |
tctttcttgtgatcttcttcatcgctctttcgtatggagccttttcacccttc-catctgttactgccattcattcttctccaatttctatcaccttcgt |
33854137 |
T |
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| Q |
95 |
ccactttgattcgaaaatcatctacgccatgtcccttctgattcct |
140 |
Q |
| |
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|||||||||||| ||||||||| || ||||||||||||| |||||| |
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| T |
33854138 |
ccactttgattctaaaatcatcaacaccatgtcccttctaattcct |
33854183 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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