View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2512_high_15 (Length: 502)
Name: NF2512_high_15
Description: NF2512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2512_high_15 |
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Alignment Details
Target: chr3 (Bit Score: 474; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 474; E-Value: 0
Query Start/End: Original strand, 19 - 492
Target Start/End: Original strand, 9835929 - 9836402
Alignment:
| Q |
19 |
ttttcgaaagtcaaatgatattcctcttgttttagtacaaggctgtgcatgttaatactttaaattgttttctttagatatatacatagcttaatttcaa |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9835929 |
ttttcgaaagtcaaatgatattcctcttgttttagtacaaggctgtgcatgttaatactttaaattgttttctttagatatatacatagcttaatttcaa |
9836028 |
T |
|
| Q |
119 |
tgacctattttatagctgttcgagcggaggcctcagcttcagaggaaagatttggatacggttctgggctagatcttgatttattgggtattgaaatcga |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9836029 |
tgacctattttatagctgttcgagcggaggcctcagcttcagaggaaagatttggatacggttctgggctagatcttgatttattgggtattgaaatcga |
9836128 |
T |
|
| Q |
219 |
cgagaagaccttgatcccaggattggctgttgcatcttctcgtgctaaaatattatcaggtaagaaactccagttttcatattttgttcatatatattat |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9836129 |
cgagaagaccttgatcccaggattggctgttgcatcttctcgtgctaaaatattatcaggtaagaaactccagttttcatattttgttcatatatattat |
9836228 |
T |
|
| Q |
319 |
attattttcttcacaacagattcattgtaactataattaaaaattacctaggtattaaaaatgacttttatgcactgaattaattagttatcatagtcct |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9836229 |
attattttcttcacaacagattcattgtaactataattaaaaattacctaggtattaaaaatgacttttatgcactgaattaattagttatcatagtcct |
9836328 |
T |
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| Q |
419 |
tcaacaaatttattgaagaattaaaacatttcttgagctcaaaagtattcagcacagaactgcaaatacctatg |
492 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9836329 |
tcaacaaatttattgaagaattaaaacatttcttgagctcaaaagtattcagcacagaactgcaaatacctatg |
9836402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 474; E-Value: 0
Query Start/End: Original strand, 19 - 492
Target Start/End: Original strand, 9846807 - 9847280
Alignment:
| Q |
19 |
ttttcgaaagtcaaatgatattcctcttgttttagtacaaggctgtgcatgttaatactttaaattgttttctttagatatatacatagcttaatttcaa |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9846807 |
ttttcgaaagtcaaatgatattcctcttgttttagtacaaggctgtgcatgttaatactttaaattgttttctttagatatatacatagcttaatttcaa |
9846906 |
T |
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| Q |
119 |
tgacctattttatagctgttcgagcggaggcctcagcttcagaggaaagatttggatacggttctgggctagatcttgatttattgggtattgaaatcga |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9846907 |
tgacctattttatagctgttcgagcggaggcctcagcttcagaggaaagatttggatacggttctgggctagatcttgatttattgggtattgaaatcga |
9847006 |
T |
|
| Q |
219 |
cgagaagaccttgatcccaggattggctgttgcatcttctcgtgctaaaatattatcaggtaagaaactccagttttcatattttgttcatatatattat |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9847007 |
cgagaagaccttgatcccaggattggctgttgcatcttctcgtgctaaaatattatcaggtaagaaactccagttttcatattttgttcatatatattat |
9847106 |
T |
|
| Q |
319 |
attattttcttcacaacagattcattgtaactataattaaaaattacctaggtattaaaaatgacttttatgcactgaattaattagttatcatagtcct |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9847107 |
attattttcttcacaacagattcattgtaactataattaaaaattacctaggtattaaaaatgacttttatgcactgaattaattagttatcatagtcct |
9847206 |
T |
|
| Q |
419 |
tcaacaaatttattgaagaattaaaacatttcttgagctcaaaagtattcagcacagaactgcaaatacctatg |
492 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9847207 |
tcaacaaatttattgaagaattaaaacatttcttgagctcaaaagtattcagcacagaactgcaaatacctatg |
9847280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 229 - 280
Target Start/End: Original strand, 23019513 - 23019564
Alignment:
| Q |
229 |
ttgatcccaggattggctgttgcatcttctcgtgctaaaatattatcaggta |
280 |
Q |
| |
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|||||| ||| | |||| |||||||||||||||||||||||||||||||||| |
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| T |
23019513 |
ttgatcacagaactggccgttgcatcttctcgtgctaaaatattatcaggta |
23019564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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