View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2512_high_16 (Length: 471)

Name: NF2512_high_16
Description: NF2512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2512_high_16
NF2512_high_16
[»] chr3 (4 HSPs)
chr3 (18-462)||(54674662-54675105)
chr3 (71-354)||(41700835-41701111)
chr3 (355-393)||(50940321-50940359)
chr3 (357-393)||(52082794-52082830)
[»] chr1 (6 HSPs)
chr1 (18-462)||(3901185-3901628)
chr1 (18-462)||(50488243-50488685)
chr1 (355-393)||(3900664-3900702)
chr1 (355-393)||(50489168-50489206)
chr1 (351-393)||(52176946-52176987)
chr1 (351-391)||(35153019-35153059)
[»] chr8 (7 HSPs)
chr8 (18-462)||(41410941-41411384)
chr8 (18-439)||(40560603-40561024)
chr8 (351-393)||(27932-27974)
chr8 (355-393)||(4053382-4053420)
chr8 (351-393)||(31943006-31943048)
chr8 (355-393)||(41411867-41411905)
chr8 (357-393)||(19164598-19164634)
[»] chr7 (2 HSPs)
chr7 (18-462)||(36412317-36412760)
chr7 (355-393)||(36413239-36413277)
[»] chr6 (3 HSPs)
chr6 (123-354)||(11148737-11148966)
chr6 (351-396)||(24704501-24704546)
chr6 (357-393)||(19247835-19247871)
[»] chr2 (1 HSPs)
chr2 (18-101)||(10852333-10852416)
[»] chr5 (1 HSPs)
chr5 (355-393)||(9521983-9522021)
[»] chr4 (3 HSPs)
chr4 (357-393)||(4894300-4894336)
chr4 (357-393)||(14254665-14254701)
chr4 (357-393)||(49459711-49459747)


Alignment Details
Target: chr3 (Bit Score: 373; Significance: 0; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 18 - 462
Target Start/End: Original strand, 54674662 - 54675105
Alignment:
Q  18 catcttccataaaccaataaattcatccacaaatcaattatccaccctgaaaatcatccataaacccataatgaatccccaaatccaagaaaaggaatat 117  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |||||||||||||||||| |||||||||| |    
T  54674662 catcttccataaaccaataaattcatccacaaaccaattatccaccctgaaaatcatccctaaacccagaatgaatccccaaatcca-gaaaaggaatct 54674760  T
Q  118 gccacaaactcaatactcatcttcatcccacaaatccccatacccaaattcaaagcaaactacatagtcatcctgaaacccataaattcctaaatcatga 217  Q
    ||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || ||||||||||||    
T  54674761 gccacaaactcaatacttatcttcatcccacaaatccccatacccgaattcaaagcaaactacatagtcatcctgaaacccatatatccctaaatcatga 54674860  T
Q  218 aattctcaattgtttacatgtctccagtgtatttaaatcacgaattggtcaaacccataaactttgaagttggaaatgtctatgagaagggaagaagaag 317  Q
    |||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54674861 aattctcaattgtttacatgtccccagtttatttaaatcacgaatttgtcaaacccataaactttgaagttggaaatgtctatgagaagggaagaagaag 54674960  T
Q  318 agaaaaaagcgatgagttgaaacttgtttaacgaaaattatatttaattcatgttttatttaaaaattataattttcttacatatgacaatcttaccaag 417  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  54674961 agaaaaaagcgatgaattgaaacttgtttaacgaaaattatatttaattcatgttttatttaaaaattataattttcttacacatgacaatcttaccaag 54675060  T
Q  418 actagcttccgttgtatgacaattctccaataactactccctatg 462  Q
    ||||||||||||||||||||||||| |||| |||||||| |||||    
T  54675061 actagcttccgttgtatgacaattccccaagaactactctctatg 54675105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 71 - 354
Target Start/End: Original strand, 41700835 - 41701111
Alignment:
Q  71 tcatccataaacccataatgaatccccaaatccaagaaaaggaatatgccacaaactcaatactcatcttcatcccacaaatccccatacccaaattcaa 170  Q
    |||||| ||||| || ||||||||||||||| || |||||| ||| ||||||||||||||||||||| ||||||||| |||||| |||||||| ||||||    
T  41700835 tcatccctaaacacaaaatgaatccccaaattca-gaaaagaaatctgccacaaactcaatactcattttcatcccagaaatcctcatacccagattcaa 41700933  T
Q  171 agcaaactacatagtcatcctgaaacccataaattcctaaatcatgaaattctcaattgtttacatgtctccagtgtatttaaatcacgaattggtcaaa 270  Q
    |     ||  ||||||||| |||||||||||||| |||||| || |||||||||| ||||| |||||||||| ||  |||||||||||||||| || |||    
T  41700934 a-----ctgtatagtcatcatgaaacccataaatccctaaagcaggaaattctcagttgtt-acatgtctccggttaatttaaatcacgaatttgttaaa 41701027  T
Q  271 cccataaactttgaagttggaaatgtctatgagaagggaagaagaagagaaaaaagcgatgagttgaaacttgtttaacgaaaa 354  Q
    |||||||| ||||||||||||||| | |||||||||||||||||||||| ||||||||||||  |||| || ||||||||||||    
T  41701028 cccataaattttgaagttggaaatttatatgagaagggaagaagaagagcaaaaagcgatgaactgaatctcgtttaacgaaaa 41701111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 355 - 393
Target Start/End: Complemental strand, 50940359 - 50940321
Alignment:
Q  355 ttatatttaattcatgttttatttaaaaattataatttt 393  Q
    |||||||||||||||||||| || |||||||||||||||    
T  50940359 ttatatttaattcatgttttgttaaaaaattataatttt 50940321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 357 - 393
Target Start/End: Complemental strand, 52082830 - 52082794
Alignment:
Q  357 atatttaattcatgttttatttaaaaattataatttt 393  Q
    |||||||||||||||||| || |||||||||||||||    
T  52082830 atatttaattcatgttttgttaaaaaattataatttt 52082794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 365; Significance: 0; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 18 - 462
Target Start/End: Complemental strand, 3901628 - 3901185
Alignment:
Q  18 catcttccataaaccaataaattcatccacaaatcaattatccaccctgaaaatcatccataaacccataatgaatccccaaatccaagaaaaggaatat 117  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| |    
T  3901628 catcttccataaaccaataaattcatccacaaaccaattatccaccctgaaaatcatccctaaacccataatgaatccccaaatcca-gaaaaggaatct 3901530  T
Q  118 gccacaaactcaatactcatcttcatcccacaaatccccatacccaaattcaaagcaaactacatagtcatcctgaaacccataaattcctaaatcatga 217  Q
    ||||||||||||||||| ||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||    
T  3901529 gccacaaactcaatacttatcttcatctcacaaatccccatacccgaattcaaagcacactacatagtcatcctgaaacccataaatccctaaatcatga 3901430  T
Q  218 aattctcaattgtttacatgtctccagtgtatttaaatcacgaattggtcaaacccataaactttgaagttggaaatgtctatgagaagggaagaagaag 317  Q
    |||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3901429 aattctcaattgtttacatgtccccagtttatttaaatcacgaatttgtcaaacccataaactttgaagttggaaatgtctatgagaagggaagaagaag 3901330  T
Q  318 agaaaaaagcgatgagttgaaacttgtttaacgaaaattatatttaattcatgttttatttaaaaattataattttcttacatatgacaatcttaccaag 417  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||    
T  3901329 agaaaaaagcgatgaattgaaacttgtttaacgaaaattatatttaattcatgttttatttaaaaattataattttcttacacatgacaatcttatcaag 3901230  T
Q  418 actagcttccgttgtatgacaattctccaataactactccctatg 462  Q
    | ||||||||||||||||||||||| |||| |||||||| |||||    
T  3901229 attagcttccgttgtatgacaattccccaagaactactctctatg 3901185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 18 - 462
Target Start/End: Original strand, 50488243 - 50488685
Alignment:
Q  18 catcttccataaaccaataaattcatccacaaatcaattatccaccctgaaaatcatccataaacccataatgaatccccaaatccaagaaaaggaatat 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || |||||||||| |    
T  50488243 catcttccataaaccaataaattcatccacaaatcaattatccaccctgaaaatcatccctaaacccataatgaatccccaaattca-gaaaaggaatct 50488341  T
Q  118 gccacaaactcaatactcatcttcatcccacaaatccccatacccaaattcaaagcaaactacatagtcatcctgaaacccataaattcctaaatcatga 217  Q
    ||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||| ||||||||| ||||||||||||    
T  50488342 gccacaaactcaatactcatcttcatctcacaaatccccatacccgaattcaaagcacactacatagtcatcctgaa-cccataaatccctaaatcatga 50488440  T
Q  218 aattctcaattgtttacatgtctccagtgtatttaaatcacgaattggtcaaacccataaactttgaagttggaaatgtctatgagaagggaagaagaag 317  Q
    |||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  50488441 aattctcaattgtttacatgtccccagtttatttaaatcacgaatttgtcaaacccataaactttgaagttgaaaatgtctatgagaagggaagaagaag 50488540  T
Q  318 agaaaaaagcgatgagttgaaacttgtttaacgaaaattatatttaattcatgttttatttaaaaattataattttcttacatatgacaatcttaccaag 417  Q
    |||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||    
T  50488541 agaaaaaagcaatgaattgaaacttgtttaacgaaaattatatttaattcatgttttatttaaaaattataattttcttacacatgacaatcttatcaag 50488640  T
Q  418 actagcttccgttgtatgacaattctccaataactactccctatg 462  Q
    | |||||| |||||||||||||||| |||| |||||||| |||||    
T  50488641 attagcttacgttgtatgacaattccccaagaactactctctatg 50488685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 355 - 393
Target Start/End: Complemental strand, 3900702 - 3900664
Alignment:
Q  355 ttatatttaattcatgttttatttaaaaattataatttt 393  Q
    |||||||||||||||||||| |||||||||| |||||||    
T  3900702 ttatatttaattcatgttttgtttaaaaattctaatttt 3900664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 355 - 393
Target Start/End: Original strand, 50489168 - 50489206
Alignment:
Q  355 ttatatttaattcatgttttatttaaaaattataatttt 393  Q
    |||||||||||||||||||| |||||||||| |||||||    
T  50489168 ttatatttaattcatgttttgtttaaaaattctaatttt 50489206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 351 - 393
Target Start/End: Complemental strand, 52176987 - 52176946
Alignment:
Q  351 aaaattatatttaattcatgttttatttaaaaattataatttt 393  Q
    ||||||||||||||||||||||||  |||||||||||||||||    
T  52176987 aaaattatatttaattcatgtttt-gttaaaaattataatttt 52176946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 351 - 391
Target Start/End: Complemental strand, 35153059 - 35153019
Alignment:
Q  351 aaaattatatttaattcatgttttatttaaaaattataatt 391  Q
    ||||| |||||||||||||||||| || |||||||||||||    
T  35153059 aaaatcatatttaattcatgttttgttaaaaaattataatt 35153019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 357; Significance: 0; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 18 - 462
Target Start/End: Original strand, 41410941 - 41411384
Alignment:
Q  18 catcttccataaaccaataaattcatccacaaatcaattatccaccctgaaaatcatccataaacccataatgaatccccaaatccaagaaaaggaatat 117  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| ||||||||||||||||||  ||||||||| |    
T  41410941 catcttccataaaccaataaattcatccacaaaccaattatccaccctgaaaatcatccctaaacccagaatgaatccccaaatccat-aaaaggaatct 41411039  T
Q  118 gccacaaactcaatactcatcttcatcccacaaatccccatacccaaattcaaagcaaactacatagtcatcctgaaacccataaattcctaaatcatga 217  Q
     |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| ||||    
T  41411040 accacaaactcaatactcatcttcatcccacaaatccccatacccgaattcaaagcaaactacatagtcatcctgaaacccataaatccctaaatgatga 41411139  T
Q  218 aattctcaattgtttacatgtctccagtgtatttaaatcacgaattggtcaaacccataaactttgaagttggaaatgtctatgagaagggaagaagaag 317  Q
    |||||||||||||||||||||| | ||| ||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  41411140 aattctcaattgtttacatgtccctagtttatttaaatcacgaatttgtcaaacccataaactttgaagttgaaaatgtctatgagaagggaagaagaag 41411239  T
Q  318 agaaaaaagcgatgagttgaaacttgtttaacgaaaattatatttaattcatgttttatttaaaaattataattttcttacatatgacaatcttaccaag 417  Q
    ||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  41411240 agaaaaaagcgatgaattgaaacttgtttgacgaaaattatatttaattcatgttttatttaaaaattataattttcttacacatgacaatcttaccaag 41411339  T
Q  418 actagcttccgttgtatgacaattctccaataactactccctatg 462  Q
    ||||||||||||||||||||||||| |||| |||||||| |||||    
T  41411340 actagcttccgttgtatgacaattccccaagaactactctctatg 41411384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 18 - 439
Target Start/End: Complemental strand, 40561024 - 40560603
Alignment:
Q  18 catcttccataaaccaataaattcatccacaaatcaattatccaccctgaaaatcatccataaacccataatgaatccccaaatccaagaaaaggaatat 117  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| ||||||||||||||||||||  ||||||||| |    
T  40561024 catcttccataaaccaataaattcatccacaaaccaattatccaccctgaaaatcatccctaaacctataatgaatccccaaatccat-aaaaggaatct 40560926  T
Q  118 gccacaaactcaatactcatcttcatcccacaaatccccatacccaaattcaaagcaaactacatagtcatcctgaaacccataaattcctaaatcatga 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  40560925 gccacaaactcaatactcatcttcatcccacaaatccccatacccgaattcaaagcaaactacatagtcatcctgaaacccataaatccctaaatcatga 40560826  T
Q  218 aattctcaattgtttacatgtctcc-agtgtatttaaatcacgaattggtcaaacccataaactttgaagttggaaatgtctatgagaagggaagaagaa 316  Q
    |||||||||||||||||||||| || ||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40560825 aattctcaattgtttacatgtcccccagtttatttaaatcacgaatttgtcaaacccataaactttgaagttggaaatgtctatgagaagggaagaagaa 40560726  T
Q  317 gagaaaaaagcgatgagttgaaacttgtttaacgaaaattatatttaattcatgttttatttaaaaattataattttcttacatatgacaatcttaccaa 416  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||    
T  40560725 gagaaaaaagcgatgaattgaaacttgtttaacgaaaattatatttaattcatgttttatttaaaaattataattttcttacagatgacaatcttatcaa 40560626  T
Q  417 gactagcttccgttgtatgacaa 439  Q
    || |||||||| |||||||||||    
T  40560625 gattagcttcctttgtatgacaa 40560603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 351 - 393
Target Start/End: Complemental strand, 27974 - 27932
Alignment:
Q  351 aaaattatatttaattcatgttttatttaaaaattataatttt 393  Q
    ||||||||||||||||||||||| ||| ||||||| |||||||    
T  27974 aaaattatatttaattcatgtttaattaaaaaattctaatttt 27932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 355 - 393
Target Start/End: Original strand, 4053382 - 4053420
Alignment:
Q  355 ttatatttaattcatgttttatttaaaaattataatttt 393  Q
    ||||||| ||||||||||||||||||||||| |||||||    
T  4053382 ttatattaaattcatgttttatttaaaaattttaatttt 4053420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 351 - 393
Target Start/End: Original strand, 31943006 - 31943048
Alignment:
Q  351 aaaattatatttaattcatgttttatttaaaaattataatttt 393  Q
    ||||| ||||||||||||||||||||| |||||||||| ||||    
T  31943006 aaaatcatatttaattcatgttttattaaaaaattatattttt 31943048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 355 - 393
Target Start/End: Original strand, 41411867 - 41411905
Alignment:
Q  355 ttatatttaattcatgttttatttaaaaattataatttt 393  Q
    |||||||||||||||||||| |||||||||| |||||||    
T  41411867 ttatatttaattcatgttttgtttaaaaattctaatttt 41411905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 357 - 393
Target Start/End: Complemental strand, 19164634 - 19164598
Alignment:
Q  357 atatttaattcatgttttatttaaaaattataatttt 393  Q
    |||||||||||||||||| |||||||||| |||||||    
T  19164634 atatttaattcatgttttgtttaaaaattctaatttt 19164598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 341; Significance: 0; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 18 - 462
Target Start/End: Original strand, 36412317 - 36412760
Alignment:
Q  18 catcttccataaaccaataaattcatccacaaatcaattatccaccctgaaaatcatccataaacccataatgaatccccaaatccaagaaaaggaatat 117  Q
    ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |||||||| |||||||||||||||||| |||||||||| |    
T  36412317 catcttccataaaccaataaactcatccacaaaccaattatccaccctgaaaatcatccttaaacccagaatgaatccccaaatcca-gaaaaggaatct 36412415  T
Q  118 gccacaaactcaatactcatcttcatcccacaaatccccatacccaaattcaaagcaaactacatagtcatcctgaaacccataaattcctaaatcatga 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||  |||||||||||||||||||||| ||||||||||||    
T  36412416 gccacaaactcaatactcatcttcatcccacaaatccccatacccgaattcaaagcaaactacgcagtcatcctgaaacccataaatccctaaatcatga 36412515  T
Q  218 aattctcaattgtttacatgtctccagtgtatttaaatcacgaattggtcaaacccataaactttgaagttggaaatgtctatgagaagggaagaagaag 317  Q
    ||||||||||||||| |||||| ||||| ||||||||||||||||| |||||||||| |||||||||| ||| ||| |||||||||||||||||||||||    
T  36412516 aattctcaattgtttgcatgtccccagtttatttaaatcacgaatttgtcaaacccacaaactttgaaattgaaaacgtctatgagaagggaagaagaag 36412615  T
Q  318 agaaaaaagcgatgagttgaaacttgtttaacgaaaattatatttaattcatgttttatttaaaaattataattttcttacatatgacaatcttaccaag 417  Q
    |||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  36412616 agaaaaaagcgattgattgaaacttgtttaacgaaaattatatttaattcatgttttatttaaaaattataattttcttacacatgacaatcttaccaag 36412715  T
Q  418 actagcttccgttgtatgacaattctccaataactactccctatg 462  Q
    ||||||||||||||||||||||||| |||| |||||||| |||||    
T  36412716 actagcttccgttgtatgacaattccccaagaactactctctatg 36412760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 355 - 393
Target Start/End: Original strand, 36413239 - 36413277
Alignment:
Q  355 ttatatttaattcatgttttatttaaaaattataatttt 393  Q
    |||||||||||||||||||| |||||||||| |||||||    
T  36413239 ttatatttaattcatgttttgtttaaaaattctaatttt 36413277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 140; Significance: 4e-73; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 123 - 354
Target Start/End: Original strand, 11148737 - 11148966
Alignment:
Q  123 aaactcaatactcatcttcatcccacaaatccccatacccaaattcaaagcaaactacatagtcatcctgaaacccataaattcctaaatcatgaaattc 222  Q
    |||||||||| |||||| |||||||||||||| ||||||| |||||||||||||||||||||||||| |||||| || |||| ||||| |||||||||||    
T  11148737 aaactcaatagtcatctccatcccacaaatcctcatacccgaattcaaagcaaactacatagtcatcatgaaacacagaaatccctaagtcatgaaattc 11148836  T
Q  223 tcaattgtttacatgtctccagtgtatttaaatcacgaattggtcaaacccataaactttgaagttggaaatgtctatgagaagggaagaagaagagaaa 322  Q
    |||| |||| | ||||| ||||| ||||||||||||||||| |||||||||| ||| | |||||||||||||||||||||||||||||||||||||||||    
T  11148837 tcaaatgtt-atatgtccccagtttatttaaatcacgaatttgtcaaacccacaaattatgaagttggaaatgtctatgagaagggaagaagaagagaaa 11148935  T
Q  323 aaagcgatgagttgaaacttgtttaacgaaaa 354  Q
    ||||| |||| |||||||||| ||||||||||    
T  11148936 aaagcaatgaattgaaacttg-ttaacgaaaa 11148966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 351 - 396
Target Start/End: Complemental strand, 24704546 - 24704501
Alignment:
Q  351 aaaattatatttaattcatgttttatttaaaaattataattttctt 396  Q
    ||||||||||||||| |||||||| || ||||||||||||||||||    
T  24704546 aaaattatatttaatccatgttttgttaaaaaattataattttctt 24704501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 357 - 393
Target Start/End: Original strand, 19247835 - 19247871
Alignment:
Q  357 atatttaattcatgttttatttaaaaattataatttt 393  Q
    |||||||||||||||| |||| |||||||||||||||    
T  19247835 atatttaattcatgttatattaaaaaattataatttt 19247871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 101
Target Start/End: Original strand, 10852333 - 10852416
Alignment:
Q  18 catcttccataaaccaataaattcatccacaaatcaattatccaccctgaaaatcatccataaacccataatgaatccccaaat 101  Q
    |||||||| |||||| |||||||||||||||||||||   | || ||| ||| |||||| || || |||||| |||||||||||    
T  10852333 catcttccctaaacccataaattcatccacaaatcaaaagttcatcctcaaattcatccctagactcataattaatccccaaat 10852416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 355 - 393
Target Start/End: Original strand, 9521983 - 9522021
Alignment:
Q  355 ttatatttaattcatgttttatttaaaaattataatttt 393  Q
    |||||||||||||||||||| |||||||||| |||||||    
T  9521983 ttatatttaattcatgttttttttaaaaattctaatttt 9522021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 357 - 393
Target Start/End: Original strand, 4894300 - 4894336
Alignment:
Q  357 atatttaattcatgttttatttaaaaattataatttt 393  Q
    ||||||||||||||||||||| ||||||| |||||||    
T  4894300 atatttaattcatgttttattaaaaaattctaatttt 4894336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 357 - 393
Target Start/End: Original strand, 14254665 - 14254701
Alignment:
Q  357 atatttaattcatgttttatttaaaaattataatttt 393  Q
    ||||||||||||||||||||| ||||||| |||||||    
T  14254665 atatttaattcatgttttattaaaaaattctaatttt 14254701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 357 - 393
Target Start/End: Complemental strand, 49459747 - 49459711
Alignment:
Q  357 atatttaattcatgttttatttaaaaattataatttt 393  Q
    |||||||||| |||||||||| |||||||||||||||    
T  49459747 atatttaatttatgttttattaaaaaattataatttt 49459711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University