View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2512_high_2 (Length: 983)
Name: NF2512_high_2
Description: NF2512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2512_high_2 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 908; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 908; E-Value: 0
Query Start/End: Original strand, 24 - 983
Target Start/End: Complemental strand, 54075543 - 54074584
Alignment:
| Q |
24 |
gcttccattatcatacaatatgaaattttccactcccacttttgaatgatacacaacccattccctcaaaaacttcgccacattataaaccatcgtgcat |
123 |
Q |
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| T |
54075543 |
gcttccattatcatacaatatgaaattttccactcccacttttgaatgatacacaacccattccctcaaaaacttcgccacattataaaccatcgtgcat |
54075444 |
T |
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| Q |
124 |
gcacaaaggaaatatttgggctgggccggaggcccaaacttttgaacagccacgggcttagaattgggtttattgggcctgggagtgtaatacgctacgg |
223 |
Q |
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| T |
54075443 |
gcacaaaggaaatatttgggctgggccggaggcccaaagttttgaactgccacgggcttagaattgggtttattgggcctgggagtgtaatacgctacgg |
54075344 |
T |
|
| Q |
224 |
acggaaccacgatgttttctccaataatctcgagggaaacaccaattttggaattcgaacccaaatcagacggatctggatgcaagcatcggaaaacctc |
323 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54075343 |
acggaaccacgatgttttctccaataatctcgagggaaactccaatttcggaattcgaacccaaatcagacggatctggatgcaagcatcggaaaacctc |
54075244 |
T |
|
| Q |
324 |
ttgaacagagcttgtaacggcggtgcgaattccgtctcctatttggaaaacacagttaagctccttcgccggcctgtcgtagccttgacgatgattcaca |
423 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
54075243 |
ttgaacagagcttgtaacggcggtgcgaattccgtctcctatttggaaaacacagttaagctccttcgccggcctgtcgtagccttgacgatgattaaca |
54075144 |
T |
|
| Q |
424 |
cctttggcaaacaaaacgacgtcgtcttccattgaaaaagactcgtaaacaacaaaattccacctcacaagctccgtcgccggagaatgattttgaaatt |
523 |
Q |
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| T |
54075143 |
cctttggcaaacaaaactacgtcgtcttccattgaaaaagactcgtaaacaacaaaattccacctcacaagctccgccgccggagaatgattttgaaatt |
54075044 |
T |
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| Q |
524 |
cattttccgacgttccggttaccaacataggttgcgaaaatattttccggcgccaaaccgtactcggcatgtcgcacttgaacgttgtacggttggtgaa |
623 |
Q |
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| T |
54075043 |
cattttccgacgttccggttaccaacataggttgcgaaaatattttccggcgccaaaccgtacccggcatgtcgcacttgaacgttgtacggttggtgaa |
54074944 |
T |
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| Q |
624 |
aggtaaaacaccagagaatttcgcctgagacatttggttgttccggaaaaggcagttatattcatcggaagaagataaaggcgtgtttggagaaacgaga |
723 |
Q |
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| T |
54074943 |
aggtaaaacaccagagaatttcgcctgagacatttggttgttccggaaaaggcagttatattcatcggaagaagataaaggcgtgtttggagaaacgaga |
54074844 |
T |
|
| Q |
724 |
acgagaatctcccaatctggtaataaaactgaaaccgttgagaacgagtttctgaagttgatggatgaaacacgacgtgattggtgtgaaaactcgttga |
823 |
Q |
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| T |
54074843 |
acgagaatctcccaatctggtaataaaactgaaaccgttgagaacgagtttctgaagttgatggatgaaacacgacgtgattggtgtgaaaactcgttga |
54074744 |
T |
|
| Q |
824 |
cgatgttgttgtttttgtttgcattggtatgaacgacaacgtgattttttgcgtttagcttccatggacgatcgtctaggtcgtaatcagggctccaacc |
923 |
Q |
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| T |
54074743 |
cgatgttgttgtttttgtttgcattggtatgaacgacaacgtgattttttgcgtttagcttccatggacgatcgtcaaggtcgtaatcaggtctccaacc |
54074644 |
T |
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| Q |
924 |
agaaacggcgtgacgagagagatgaagagaaaatgcggcaaataaaagaatagaaagtaa |
983 |
Q |
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| T |
54074643 |
agaaacggcatcacgagagagatgaagagaaaatgcagcaaataaaagaatagaaagtaa |
54074584 |
T |
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Target: chr2 (Bit Score: 86; Significance: 1e-40; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 408 - 497
Target Start/End: Original strand, 3229393 - 3229482
Alignment:
| Q |
408 |
ttgacgatgattcacacctttggcaaacaaaacgacgtcgtcttccattgaaaaagactcgtaaacaacaaaattccacctcacaagctc |
497 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3229393 |
ttgacgatgattcacacctttggcaaacaaaacgacgtcgtcctccattgaaaaagactcgtaaacaacaaaattccacctcacaagctc |
3229482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 1e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 292 - 361
Target Start/End: Original strand, 48529190 - 48529259
Alignment:
| Q |
292 |
gacggatctggatgcaagcatcggaaaacctcttgaacagagcttgtaacggcggtgcgaattccgtctc |
361 |
Q |
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| T |
48529190 |
gacggatctggatggaggcatgggaaaacctcttgaatggagcttgtaacggcggtgcaaattccgtctc |
48529259 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 314 - 361
Target Start/End: Complemental strand, 34849783 - 34849736
Alignment:
| Q |
314 |
ggaaaacctcttgaacagagcttgtaacggcggtgcgaattccgtctc |
361 |
Q |
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| T |
34849783 |
ggaaaacctcttgaacggagcttgtaacggcggtgcgaattacgtctc |
34849736 |
T |
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