View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2512_high_22 (Length: 412)
Name: NF2512_high_22
Description: NF2512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2512_high_22 |
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Alignment Details
Target: chr4 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 16 - 395
Target Start/End: Original strand, 36246173 - 36246552
Alignment:
| Q |
16 |
atcaacattattaaactaaaatgtttggttatttttgtttgagttgcaggattacaaagatgtggaaagagttgtcgtctacgttggacaaactatctcc |
115 |
Q |
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| T |
36246173 |
atcaacattattaaactaaaatgtttggttatttttgtttgagttgcaggattacaaagatgtggaaagagttgtcgtctacgttggacaaactatctcc |
36246272 |
T |
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| Q |
116 |
aaccggatataaagagaggacgattctcttttgaagaagaagaaaccataattcagctgcatagcatacttggcaacaagtaataataattaagtctctc |
215 |
Q |
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| T |
36246273 |
gaccggatataaagagaggacgattctcttttgaagaagaagaaaccataattcagctgcatagcatacttggcaacaagtaataataattaagtctctc |
36246372 |
T |
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| Q |
216 |
agtatataaattttaatcaatttatctacatgtgtaacagtgagttaaatacatattaattttcattatgattaagatactatatacgacagaataatag |
315 |
Q |
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| T |
36246373 |
agtatataaattttaatcaatttatctacatgtgtaacaatgagttaaatacatattaattttcattatgattaagacactatatacgacagaataatag |
36246472 |
T |
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| Q |
316 |
atatgatttttgtgactaaactacatagttttgaattgtgtaggtggtcttcaattgcttctaggctaccaggaagaaca |
395 |
Q |
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| T |
36246473 |
atatgatttttgtgactaaactacatagttttgaattgtgtaggtggtcttcaattgcttctaggctaccaggaagaaca |
36246552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 70 - 198
Target Start/End: Complemental strand, 2892568 - 2892440
Alignment:
| Q |
70 |
caaagatgtggaaagagttgtcgtctacgttggacaaactatctccaaccggatataaagagaggacgattctcttttgaagaagaagaaaccataattc |
169 |
Q |
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| T |
2892568 |
caaagatgtggcaaaagttgtcgtctccgttggacaaactatctccgaccagatataaaacgtggtcggttttcatttgaagaggaagagacaattattc |
2892469 |
T |
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| Q |
170 |
agctgcatagcatacttggcaacaagtaa |
198 |
Q |
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| T |
2892468 |
agctacatagcattcttggcaacaagtaa |
2892440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 70 - 158
Target Start/End: Complemental strand, 37881920 - 37881832
Alignment:
| Q |
70 |
caaagatgtggaaagagttgtcgtctacgttggacaaactatctccaaccggatataaagagaggacgattctcttttgaagaagaaga |
158 |
Q |
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| T |
37881920 |
caaaggtgtggtaagagttgtcgtcttcgatggacaaactatttgagacctgatatcaagagaggaaggttctcctttgaagaagaaga |
37881832 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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