View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2512_high_26 (Length: 357)
Name: NF2512_high_26
Description: NF2512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2512_high_26 |
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Alignment Details
Target: chr3 (Bit Score: 123; Significance: 4e-63; HSPs: 10)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 204 - 348
Target Start/End: Original strand, 28916836 - 28916977
Alignment:
| Q |
204 |
ctggtttaactcttgacgtgccaaccaagtcgtcagaatcagaacctataaagtcacttgcatcagattcaccggtatcatcttccccctcacctctttc |
303 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
28916836 |
ctggtttaactcttgacgtgccaaccaagtcgtcagaatcagaacctataaagtcacttgcatcagattcaccggt---atcttccccctcacctctttc |
28916932 |
T |
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| Q |
304 |
atacggttccaagtcaagcttgatgtttccatttttgatgatgtc |
348 |
Q |
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| T |
28916933 |
atacggttccaagtcacgcttgatgtttccatttttaatgatgtc |
28916977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 2 - 141
Target Start/End: Original strand, 28916634 - 28916773
Alignment:
| Q |
2 |
ttggggtcaaaaagctggnnnnnnnggcagtacttatggatgatcgaagcaacatcaatttcggaaaaagctttggtcgtgtcttcaccaatatttttaa |
101 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28916634 |
ttggggtcaaaaagctggtttttttggcagtacttatggatgatcgaagcaacatcaatttcggaaaaagctttggtcgtgtcttcaccaatatttttaa |
28916733 |
T |
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| Q |
102 |
gaaaatctatgagacttcttgaaccccatccaacaaaatc |
141 |
Q |
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| T |
28916734 |
gaaaatctatgagacttcttgaaccccatccaacaaaatc |
28916773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 2 - 141
Target Start/End: Original strand, 28892268 - 28892407
Alignment:
| Q |
2 |
ttggggtcaaaaagctggnnnnnnnggcagtacttatggatgatcgaagcaacatcaatttcggaaaaagctttggtcgtgtcttcaccaatatttttaa |
101 |
Q |
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| T |
28892268 |
ttggggtcaaaaagctggtttttgtggcagtacttactgatgattgaagcaacatcaatttcggaaaaagctttggtcgtgtcttcaccaatatttttaa |
28892367 |
T |
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| Q |
102 |
gaaaatctatgagacttcttgaaccccatccaacaaaatc |
141 |
Q |
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||||||||| |||||||||||||||||||||||||||||| |
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| T |
28892368 |
gaaaatctacgagacttcttgaaccccatccaacaaaatc |
28892407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 2 - 141
Target Start/End: Original strand, 28925860 - 28925999
Alignment:
| Q |
2 |
ttggggtcaaaaagctggnnnnnnnggcagtacttatggatgatcgaagcaacatcaatttcggaaaaagctttggtcgtgtcttcaccaatatttttaa |
101 |
Q |
| |
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|||||||||||||||||| ||||||| | || || |||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
28925860 |
ttggggtcaaaaagctggtgtttgtggcagtaatcattgacgatcgaagcaacttcaatttcggaaaaagctttggtcgtgtctctaccaatatttttaa |
28925959 |
T |
|
| Q |
102 |
gaaaatctatgagacttcttgaaccccatccaacaaaatc |
141 |
Q |
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| T |
28925960 |
gaaaatctatgagacttcttgaaccccatcctacaaaatc |
28925999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 208 - 298
Target Start/End: Original strand, 28902437 - 28902527
Alignment:
| Q |
208 |
tttaactcttgacgtgccaaccaagtcgtcagaatcagaacctataaagtcacttgcatcagattcaccggtatcatcttccccctcacct |
298 |
Q |
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|
||||||||||||||||||||||||||| ||| |||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||| |
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| T |
28902437 |
tttaactcttgacgtgccaaccaagtcatcacaatcagaacctataaagtcactcgcatcagattcaccagtatcgtcttccccctcacct |
28902527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 2 - 141
Target Start/End: Original strand, 28902222 - 28902361
Alignment:
| Q |
2 |
ttggggtcaaaaagctggnnnnnnnggcagtacttatggatgatcgaagcaacatcaatttcggaaaaagctttggtcgtgtcttcaccaatatttttaa |
101 |
Q |
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|||||||||||||||||| ||||||||| ||||||| |||||||||||| ||| || || |||| ||||||||| ||||||| |||||| |
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| T |
28902222 |
ttggggtcaaaaagctggtttgtgtggcagtactggatgatgatccaagcaacatcaagttcagacaacgcttcagtcgtgtctctaccaatacttttaa |
28902321 |
T |
|
| Q |
102 |
gaaaatctatgagacttcttgaaccccatccaacaaaatc |
141 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
28902322 |
gaaaatctatgagacttcttgaaccccatccaacaaaatc |
28902361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 208 - 348
Target Start/End: Original strand, 28926072 - 28926212
Alignment:
| Q |
208 |
tttaactcttgacgtgccaaccaagtcgtcagaatcagaacctataaagtcacttgcatcagattcaccggtatcatcttccccctcacctctttcatac |
307 |
Q |
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||||||||||||||| || | ||||||||| ||||||| |||||||||| || ||||||| ||||| ||||||||||||||||||||| |||||||| |
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| T |
28926072 |
tttaactcttgacgtttcatcgaagtcgtcacaatcagatcctataaagttgctcacatcagaatcaccagtatcatcttccccctcacctatttcatac |
28926171 |
T |
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| Q |
308 |
ggttccaagtcaagcttgatgtttccatttttgatgatgtc |
348 |
Q |
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|| ||||||||| ||||| | || |||||||| | |||||| |
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| T |
28926172 |
ggatccaagtcacgcttgtttttcccatttttaacgatgtc |
28926212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 44 - 138
Target Start/End: Original strand, 28935507 - 28935601
Alignment:
| Q |
44 |
atcgaagcaacatcaatttcggaaaaagctttggtcgtgtcttcaccaatatttttaagaaaatctatgagacttcttgaaccccatccaacaaa |
138 |
Q |
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|
||||||||||||||| ||| | ||| ||||| | ||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
28935507 |
atcgaagcaacatcatgttccgtaaatgcttttgccgtgtctctaccaatatctttaagaaaatctatgagacttcttgaaccccatccaacaaa |
28935601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 240 - 306
Target Start/End: Original strand, 28892515 - 28892581
Alignment:
| Q |
240 |
aatcagaacctataaagtcacttgcatcagattcaccggtatcatcttccccctcacctctttcata |
306 |
Q |
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|||||||| |||| |||| ||| ||||||| ||||||||||||||||||||||||||| ||||||| |
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| T |
28892515 |
aatcagaatctatgaagttactgacatcagactcaccggtatcatcttccccctcacctatttcata |
28892581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 232 - 288
Target Start/End: Original strand, 28935692 - 28935748
Alignment:
| Q |
232 |
gtcgtcagaatcagaacctataaagtcacttgcatcagattcaccggtatcatcttc |
288 |
Q |
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||||||| |||||||||||||||||| ||| ||||||| ||||| | ||||||||| |
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| T |
28935692 |
gtcgtcacaatcagaacctataaagtaactcacatcagagtcaccagcatcatcttc |
28935748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 249 - 348
Target Start/End: Original strand, 34009511 - 34009610
Alignment:
| Q |
249 |
ctataaagtcacttgcatcagattcaccggtatcatcttccccctcacctctttcatacggttccaagtcaagcttgatgtttccatttttgatgatgtc |
348 |
Q |
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||||||||||||| ||||||||||||| ||||||||||||||||||||| |||||| || ||||||||| |||| | |||| ||| || |||||||| |
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| T |
34009511 |
ctataaagtcactcacatcagattcaccagtatcatcttccccctcacctacttcatatggatccaagtcacacttgttttttcaattgttaatgatgtc |
34009610 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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