View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2512_high_29 (Length: 349)

Name: NF2512_high_29
Description: NF2512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2512_high_29
NF2512_high_29
[»] chr4 (29 HSPs)
chr4 (13-329)||(6813795-6814111)
chr4 (18-332)||(6794462-6794776)
chr4 (15-325)||(6624061-6624371)
chr4 (13-332)||(6725948-6726267)
chr4 (13-322)||(6589667-6589976)
chr4 (13-332)||(6649073-6649392)
chr4 (13-332)||(6750865-6751184)
chr4 (13-332)||(6535282-6535601)
chr4 (13-332)||(6756483-6756802)
chr4 (23-332)||(6672673-6672983)
chr4 (24-329)||(6713832-6714137)
chr4 (13-332)||(6499978-6500297)
chr4 (45-332)||(6547565-6547852)
chr4 (13-329)||(6834195-6834505)
chr4 (48-215)||(8412955-8413122)
chr4 (72-237)||(4925774-4925940)
chr4 (68-277)||(4322800-4323009)
chr4 (47-277)||(4358505-4358735)
chr4 (47-123)||(4333801-4333877)
chr4 (45-232)||(25568132-25568319)
chr4 (70-274)||(4343040-4343244)
chr4 (47-123)||(4351478-4351554)
chr4 (68-123)||(4126135-4126190)
chr4 (177-236)||(4925710-4925769)
chr4 (71-121)||(4135482-4135532)
chr4 (177-278)||(6811813-6811914)
chr4 (177-244)||(6832365-6832432)
chr4 (73-107)||(7890541-7890575)
chr4 (284-329)||(8412884-8412929)
[»] scaffold0373 (1 HSPs)
scaffold0373 (18-332)||(11527-11841)
[»] chr7 (7 HSPs)
chr7 (68-232)||(36215590-36215754)
chr7 (46-136)||(34727413-34727503)
chr7 (46-107)||(34730571-34730632)
chr7 (64-136)||(18929223-18929295)
chr7 (45-119)||(34721095-34721169)
chr7 (46-107)||(34735170-34735231)
chr7 (45-107)||(18924337-18924399)
[»] chr6 (17 HSPs)
chr6 (45-232)||(5148634-5148821)
chr6 (45-123)||(5075406-5075484)
chr6 (47-124)||(5381897-5381974)
chr6 (47-118)||(5104549-5104620)
chr6 (60-123)||(5341943-5342006)
chr6 (177-232)||(5423893-5423948)
chr6 (68-118)||(5068772-5068822)
chr6 (180-238)||(5068884-5068942)
chr6 (45-119)||(5183627-5183701)
chr6 (60-118)||(5356306-5356364)
chr6 (68-118)||(5368714-5368764)
chr6 (45-123)||(5395292-5395370)
chr6 (166-232)||(5431547-5431613)
chr6 (46-123)||(5175115-5175192)
chr6 (45-118)||(5424007-5424080)
chr6 (186-238)||(5094175-5094227)
chr6 (68-120)||(5431659-5431711)
[»] scaffold0294 (2 HSPs)
scaffold0294 (68-118)||(10366-10416)
scaffold0294 (177-238)||(10475-10536)
[»] chr3 (1 HSPs)
chr3 (78-123)||(6907450-6907495)


Alignment Details
Target: chr4 (Bit Score: 257; Significance: 1e-143; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 13 - 329
Target Start/End: Complemental strand, 6814111 - 6813795
Alignment:
Q  13 cagaataagaaatcacatctgttgaatgtttcgcaaaatcttctatcggacttggttgcttgaatgcatgccaactgaaaagcttaagagattcactttc 112  Q
    ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6814111 cagaataagaaatcacatctgttaaatgtttagcaaaatcttctatcggacttggttgcttgaatgcatgccaactgaaaagcttaagagattcactttc 6814012  T
Q  113 atccatttcttctattgtatacacttgataaacttcatacaatctaagaagacgcatatttctagttgtgattattattctactacccggaccaaaccat 212  Q
    ||||||||||||||||| |||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| ||| |||||||||||    
T  6814011 atccatttcttctattgcatacacttgataaatttcatacaatctgagaagacgcatatttctagttgtgattattattctactgcccagaccaaaccat 6813912  T
Q  213 tcacggcttccacacaaagcctttagctgatcgatttcattgacatcatcaagcacaagaagtaccttctgctgggcaagtctttccttcaatatatttt 312  Q
    ||  ||||||||||||||||||||||||| || | |||||| |||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||    
T  6813911 tcgtggcttccacacaaagcctttagctgctccaattcattcacatcatcaagcacaagaagtaccttcttctgggaaagtctttccttcaatatatttt 6813812  T
Q  313 tccctgattcgatgtca 329  Q
    |||||||||||||||||    
T  6813811 tccctgattcgatgtca 6813795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 18 - 332
Target Start/End: Complemental strand, 6794776 - 6794462
Alignment:
Q  18 taagaaatcacatctgttgaatgtttcgcaaaatcttctatcggacttggttgcttgaatgcatgccaactgaaaagcttaagagattcactttcatcca 117  Q
    |||| ||||||||||||||||||||| ||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6794776 taagcaatcacatctgttgaatgtttagcaaaatattctattggacttggttgcttgaatgcatgccaactgaaaagcttaagagattcactttcatcca 6794677  T
Q  118 tttcttctattgtatacacttgataaacttcatacaatctaagaagacgcatatttctagttgtgattattattctactacccggaccaaaccattcacg 217  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||| | |||||||| |||||||||||||||||||| ||||||||||||||||  ||    
T  6794676 tttcttctattgtatacacctgataaacttcatacaatctaagaagatgaatatttcttgttgtgattattattctactccccggaccaaaccatttgcg 6794577  T
Q  218 gcttccacacaaagcctttagctgatcgatttcattgacatcatcaagcacaagaagtaccttctgctgggcaagtctttccttcaatatatttttccct 317  Q
    ||| |||||||| ||||||||||| || | |||||| |||||||||||||||||||||| | | | ||||||||||||||||||||||||||||||||||    
T  6794576 gctaccacacaatgcctttagctggtccaattcattcacatcatcaagcacaagaagtatccttttctgggcaagtctttccttcaatatatttttccct 6794477  T
Q  318 gattcgatgtcacgt 332  Q
    ||||| || ||||||    
T  6794476 gattctatatcacgt 6794462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 15 - 325
Target Start/End: Original strand, 6624061 - 6624371
Alignment:
Q  15 gaataagaaatcacatctgttgaatgtttcgcaaaatcttctatcggacttggttgcttgaatgcatgccaactgaaaagcttaagagattcactttcat 114  Q
    ||||||| ||||||||||||||||||| | |||||| |||||  |||||||||||||||||||||||||||||||||||||| |||||||||||| ||||    
T  6624061 gaataagcaatcacatctgttgaatgtgtagcaaaaccttctgccggacttggttgcttgaatgcatgccaactgaaaagctcaagagattcactctcat 6624160  T
Q  115 ccatttcttctattgtatacacttgataaacttcatacaatctaagaagacgcatatttctagttgtgattattattctactacccggaccaaaccattc 214  Q
    |||||||||| |||||||||||| | | ||||  | || | ||||||||| ||||||  || |||||||| || |||||||| |||||||||||||||||    
T  6624161 ccatttcttcaattgtatacactaggtcaactctagacgacctaagaagatgcatatcccttgttgtgatgataattctactccccggaccaaaccattc 6624260  T
Q  215 acggcttccacacaaagcctttagctgatcgatttcattgacatcatcaagcacaagaagtaccttctgctgggcaagtctttccttcaatatatttttc 314  Q
    |||||||||||||||||||||||| || || | |||||| |||||||||||||||||||||||| | | |||||||||||||||||||||||||||||||    
T  6624261 acggcttccacacaaagcctttagttggtccaattcattcacatcatcaagcacaagaagtaccctattctgggcaagtctttccttcaatatatttttc 6624360  T
Q  315 cctgattcgat 325  Q
    |||||||||||    
T  6624361 cctgattcgat 6624371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 13 - 332
Target Start/End: Complemental strand, 6726267 - 6725948
Alignment:
Q  13 cagaataagaaatcacatctgttgaatgtttcgcaaaatcttctatcggacttggttgcttgaatgcatgccaactgaaaagcttaagagattcactttc 112  Q
    ||||||| | ||||||||||||||||||||| |||||||||||| | ||||||| |||||||||||||||||||||||||||||| ||||||||||||||    
T  6726267 cagaatatgcaatcacatctgttgaatgtttagcaaaatcttcttttggacttgattgcttgaatgcatgccaactgaaaagcttgagagattcactttc 6726168  T
Q  113 atccatttcttctattgtatacacttgataaacttcatacaatctaagaagacgcatatttctagttgtgattattattctactacccggaccaaaccat 212  Q
    |||||||||||||||||||||||||  || ||||  | || | ||||||||| || ||| ||| |||||||| || |||||||| |||||||||||||||    
T  6726167 atccatttcttctattgtatacactacatcaactggacacgaactaagaagatgcttatctctcgttgtgatgataattctactccccggaccaaaccat 6726068  T
Q  213 tcacggcttccacacaaagcctttagctgatcgatttcattgacatcatcaagcacaagaagtaccttctgctgggcaagtctttccttcaatatatttt 312  Q
    |||||||||||| |||| ||||||||||| || | || ||| |||||||| ||||||||||||||  |   ||||| |||||||||||||||||||||||    
T  6726067 tcacggcttccatacaatgcctttagctggtccaatttattcacatcatctagcacaagaagtacactagtctgggaaagtctttccttcaatatatttt 6725968  T
Q  313 tccctgattcgatgtcacgt 332  Q
    |||||||||| |||||||||    
T  6725967 tccctgattctatgtcacgt 6725948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 13 - 322
Target Start/End: Original strand, 6589667 - 6589976
Alignment:
Q  13 cagaataagaaatcacatctgttgaatgtttcgcaaaatcttctatcggacttggttgcttgaatgcatgccaactgaaaagcttaagagattcactttc 112  Q
    ||||||||| ||||||||||||||||||  | |||||||||||| | ||||||||||| ||||||||||||||||| || |||||||| |||||| |||     
T  6589667 cagaataagcaatcacatctgttgaatgcgtagcaaaatcttcttttggacttggttgtttgaatgcatgccaactaaacagcttaagtgattcaatttt 6589766  T
Q  113 atccatttcttctattgtatacacttgataaacttcatacaatctaagaagacgcatatttctagttgtgattattattctactacccggaccaaaccat 212  Q
     |||||||||||||||||||||| |||||||||| || |||||||||||||| |||||| ||| |||||||||||||||||||| ||||||||||||||     
T  6589767 gtccatttcttctattgtatacatttgataaactccacacaatctaagaagatgcatatctcttgttgtgattattattctactccccggaccaaaccaa 6589866  T
Q  213 tcacggcttccacacaaagcctttagctgatcgatttcattgacatcatcaagcacaagaagtaccttctgctgggcaagtctttccttcaatatatttt 312  Q
    |||||||| |||||||||||||||||||| || | |||||| |||||||||| ||||||||| ||| | | ||||| |||| |||||||||| |||||||    
T  6589867 tcacggctaccacacaaagcctttagctgctccaattcattcacatcatcaaacacaagaagaaccctattctgggaaagtttttccttcaacatatttt 6589966  T
Q  313 tccctgattc 322  Q
    | ||||||||    
T  6589967 tgcctgattc 6589976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 13 - 332
Target Start/End: Complemental strand, 6649392 - 6649073
Alignment:
Q  13 cagaataagaaatcacatctgttgaatgtttcgcaaaatcttctatcggacttggttgcttgaatgcatgccaactgaaaagcttaagagattcactttc 112  Q
    ||||||||| ||||||||||||||||||| | |||||||||| | | ||||||||||| ||||||||||||||||||||||||| |||||||||||| ||    
T  6649392 cagaataagcaatcacatctgttgaatgtgtagcaaaatcttttgtaggacttggttgattgaatgcatgccaactgaaaagctcaagagattcactatc 6649293  T
Q  113 atccatttcttctattgtatacacttgataaacttcatacaatctaagaagacgcatatttctagttgtgattattattctactacccggaccaaaccat 212  Q
      ||||||||||||| |||||||||| || ||||  | || ||||||||||| |||||| ||| |||||||| || |||||||| |||||||||||||||    
T  6649292 tcccatttcttctatagtatacacttcatcaactcgacacgatctaagaagatgcatatctctcgttgtgatgataattctactccccggaccaaaccat 6649193  T
Q  213 tcacggcttccacacaaagcctttagctgatcgatttcattgacatcatcaagcacaagaagtaccttctgctgggcaagtctttccttcaatatatttt 312  Q
    |||||||||||||||||||||||||  || || | |||||| |||||||||||||||| ||||||| | | ||||| ||||||||| |||||| ||||||    
T  6649192 tcacggcttccacacaaagcctttaattggtccaattcattcacatcatcaagcacaataagtaccctattctgggaaagtctttctttcaatgtatttt 6649093  T
Q  313 tccctgattcgatgtcacgt 332  Q
    |||||||||| |||||||||    
T  6649092 tccctgattctatgtcacgt 6649073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 13 - 332
Target Start/End: Complemental strand, 6751184 - 6750865
Alignment:
Q  13 cagaataagaaatcacatctgttgaatgtttcgcaaaatcttctatcggacttggttgcttgaatgcatgccaactgaaaagcttaagagattcactttc 112  Q
    ||||||||| |||||||||| |||||||| | ||||||  |||| | || |||||||||||||||||||||||||||||||||| |||||||||||||||    
T  6751184 cagaataagcaatcacatcttttgaatgtgtagcaaaaatttctgttggccttggttgcttgaatgcatgccaactgaaaagctcaagagattcactttc 6751085  T
Q  113 atccatttcttctattgtatacacttgataaacttcatacaatctaagaagacgcatatttctagttgtgattattattctactacccggaccaaaccat 212  Q
     | |||||||| ||||| ||||||||||| ||| | | | ||| ||||||||  ||||||||| |||||||| ||||||||||| || ||||||||||||    
T  6751084 gttcatttcttttattgcatacacttgatcaaccttacataatgtaagaagatccatatttcttgttgtgatgattattctactccctggaccaaaccat 6750985  T
Q  213 tcacggcttccacacaaagcctttagctgatcgatttcattgacatcatcaagcacaagaagtaccttctgctgggcaagtctttccttcaatatatttt 312  Q
    |||||||||||||||||||| ||||| || || | |||||| |||||||||||||||||||||||| | | |||||||||||||| ||||||||| ||||    
T  6750984 tcacggcttccacacaaagcttttagttggtccaattcattcacatcatcaagcacaagaagtaccctattctgggcaagtctttgcttcaatatgtttt 6750885  T
Q  313 tccctgattcgatgtcacgt 332  Q
    |||||||||| |||||||||    
T  6750884 tccctgattctatgtcacgt 6750865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 13 - 332
Target Start/End: Original strand, 6535282 - 6535601
Alignment:
Q  13 cagaataagaaatcacatctgttgaatgtttcgcaaaatcttctatcggacttggttgcttgaatgcatgccaactgaaaagcttaagagattcactttc 112  Q
    ||||||||| ||||||||| ||||||||| | ||||||||||||||||||||||||| ||||||||||||||||||||||||   ||||| |||||||||    
T  6535282 cagaataagcaatcacatccgttgaatgtgtagcaaaatcttctatcggacttggtttcttgaatgcatgccaactgaaaagagcaagagcttcactttc 6535381  T
Q  113 atccatttcttctattgtatacacttgataaacttcatacaatctaagaagacgcatatttctagttgtgattattattctactacccggaccaaaccat 212  Q
    |||||||||||||||| |||||||||||| ||||    |  ||||||||||| ||||||  || |||||||| ||||||||||| |||| ||||||||||    
T  6535382 atccatttcttctattttatacacttgatcaactctgcatgatctaagaagatgcatatcccttgttgtgatgattattctactccccgaaccaaaccat 6535481  T
Q  213 tcacggcttccacacaaagcctttagctgatcgatttcattgacatcatcaagcacaagaagtaccttctgctgggcaagtctttccttcaatatatttt 312  Q
    || ||||||||||||||||||||||| || || | |||||| ||||||||||| |||| || |||| | | ||||| |||||||| ||||||||||||||    
T  6535482 tctcggcttccacacaaagcctttagttggtccaattcattaacatcatcaagtacaaaaaatacccttttctgggaaagtctttgcttcaatatatttt 6535581  T
Q  313 tccctgattcgatgtcacgt 332  Q
    |||||||||| |||||||||    
T  6535582 tccctgattcaatgtcacgt 6535601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 13 - 332
Target Start/End: Complemental strand, 6756802 - 6756483
Alignment:
Q  13 cagaataagaaatcacatctgttgaatgtttcgcaaaatcttctatcggacttggttgcttgaatgcatgccaactgaaaagcttaagagattcactttc 112  Q
    ||||||||| |||||| ||  |||||||| | | ||| |||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| |||||    
T  6756802 cagaataagcaatcacttcatttgaatgtgtagaaaactcttctttcggacttggttgcttgaatgcatgccaactgaaaagctcaagagattcgctttc 6756703  T
Q  113 atccatttcttctattgtatacacttgataaacttcatacaatctaagaagacgcatatttctagttgtgattattattctactacccggaccaaaccat 212  Q
    ||||||||||| ||||  ||| ||||||| ||||  |||  |||||||||||  | ||| ||| |||||||| |||||||||||||||||||||||||||    
T  6756702 atccatttcttttatttcataaacttgatcaactctataagatctaagaagattcctatctcttgttgtgatgattattctactacccggaccaaaccat 6756603  T
Q  213 tcacggcttccacacaaagcctttagctgatcgatttcattgacatcatcaagcacaagaagtaccttctgctgggcaagtctttccttcaatatatttt 312  Q
    |||||||||||||||||| ||| ||| || |  | |||| |||||||||||||||| ||||||||| | | |||||| ||||||| ||||||||||||||    
T  6756602 tcacggcttccacacaaaacctgtagttggtgaaattcactgacatcatcaagcactagaagtaccctattctgggccagtctttgcttcaatatatttt 6756503  T
Q  313 tccctgattcgatgtcacgt 332  Q
    |||||||||| |||||||||    
T  6756502 tccctgattctatgtcacgt 6756483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 23 - 332
Target Start/End: Complemental strand, 6672983 - 6672673
Alignment:
Q  23 aatcacatctgttgaatgtttcgcaaaatcttctatcggacttggttgcttgaatgcatgccaactgaaaagcttaagagattcactttcatccatttct 122  Q
    ||||||||||  |||||||   |||||||||||||  ||| ||||| ||||||| |||||||||||||||||||  ||||||||||||||||||||||||    
T  6672983 aatcacatcttctgaatgtgcagcaaaatcttctactggaattggtagcttgaacgcatgccaactgaaaagctctagagattcactttcatccatttct 6672884  T
Q  123 tctattgtatacacttgataaacttcatacaatctaagaagacgcatatttctagttgtgattattattctactaccc-ggaccaaaccattcacggctt 221  Q
    | ||||| ||||||| ||| ||||  | || ||||||||||| |||||| ||| || ||||| |||| |||||| ||  |||||||||||||||  ||||    
T  6672883 tgtattgcatacactcgatcaactctacacgatctaagaagatgcatatctcttgtggtgatgattactctactcccttggaccaaaccattcatagctt 6672784  T
Q  222 ccacacaaagcctttagctgatcgatttcattgacatcatcaagcacaagaagtaccttctgctgggcaagtctttccttcaatatatttttccctgatt 321  Q
    ||||||||||||||||||||||| | |||||| ||||||||||||||||||||||||||   |||||||||||||||||||| ||||||||||| |||||    
T  6672783 ccacacaaagcctttagctgatccaattcattcacatcatcaagcacaagaagtaccttgctctgggcaagtctttccttcagtatatttttccttgatt 6672684  T
Q  322 cgatgtcacgt 332  Q
    | |||||||||    
T  6672683 ctatgtcacgt 6672673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 24 - 329
Target Start/End: Complemental strand, 6714137 - 6713832
Alignment:
Q  24 atcacatctgttgaatgtttcgcaaaatcttctatcggacttggttgcttgaatgcatgccaactgaaaagcttaagagattcactttcatccatttctt 123  Q
    ||||||||| |||||||| | |||||| |||||  ||||| ||||||||| ||||||||||| |  ||||||| ||||||||| || ||||||||||||     
T  6714137 atcacatctcttgaatgtgtagcaaaaccttctggcggacatggttgcttaaatgcatgccagcaaaaaagctcaagagattccctctcatccatttcta 6714038  T
Q  124 ctattgtatacacttgataaacttcatacaatctaagaagacgcatatttctagttgtgattattattctactacccggaccaaaccattcacggcttcc 223  Q
    ||| |||||||||| ||| ||||  | || |||||||||||||||||| ||| |||||||| |||| |||||| ||||||||||||||||  ||||||||    
T  6714037 ctactgtatacactagatcaactctacacgatctaagaagacgcatatctcttgttgtgatgattactctactccccggaccaaaccatttgcggcttcc 6713938  T
Q  224 acacaaagcctttagctgatcgatttcattgacatcatcaagcacaagaagtaccttctgctgggcaagtctttccttcaatatatttttccctgattcg 323  Q
    ||||||||||||||| || || | || ||| |||||||||||||||||||||||| | | ||| ||||||||||||||||||| |||||||||||||||     
T  6713937 acacaaagcctttagttggtccagtttattcacatcatcaagcacaagaagtacccttttctgagcaagtctttccttcaataaatttttccctgattca 6713838  T
Q  324 atgtca 329  Q
    ||||||    
T  6713837 atgtca 6713832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 13 - 332
Target Start/End: Original strand, 6499978 - 6500297
Alignment:
Q  13 cagaataagaaatcacatctgttgaatgtttcgcaaaatcttctatcggacttggttgcttgaatgcatgccaactgaaaagcttaagagattcactttc 112  Q
    |||||||||||| ||||||| |||||||| | |||||||||||| | ||| |||||||||||||||||||||| |||||||||| |||||||||||||||    
T  6499978 cagaataagaaaccacatcttttgaatgtgtagcaaaatcttctgttggagttggttgcttgaatgcatgccagctgaaaagctcaagagattcactttc 6500077  T
Q  113 atccatttcttctattgtatacacttgataaacttcatacaatctaagaagacgcatatttctagttgtgattattattctactacccggaccaaaccat 212  Q
     ||||| |||| ||||| | |||| | || ||||  | |  || |||||||| ||| || ||| |||||||| ||||||||||| |||||||||||||||    
T  6500078 gtccatatcttgtattgcacacacctcatcaactctacatgatttaagaagatgcaaatctcttgttgtgataattattctactccccggaccaaaccat 6500177  T
Q  213 tcacggcttccacacaaagcctttagctgatcgatttcattgacatcatcaagcacaagaagtaccttctgctgggcaagtctttccttcaatatatttt 312  Q
    || ||||||||| ||||||||||||| ||||| | ||| || |||||||||||||||| ||||||||| | ||| | |||||||| | ||||||| ||||    
T  6500178 tcgcggcttccaaacaaagcctttagttgatccagttcgttcacatcatcaagcacaaaaagtacctttttctgagaaagtctttgcctcaatatgtttt 6500277  T
Q  313 tccctgattcgatgtcacgt 332  Q
    |||||||||| |||||||||    
T  6500278 tccctgattctatgtcacgt 6500297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 45 - 332
Target Start/End: Original strand, 6547565 - 6547852
Alignment:
Q  45 gcaaaatcttctatcggacttggttgcttgaatgcatgccaactgaaaagcttaagagattcactttcatccatttcttctattgtatacacttgataaa 144  Q
    |||||||||||||| |||||||||||||||||||||||||||||||| |||| |||||||||| ||||||||||||||| ||||  ||||||||||| ||    
T  6547565 gcaaaatcttctattggacttggttgcttgaatgcatgccaactgaatagctcaagagattcaatttcatccatttcttttatttcatacacttgatcaa 6547664  T
Q  145 cttcatacaatctaagaagacgcatatttctagttgtgattattattctactacccggaccaaaccattcacggcttccacacaaagcctttagctgatc 244  Q
    ||    || |||||||||||||||||| ||| |||||||| |||||||| || || |||||||||||||  |||||||||||||| |||||||  || ||    
T  6547665 ctctgcacgatctaagaagacgcatatctcttgttgtgatgattattctgctcccgggaccaaaccatttgcggcttccacacaatgcctttatttggtc 6547764  T
Q  245 gatttcattgacatcatcaagcacaagaagtaccttctgctgggcaagtctttccttcaatatatttttccctgattcgatgtcacgt 332  Q
     | |||||| |||||||||||||| | ||| ||  | |  | ||  ||||||||||| ||| |||||||||||||||| |||||||||    
T  6547765 cagttcatttacatcatcaagcactaaaagcactctattatcggagagtctttcctttaatgtatttttccctgattcaatgtcacgt 6547852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 13 - 329
Target Start/End: Complemental strand, 6834505 - 6834195
Alignment:
Q  13 cagaataagaaatcacatctgttgaatgtttcgcaaaatcttctatcggacttggttgcttgaatgcatgccaactgaaaagcttaagagattcactttc 112  Q
    ||||||||| ||||||||||||||||||| | ||||||||   |   ||||||||| ||||||||||||||||||||||||||| |||||||||||||||    
T  6834505 cagaataagcaatcacatctgttgaatgtgtagcaaaatcgattggaggacttggtagcttgaatgcatgccaactgaaaagctcaagagattcactttc 6834406  T
Q  113 atccatttcttctattgtatacacttgataaacttcatacaatctaagaagacgcatatttctagttgtgattattattctactacccggaccaaaccat 212  Q
     |||||||||| ||| | ||||| |||||      || |  |||| || || | ||||| ||| || ||||| ||||||||||| || | ||||||||||    
T  6834405 gtccatttcttttatagcatacaattgat------cacatgatcttaggagcctcatatctcttgtcgtgatgattattctacttccggaaccaaaccat 6834312  T
Q  213 tcacggcttccacacaaagcctttagctgatcgatttcattgacatcatcaagcacaagaagtaccttctgctgggcaagtctttccttcaatatatttt 312  Q
    || || |||||||||||||| ||||| || |  | |||| | |||||||||||||||| ||| ||| | | ||| |||||||||| |||||||||| |||    
T  6834311 tcgcgacttccacacaaagcatttagttggtgcaattcagttacatcatcaagcacaaaaagcacccttttctgagcaagtctttgcttcaatataattt 6834212  T
Q  313 tccctgattcgatgtca 329  Q
    |||||||||||||||||    
T  6834211 tccctgattcgatgtca 6834195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 48 - 215
Target Start/End: Complemental strand, 8413122 - 8412955
Alignment:
Q  48 aaatcttctatcggacttggttgcttgaatgcatgccaactgaaaagcttaagagattcactttcatccatttcttctattgtatacacttgataaactt 147  Q
    ||||||| | |||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| ||||||||||||||||| ||||     
T  8413122 aaatcttttgtcggacttggttgcttgaatgcatgccaactgaaaagcttgagagattcactttcgtccatttcttttattgtatacacttgatcaactc 8413023  T
Q  148 catacaatctaagaagacgcatatttctagttgtgattattattctactacccggaccaaaccattca 215  Q
     | |  || |||||||| |||| | ||| |||||||| ||||||||||| ||||||||||||||||||    
T  8413022 tacatgatgtaagaagatgcatctctcttgttgtgatgattattctacttcccggaccaaaccattca 8412955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 72 - 237
Target Start/End: Complemental strand, 4925940 - 4925774
Alignment:
Q  72 ttgaatgcatgccaactgaaaagcttaagagattcactttcatccatttcttctatt-gtatacacttgataaacttcatacaatctaagaagacgcata 170  Q
    |||||||||||||||| || |||||||| |||||||||||  ||||||||||||||| ||||||| | ||| ||||  | || ||| ||||||| | |||    
T  4925940 ttgaatgcatgccaacagagaagcttaatagattcacttttgtccatttcttctatttgtatacattcgatcaactctacacgatccaagaagatgaata 4925841  T
Q  171 tttctagttgtgattattattctactacccggaccaaaccattcacggcttccacacaaagccttta 237  Q
    ||||| |||||||| |||||||||||||||||||||||||  ||  |||||||||||||||||||||    
T  4925840 tttcttgttgtgatgattattctactacccggaccaaaccggtcgtggcttccacacaaagccttta 4925774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 68 - 277
Target Start/End: Original strand, 4322800 - 4323009
Alignment:
Q  68 ttgcttgaatgcatgccaactgaaaagcttaagagattcactttcatccatttcttctattgtatacacttgataaacttcatacaatctaagaagacgc 167  Q
    ||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||  ||| | || | ||  | |||   ||    |||||| | | ||    
T  4322800 ttgcttgaatgcatgccaactaaaaagctcaagagattcactttcatccatttctttcattatgtatattttgtcaaccctatttcctctaagtatatgc 4322899  T
Q  168 atatttctagttgtgattattattctactacccggaccaaaccattcacggcttccacacaaagcctttagctgatcgatttcattgacatcatcaagca 267  Q
     ||| |||||||||||| |||||||||||||| ||| ||||||||| ||  |||||||||||||| |||||||| || | || ||| ||||| ||||| |    
T  4322900 ttatctctagttgtgatgattattctactacctggagcaaaccatttacaacttccacacaaagcatttagctggtccagtttattcacatcgtcaagta 4322999  T
Q  268 caagaagtac 277  Q
    ||||||||||    
T  4323000 caagaagtac 4323009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 47 - 277
Target Start/End: Complemental strand, 4358735 - 4358505
Alignment:
Q  47 aaaatcttctatcggacttggttgcttgaatgcatgccaactgaaaagcttaagagattcactttcatccatttcttctattgtatacacttgataaact 146  Q
    |||||||||| | || |||| ||||||||| || |||||||| ||||||| ||||||||||||||||||||||||||  ||| | || | || || ||||    
T  4358735 aaaatcttctctaggccttgtttgcttgaacgcgtgccaactaaaaagctcaagagattcactttcatccatttctttcattatgtatattttatcaact 4358636  T
Q  147 tcatacaatctaagaagacgcatatttctagttgtgattattattctactacccggaccaaaccattcacggcttccacacaaagcctttagctgatcga 246  Q
    |  | |  |||||| | | || |||  ||||||||||| || |||||||| || ||| ||||||||| ||  |||||||||||||| ||||| || || |    
T  4358635 tgtttccctctaagtatatgcttatccctagttgtgatgataattctacttcctggagcaaaccatttacaacttccacacaaagcatttagttggtcca 4358536  T
Q  247 tttcattgacatcatcaagcacaagaagtac 277  Q
     || ||||||||| ||||| |||| ||||||    
T  4358535 atttattgacatcgtcaagtacaataagtac 4358505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 47 - 123
Target Start/End: Complemental strand, 4333877 - 4333801
Alignment:
Q  47 aaaatcttctatcggacttggttgcttgaatgcatgccaactgaaaagcttaagagattcactttcatccatttctt 123  Q
    |||||||||| | ||||| | |||||||||||||||| |||| ||||||| ||||||||||||||||||||||||||    
T  4333877 aaaatcttctgtgggactcgtttgcttgaatgcatgcaaactaaaaagctcaagagattcactttcatccatttctt 4333801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 45 - 232
Target Start/End: Complemental strand, 25568319 - 25568132
Alignment:
Q  45 gcaaaatcttctatcggacttggttgcttgaatgcatgccaactgaaaagcttaagagattcactttcatccatttcttctattgtatacacttgataaa 144  Q
    |||||||| ||| | || |||| |||||||||||||||||| || ||||||| ||  ||||||||||||  ||||||||  ||||| || | ||||| ||    
T  25568319 gcaaaatcatctttagggcttgcttgcttgaatgcatgccagctaaaaagctcaattgattcactttcacacatttctttcattgtgtatatttgatcaa 25568220  T
Q  145 cttcatacaatctaagaagacgcatatttctagttgtgattattattctactacccggaccaaaccattcacggcttccacacaaagc 232  Q
    ||  |||   ||||||||    ||||| |||||| ||||| | |||||||||||||| ||||||||||| ||| | ||||||||||||    
T  25568219 ctctatatcctctaagaatgttcatatctctagtggtgatgactattctactacccgaaccaaaccattgacgacgtccacacaaagc 25568132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 70 - 274
Target Start/End: Complemental strand, 4343244 - 4343040
Alignment:
Q  70 gcttgaatgcatgccaactgaaaagcttaagagattcactttcatccatttcttctattgtatacacttgataaacttcatacaatctaagaagacgcat 169  Q
    ||||||||||||||||||| ||||||| ||||||||||||| ||||||||||||  ||| | || | ||  |  ||||  | |  |||||| | | || |    
T  4343244 gcttgaatgcatgccaactaaaaagctcaagagattcacttccatccatttctttcattatgtatattttgtcgacttgtttccctctaagtatatgctt 4343145  T
Q  170 atttctagttgtgattattattctactacccggaccaaaccattcacggcttccacacaaagcctttagctgatcgatttcattgacatcatcaagcaca 269  Q
    ||  || |||||||| ||||||||||| || ||| ||||||||  ||| |||||||||||||| ||||| ||||| | || ||| ||||| ||||| |||    
T  4343144 atccctggttgtgatgattattctactccctggagcaaaccatctacgacttccacacaaagcatttagttgatccaatttattcacatcgtcaagtaca 4343045  T
Q  270 agaag 274  Q
    |||||    
T  4343044 agaag 4343040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 47 - 123
Target Start/End: Complemental strand, 4351554 - 4351478
Alignment:
Q  47 aaaatcttctatcggacttggttgcttgaatgcatgccaactgaaaagcttaagagattcactttcatccatttctt 123  Q
    |||||||||| | |||||   ||||||||||||||||||||| ||| ||| ||||||||||||||||| ||||||||    
T  4351554 aaaatcttctttgggactcttttgcttgaatgcatgccaactaaaacgctcaagagattcactttcattcatttctt 4351478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 68 - 123
Target Start/End: Original strand, 4126135 - 4126190
Alignment:
Q  68 ttgcttgaatgcatgccaactgaaaagcttaagagattcactttcatccatttctt 123  Q
    ||||||||| ||||||||||| ||||| | ||||||||||||||||||||||||||    
T  4126135 ttgcttgaaagcatgccaactaaaaagttcaagagattcactttcatccatttctt 4126190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 177 - 236
Target Start/End: Original strand, 4925710 - 4925769
Alignment:
Q  177 gttgtgattattattctactacccggaccaaaccattcacggcttccacacaaagccttt 236  Q
    |||||||| |||||||||||||| |||||||||||  | |||||||||||||||||||||    
T  4925710 gttgtgatgattattctactacctggaccaaaccagccgcggcttccacacaaagccttt 4925769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 71 - 121
Target Start/End: Original strand, 4135482 - 4135532
Alignment:
Q  71 cttgaatgcatgccaactgaaaagcttaagagattcactttcatccatttc 121  Q
    |||||||||||||||||| ||||||| |||||||||||||||||| |||||    
T  4135482 cttgaatgcatgccaactaaaaagctcaagagattcactttcatctatttc 4135532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 177 - 278
Target Start/End: Complemental strand, 6811914 - 6811813
Alignment:
Q  177 gttgtgattattattctactacccggaccaaaccattcacggcttccacacaaagcctttagctgatcgatttcattgacatcatcaagcacaagaagta 276  Q
    |||||||| |||||| | ||||| |  |||||||||||||| ||||| |||||||| |||||||| || | || ||| ||||| ||||| ||||||||||    
T  6811914 gttgtgatgattattttgctaccggtgccaaaccattcacgacttccgcacaaagcgtttagctgctccaatttattaacatcgtcaagtacaagaagta 6811815  T
Q  277 cc 278  Q
    ||    
T  6811814 cc 6811813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 177 - 244
Target Start/End: Complemental strand, 6832432 - 6832365
Alignment:
Q  177 gttgtgattattattctactacccggaccaaaccattcacggcttccacacaaagcctttagctgatc 244  Q
    |||||||| |||||| | || ||  ||||||||||||| ||  |||||||||||||||||||||||||    
T  6832432 gttgtgatgattattttgcttcctcgaccaaaccattcccgatttccacacaaagcctttagctgatc 6832365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 73 - 107
Target Start/End: Original strand, 7890541 - 7890575
Alignment:
Q  73 tgaatgcatgccaactgaaaagcttaagagattca 107  Q
    |||||||||||||||| ||||||||||||||||||    
T  7890541 tgaatgcatgccaactaaaaagcttaagagattca 7890575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 284 - 329
Target Start/End: Complemental strand, 8412929 - 8412884
Alignment:
Q  284 ctgggcaagtctttccttcaatatatttttccctgattcgatgtca 329  Q
    |||||||||||||||||||| |||| ||||||||||| | ||||||    
T  8412929 ctgggcaagtctttccttcagtatacttttccctgatactatgtca 8412884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0373 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: scaffold0373
Description:

Target: scaffold0373; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 18 - 332
Target Start/End: Original strand, 11527 - 11841
Alignment:
Q  18 taagaaatcacatctgttgaatgtttcgcaaaatcttctatcggacttggttgcttgaatgcatgccaactgaaaagcttaagagattcactttcatcca 117  Q
    |||| ||||||||||||||||||||| ||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11527 taagcaatcacatctgttgaatgtttagcaaaatattctattggacttggttgcttgaatgcatgccaactgaaaagcttaagagattcactttcatcca 11626  T
Q  118 tttcttctattgtatacacttgataaacttcatacaatctaagaagacgcatatttctagttgtgattattattctactacccggaccaaaccattcacg 217  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||| | |||||||| |||||||||||||||||||| ||||||||||||||||  ||    
T  11627 tttcttctattgtatacacctgataaacttcatacaatctaagaagatgaatatttcttgttgtgattattattctactccccggaccaaaccatttgcg 11726  T
Q  218 gcttccacacaaagcctttagctgatcgatttcattgacatcatcaagcacaagaagtaccttctgctgggcaagtctttccttcaatatatttttccct 317  Q
    ||| |||||||| ||||||||||| || | |||||| |||||||||||||||||||||| | | | ||||||||||||||||||||||||||||||||||    
T  11727 gctaccacacaatgcctttagctggtccaattcattcacatcatcaagcacaagaagtatccttttctgggcaagtctttccttcaatatatttttccct 11826  T
Q  318 gattcgatgtcacgt 332  Q
    ||||| || ||||||    
T  11827 gattctatatcacgt 11841  T

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Target: chr7 (Bit Score: 57; Significance: 9e-24; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 68 - 232
Target Start/End: Original strand, 36215590 - 36215754
Alignment:
Q  68 ttgcttgaatgcatgccaactgaaaagcttaagagattcactttcatccatttcttctattgtatacacttgataaacttcatacaatctaagaagacgc 167  Q
    ||||||||||||||||||||| ||||||| ||  ||||||||||||||||||||||  ||||  || ||||| | ||||  || |  |||||| | | ||    
T  36215590 ttgcttgaatgcatgccaactaaaaagctcaattgattcactttcatccatttctttcattgcgtatacttggtcaactctattccctctaagtatatgc 36215689  T
Q  168 atatttctagttgtgattattattctactacccggaccaaaccattcacggcttccacacaaagc 232  Q
     ||| |||||||||||| ||||||||||| |||  ||||||||||| ||| ||||||||||||||    
T  36215690 ctatctctagttgtgatgattattctactccccacaccaaaccattgacgacttccacacaaagc 36215754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 46 - 136
Target Start/End: Original strand, 34727413 - 34727503
Alignment:
Q  46 caaaatcttctatcggacttggttgcttgaatgcatgccaactgaaaagcttaagagattcactttcatccatttcttctattgtatacac 136  Q
    ||||| ||||||| ||| ||||||||||||||||||||||||| ||||||| |||||||||| |  ||||||||||||  ||| |||||||    
T  34727413 caaaaccttctataggaattggttgcttgaatgcatgccaactaaaaagctcaagagattcattgccatccatttctttcattctatacac 34727503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 46 - 107
Target Start/End: Original strand, 34730571 - 34730632
Alignment:
Q  46 caaaatcttctatcggacttggttgcttgaatgcatgccaactgaaaagcttaagagattca 107  Q
    ||||| ||||||| ||| |||||||||||||| |||||||||||||||||| ||||||||||    
T  34730571 caaaaccttctataggaattggttgcttgaatacatgccaactgaaaagctcaagagattca 34730632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 64 - 136
Target Start/End: Complemental strand, 18929295 - 18929223
Alignment:
Q  64 ttggttgcttgaatgcatgccaactgaaaagcttaagagattcactttcatccatttcttctattgtatacac 136  Q
    ||||||||||||||||||||||||| ||||||| |||||||||| | || ||||||||||  ||| |||||||    
T  18929295 ttggttgcttgaatgcatgccaactaaaaagctcaagagattcattgtcgtccatttctttcattctatacac 18929223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 45 - 119
Target Start/End: Original strand, 34721095 - 34721169
Alignment:
Q  45 gcaaaatcttctatcggacttggttgcttgaatgcatgccaactgaaaagcttaagagattcactttcatccatt 119  Q
    |||||| ||||| | ||| |||||||||||||||||| |||||| ||||| | |||||||||||| |||||||||    
T  34721095 gcaaaaccttctcttggaattggttgcttgaatgcataccaactaaaaagttcaagagattcactctcatccatt 34721169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 46 - 107
Target Start/End: Original strand, 34735170 - 34735231
Alignment:
Q  46 caaaatcttctatcggacttggttgcttgaatgcatgccaactgaaaagcttaagagattca 107  Q
    ||||| ||||||| ||| ||||||| ||||||||||||||||| ||||||| ||||||||||    
T  34735170 caaaaccttctataggaattggttgtttgaatgcatgccaactaaaaagctcaagagattca 34735231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 45 - 107
Target Start/End: Complemental strand, 18924399 - 18924337
Alignment:
Q  45 gcaaaatcttctatcggacttggttgcttgaatgcatgccaactgaaaagcttaagagattca 107  Q
    ||||||||||| || ||| |||||||||||||||||| | |||| ||||||| ||||||||||    
T  18924399 gcaaaatcttcaataggatttggttgcttgaatgcatacaaactaaaaagctcaagagattca 18924337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 56; Significance: 4e-23; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 45 - 232
Target Start/End: Original strand, 5148634 - 5148821
Alignment:
Q  45 gcaaaatcttctatcggacttggttgcttgaatgcatgccaactgaaaagcttaagagattcactttcatccatttcttctattgtatacacttgataaa 144  Q
    |||||||||||| | ||||| | ||||||||||||||||||||| |||||| |||  ||||||| ||||||||||||||  ||| | || || || | ||    
T  5148634 gcaaaatcttctctaggactcgcttgcttgaatgcatgccaactaaaaagcataattgattcaccttcatccatttctttcattttgtatacatggtcaa 5148733  T
Q  145 cttcatacaatctaagaagacgcatatttctagttgtgattattattctactacccggaccaaaccattcacggcttccacacaaagc 232  Q
    ||  || |  ||| || | | |||||| |||||||||||| ||||||||||| ||||  |||||||||| ||| ||||||||||||||    
T  5148734 ctctattccctctcagtatatgcatatctctagttgtgataattattctacttcccgagccaaaccattgacgacttccacacaaagc 5148821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 45 - 123
Target Start/End: Original strand, 5075406 - 5075484
Alignment:
Q  45 gcaaaatcttctatcggacttggttgcttgaatgcatgccaactgaaaagcttaagagattcactttcatccatttctt 123  Q
    |||||||||||||| ||||||| ||| ||||||||||||||||| ||||||| ||  ||||||||||||||||||||||    
T  5075406 gcaaaatcttctataggacttgcttgtttgaatgcatgccaactaaaaagctcaattgattcactttcatccatttctt 5075484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 47 - 124
Target Start/End: Complemental strand, 5381974 - 5381897
Alignment:
Q  47 aaaatcttctatcggacttggttgcttgaatgcatgccaactgaaaagcttaagagattcactttcatccatttcttc 124  Q
    |||||||||| | || ||||||||||||||||||||||| || ||||||| ||  |||||||  ||||||||| ||||    
T  5381974 aaaatcttctgtaggccttggttgcttgaatgcatgccagctaaaaagctcaattgattcacaatcatccattgcttc 5381897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 47 - 118
Target Start/End: Original strand, 5104549 - 5104620
Alignment:
Q  47 aaaatcttctatcggacttggttgcttgaatgcatgccaactgaaaagcttaagagattcactttcatccat 118  Q
    |||||||| | |||||||   ||||||||||||||||||||| || |||| ||  |||||||||||||||||    
T  5104549 aaaatcttttgtcggactcacttgcttgaatgcatgccaactaaatagctcaattgattcactttcatccat 5104620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 60 - 123
Target Start/End: Complemental strand, 5342006 - 5341943
Alignment:
Q  60 ggacttggttgcttgaatgcatgccaactgaaaagcttaagagattcactttcatccatttctt 123  Q
    ||||||| ||||||||| ||||||||||| || |||| ||| |||||| || ||||||||||||    
T  5342006 ggacttgcttgcttgaacgcatgccaactaaatagctcaagtgattcatttgcatccatttctt 5341943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 177 - 232
Target Start/End: Complemental strand, 5423948 - 5423893
Alignment:
Q  177 gttgtgattattattctactacccggaccaaaccattcacggcttccacacaaagc 232  Q
    |||||||| ||||||||||| |||| ||||||||||| | | ||||||||||||||    
T  5423948 gttgtgataattattctactccccgaaccaaaccatttatgacttccacacaaagc 5423893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 68 - 118
Target Start/End: Original strand, 5068772 - 5068822
Alignment:
Q  68 ttgcttgaatgcatgccaactgaaaagcttaagagattcactttcatccat 118  Q
    |||||||||||| |||||||| || |||||||  |||||||||||||||||    
T  5068772 ttgcttgaatgcgtgccaactaaatagcttaattgattcactttcatccat 5068822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 180 - 238
Target Start/End: Original strand, 5068884 - 5068942
Alignment:
Q  180 gtgattattattctactacccggaccaaaccattcacggcttccacacaaagcctttag 238  Q
    ||||| ||||||||||| |||| ||||||||| | ||| |||||||||||||| |||||    
T  5068884 gtgatgattattctacttcccgaaccaaaccacttacgacttccacacaaagcatttag 5068942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 45 - 119
Target Start/End: Original strand, 5183627 - 5183701
Alignment:
Q  45 gcaaaatcttctatcggacttggttgcttgaatgcatgccaactgaaaagcttaagagattcactttcatccatt 119  Q
    |||||| ||||| | |||| || ||||||||||||||||||||| || |||| ||  ||||| ||||||||||||    
T  5183627 gcaaaaccttctctaggacctgcttgcttgaatgcatgccaactaaatagctcaattgattcgctttcatccatt 5183701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 118
Target Start/End: Original strand, 5356306 - 5356364
Alignment:
Q  60 ggacttggttgcttgaatgcatgccaactgaaaagcttaagagattcactttcatccat 118  Q
    ||||||| ||||||||||||||||||||| || |||| ||  |||||||| ||||||||    
T  5356306 ggacttgcttgcttgaatgcatgccaactaaatagctcaattgattcactgtcatccat 5356364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 68 - 118
Target Start/End: Complemental strand, 5368764 - 5368714
Alignment:
Q  68 ttgcttgaatgcatgccaactgaaaagcttaagagattcactttcatccat 118  Q
    |||||| ||||||||||||||||| |||| ||  |||||||||||||||||    
T  5368764 ttgcttaaatgcatgccaactgaatagctcaattgattcactttcatccat 5368714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 45 - 123
Target Start/End: Complemental strand, 5395370 - 5395292
Alignment:
Q  45 gcaaaatcttctatcggacttggttgcttgaatgcatgccaactgaaaagcttaagagattcactttcatccatttctt 123  Q
    |||||||||||| | ||||| | ||||||||||||||||||||| || |||| ||  ||||| ||| | ||||||||||    
T  5395370 gcaaaatcttctcttggactcgcttgcttgaatgcatgccaactaaagagctcaattgattcgcttccgtccatttctt 5395292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 166 - 232
Target Start/End: Complemental strand, 5431613 - 5431547
Alignment:
Q  166 gcatatttctagttgtgattattattctactacccggaccaaaccattcacggcttccacacaaagc 232  Q
    |||||||||| |||||||| ||||||||||| ||   ||||||||| | ||| ||||||||||||||    
T  5431613 gcatatttctggttgtgataattattctactccctaaaccaaaccaattacgacttccacacaaagc 5431547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 123
Target Start/End: Complemental strand, 5175192 - 5175115
Alignment:
Q  46 caaaatcttctatcggacttggttgcttgaatgcatgccaactgaaaagcttaagagattcactttcatccatttctt 123  Q
    |||| |||||||| |||||   ||| ||||||||||||||| | || |||| ||  ||||||||||||||||||||||    
T  5175192 caaattcttctatgggactcacttgtttgaatgcatgccaattaaagagctcaattgattcactttcatccatttctt 5175115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 118
Target Start/End: Complemental strand, 5424080 - 5424007
Alignment:
Q  45 gcaaaatcttctatcggacttggttgcttgaatgcatgccaactgaaaagcttaagagattcactttcatccat 118  Q
    |||||||||| | | ||||| | ||||||||| ||||||||||| || |||| ||  |||||||||||||||||    
T  5424080 gcaaaatcttttgtaggactcgcttgcttgaaggcatgccaacttaatagctcaattgattcactttcatccat 5424007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 186 - 238
Target Start/End: Complemental strand, 5094227 - 5094175
Alignment:
Q  186 attattctactacccggaccaaaccattcacggcttccacacaaagcctttag 238  Q
    ||||||||||| |||||||||||||||| | | ||||| |||||||| |||||    
T  5094227 attattctactccccggaccaaaccatttatgacttccgcacaaagcatttag 5094175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 68 - 120
Target Start/End: Complemental strand, 5431711 - 5431659
Alignment:
Q  68 ttgcttgaatgcatgccaactgaaaagcttaagagattcactttcatccattt 120  Q
    ||||||||||||||||||  | ||||||| ||| |||||||| ||||||||||    
T  5431711 ttgcttgaatgcatgccatataaaaagctcaagtgattcactgtcatccattt 5431659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 68 - 118
Target Start/End: Original strand, 10366 - 10416
Alignment:
Q  68 ttgcttgaatgcatgccaactgaaaagcttaagagattcactttcatccat 118  Q
    ||||||||||||||||||||| ||||||| ||  |||||||| ||||||||    
T  10366 ttgcttgaatgcatgccaactaaaaagctcaattgattcactatcatccat 10416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 238
Target Start/End: Original strand, 10475 - 10536
Alignment:
Q  177 gttgtgattattattctactacccggaccaaaccattcacggcttccacacaaagcctttag 238  Q
    ||||| || ||||||||| | || | ||||||||||||||| |||||||||||||| |||||    
T  10475 gttgtaatgattattctagtccctgaaccaaaccattcacgacttccacacaaagcatttag 10536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 123
Target Start/End: Original strand, 6907450 - 6907495
Alignment:
Q  78 gcatgccaactgaaaagcttaagagattcactttcatccatttctt 123  Q
    ||||||||||||||||||| ||| || ||| |||||||||||||||    
T  6907450 gcatgccaactgaaaagctcaagggactcattttcatccatttctt 6907495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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