View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2512_high_3 (Length: 693)
Name: NF2512_high_3
Description: NF2512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2512_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 164; Significance: 3e-87; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 164; E-Value: 3e-87
Query Start/End: Original strand, 263 - 458
Target Start/End: Original strand, 13557550 - 13557745
Alignment:
| Q |
263 |
ttatattgcagctggatgggaaaatagttgcacctgctaagggagcattgaaggataagtcatattggattaggatccaatatataaaccatcccacaat |
362 |
Q |
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| T |
13557550 |
ttattttgcagctggatgggaaaatagttgcacctgctaagggagcattgaaggataagtcatattggattaggatccaatatataaaccatctcacaat |
13557649 |
T |
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| Q |
363 |
agatggtggaataggtggatcaattgatggttatggttctacttggtggcaatgcaaatcttgctttcgacctacggtatgattattcctttttta |
458 |
Q |
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| T |
13557650 |
agatggtggaataggtggatcaattgagggctatggctctacttggtggcagtgcaaaacttgctctcgacctacggtatgattattcctttttta |
13557745 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 596 - 674
Target Start/End: Original strand, 13557869 - 13557947
Alignment:
| Q |
596 |
ttgatggtgcaggccttgcgtttccattcctccaatgatctcactgttcgtaacttgaggattacaaataccccaggag |
674 |
Q |
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| T |
13557869 |
ttgattgtgcaggccttgtttttccattcctccaatgatctaactgttcgtaatttgaggattacaaataccccaggag |
13557947 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 63
Target Start/End: Original strand, 7593142 - 7593189
Alignment:
| Q |
17 |
tgtgcatttatat-atatatttactacaaacctatagtaattaacatt |
63 |
Q |
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| T |
7593142 |
tgtgcatttatatcatatatttacttcaaaactatagtaattaacatt |
7593189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 13 - 72
Target Start/End: Original strand, 8019962 - 8020022
Alignment:
| Q |
13 |
aatatgtgcatttatat-atatatttactacaaacctatagtaattaacattgtcatttat |
72 |
Q |
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| T |
8019962 |
aatatgtgcatttatatcatgtatttacatcaaaactatagtaatgaacattgccatttat |
8020022 |
T |
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