View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2512_high_36 (Length: 315)
Name: NF2512_high_36
Description: NF2512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2512_high_36 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 258; Significance: 1e-144; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 18 - 315
Target Start/End: Complemental strand, 54075983 - 54075695
Alignment:
| Q |
18 |
tgtatcacattccacaaacttctatcaactgcttctaccaacacaattgatttgtgtctttgttccactttcctccgacacgtgtacccttgtgttaccc |
117 |
Q |
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| T |
54075983 |
tgtatcacattccacaaacttctatcaactgcttctaccaacacaattgatttgtgtctttgttccactttcctccgacacgtgtacccctgtgttaccc |
54075884 |
T |
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| Q |
118 |
cttctttcgggtgttgtctttgacctgatggcccaaattctaaacacatcattgacacctgtccaattctactttgttctccacccttgtcctcccgcgg |
217 |
Q |
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| T |
54075883 |
cttctttcgggtgttgtcgttgacctgatggcccaaattctaaacacatcattgacacctgtccaattcta---------ccacccttgtcctcccgcgg |
54075793 |
T |
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| Q |
218 |
taaaattgatttcaacgaaggtaattcatttgaattgaagtggaacccattatttctccaagagggtaaatacatgaattcatcaacatccacataca |
315 |
Q |
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| T |
54075792 |
taaaattgatttcaacgaaggtaattcatttgaattgaagtggaacccattatttctccaagagggtaaatacatgaattcatcaacatccacataca |
54075695 |
T |
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