View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2512_high_37 (Length: 309)
Name: NF2512_high_37
Description: NF2512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2512_high_37 |
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Alignment Details
Target: chr2 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 11 - 291
Target Start/End: Original strand, 45097054 - 45097329
Alignment:
| Q |
11 |
atgaaatagagacaattctctcatctgttcttcaatcaacggccaagggacaaccttagaagacttgaaagccaagaaaacaagcatatttctcatgagc |
110 |
Q |
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| T |
45097054 |
atgaaatagagacaattctctcatctgttcttcaatcaacggccacgggacaaccttagaagacttgaaagccaagaaaacaagcatatttctcatgagc |
45097153 |
T |
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| Q |
111 |
actttatgctgcatttgtagcaccaatgagttcagtattaagaacatttgagatccctaaattgcaggcaaattaaaaggacctaaaaactaagaattgc |
210 |
Q |
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| T |
45097154 |
actctatgctgcattcgtagcaccaatgagttcagtattaagaacatttgagatccctaaattgcaggc-----aaaaggacctaaaaactaagaattgc |
45097248 |
T |
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| Q |
211 |
aatttcagaaaatgccaccacaaactgcgaggggcctaaactcctcaaaaggcaccattaggaggctcgattttaacattg |
291 |
Q |
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| T |
45097249 |
aatttcagaaaatgccaccacaaactgcgaggggcctaaactcctcaagaggcaccattaggaggctcgattttaacattg |
45097329 |
T |
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Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 52 - 93
Target Start/End: Original strand, 11775891 - 11775932
Alignment:
| Q |
52 |
gccaagggacaaccttagaagacttgaaagccaagaaaacaa |
93 |
Q |
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| T |
11775891 |
gccaagggacaaccttagaagacttgaaagctaagaaaacaa |
11775932 |
T |
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