View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2512_high_39 (Length: 302)

Name: NF2512_high_39
Description: NF2512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2512_high_39
NF2512_high_39
[»] chr6 (10 HSPs)
chr6 (164-215)||(767925-767974)
chr6 (165-215)||(5491440-5491488)
chr6 (165-215)||(32448479-32448527)
chr6 (164-215)||(19680756-19680805)
chr6 (165-215)||(3566829-3566877)
chr6 (165-215)||(12265190-12265238)
chr6 (165-215)||(33684143-33684191)
chr6 (165-215)||(12462298-12462346)
chr6 (165-215)||(33023788-33023836)
chr6 (186-215)||(10685219-10685248)
[»] chr5 (9 HSPs)
chr5 (164-215)||(35612056-35612105)
chr5 (165-215)||(21021755-21021803)
chr5 (165-215)||(11092677-11092725)
chr5 (165-215)||(17852647-17852695)
chr5 (165-215)||(19442698-19442748)
chr5 (165-213)||(14322773-14322819)
chr5 (186-215)||(15816065-15816094)
chr5 (186-215)||(15832378-15832407)
chr5 (186-215)||(40975842-40975871)
[»] chr4 (7 HSPs)
chr4 (165-213)||(47171350-47171396)
chr4 (164-215)||(30031793-30031842)
chr4 (165-215)||(36703552-36703600)
chr4 (165-215)||(39136990-39137038)
chr4 (171-215)||(8117495-8117537)
chr4 (186-215)||(14479440-14479469)
chr4 (186-215)||(25108472-25108501)
[»] chr7 (11 HSPs)
chr7 (164-215)||(35867600-35867649)
chr7 (165-215)||(21832198-21832246)
chr7 (165-215)||(44525273-44525321)
chr7 (165-215)||(20347061-20347109)
chr7 (165-215)||(26157790-26157838)
chr7 (165-211)||(26760670-26760714)
chr7 (165-215)||(38574708-38574756)
chr7 (170-215)||(32436612-32436655)
chr7 (171-215)||(6345280-6345322)
chr7 (186-215)||(12422738-12422767)
chr7 (186-215)||(18868610-18868639)
[»] scaffold0361 (1 HSPs)
scaffold0361 (165-215)||(7443-7491)
[»] chr8 (10 HSPs)
chr8 (165-215)||(7762029-7762077)
chr8 (165-215)||(43536121-43536169)
chr8 (165-213)||(7920919-7920965)
chr8 (165-215)||(16593243-16593291)
chr8 (165-215)||(17950759-17950807)
chr8 (165-215)||(35279059-35279107)
chr8 (171-215)||(10787135-10787177)
chr8 (186-215)||(41865871-41865900)
chr8 (186-215)||(44833770-44833799)
chr8 (187-215)||(4586388-4586416)
[»] chr3 (8 HSPs)
chr3 (165-215)||(6223850-6223898)
chr3 (165-215)||(19841960-19842008)
chr3 (165-211)||(28588755-28588799)
chr3 (186-215)||(25396418-25396447)
chr3 (186-215)||(42737591-42737620)
chr3 (186-215)||(53594656-53594685)
chr3 (186-215)||(54279635-54279664)
chr3 (187-215)||(49408564-49408592)
[»] chr2 (7 HSPs)
chr2 (165-215)||(26544642-26544690)
chr2 (165-215)||(10362194-10362242)
chr2 (173-215)||(17158136-17158176)
chr2 (165-215)||(36073092-36073140)
chr2 (165-215)||(43066635-43066683)
chr2 (186-215)||(26650508-26650537)
chr2 (168-211)||(32348023-32348064)
[»] chr1 (9 HSPs)
chr1 (165-211)||(16988076-16988120)
chr1 (165-215)||(47310236-47310284)
chr1 (165-215)||(35373986-35374034)
chr1 (165-215)||(39619736-39619784)
chr1 (165-214)||(44242853-44242900)
chr1 (171-215)||(11748369-11748411)
chr1 (272-301)||(35795966-35795995)
chr1 (186-215)||(38203380-38203409)
chr1 (274-302)||(1053489-1053517)
[»] scaffold0022 (1 HSPs)
scaffold0022 (165-215)||(138514-138562)
[»] scaffold0010 (1 HSPs)
scaffold0010 (186-215)||(167754-167783)


Alignment Details
Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 164 - 215
Target Start/End: Complemental strand, 767974 - 767925
Alignment:
Q  164 ctttgggaaatatttttacaatatattctacacatttctgcataatttcatt 215  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  767974 ctttgggaaatatttttacaatat--tctacacatttctgcataatttcatt 767925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 165 - 215
Target Start/End: Original strand, 5491440 - 5491488
Alignment:
Q  165 tttgggaaatatttttacaatatattctacacatttctgcataatttcatt 215  Q
    |||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  5491440 tttgggaaatatttttacaatat--tctacacatttctgcataatttcatt 5491488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 165 - 215
Target Start/End: Complemental strand, 32448527 - 32448479
Alignment:
Q  165 tttgggaaatatttttacaatatattctacacatttctgcataatttcatt 215  Q
    ||||||||||||||||||||||||  |||||||||||||||||||||||||    
T  32448527 tttgggaaatatttttacaatata--ctacacatttctgcataatttcatt 32448479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 164 - 215
Target Start/End: Original strand, 19680756 - 19680805
Alignment:
Q  164 ctttgggaaatatttttacaatatattctacacatttctgcataatttcatt 215  Q
    ||||||||||||||||||||||||  ||||||||||| ||||||||||||||    
T  19680756 ctttgggaaatatttttacaatat--tctacacatttttgcataatttcatt 19680805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 165 - 215
Target Start/End: Complemental strand, 3566877 - 3566829
Alignment:
Q  165 tttgggaaatatttttacaatatattctacacatttctgcataatttcatt 215  Q
    |||||||||||||||||||||||  |||||||||||||||| |||||||||    
T  3566877 tttgggaaatatttttacaatat--tctacacatttctgcacaatttcatt 3566829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 165 - 215
Target Start/End: Original strand, 12265190 - 12265238
Alignment:
Q  165 tttgggaaatatttttacaatatattctacacatttctgcataatttcatt 215  Q
    |||||||||||||||||||||||  |||||||||||||||| |||||||||    
T  12265190 tttgggaaatatttttacaatat--tctacacatttctgcacaatttcatt 12265238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 165 - 215
Target Start/End: Complemental strand, 33684191 - 33684143
Alignment:
Q  165 tttgggaaatatttttacaatatattctacacatttctgcataatttcatt 215  Q
    |||||||||||||||||||||||  |||||||||||||||| |||||||||    
T  33684191 tttgggaaatatttttacaatat--tctacacatttctgcacaatttcatt 33684143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 165 - 215
Target Start/End: Original strand, 12462298 - 12462346
Alignment:
Q  165 tttgggaaatatttttacaatatattctacacatttctgcataatttcatt 215  Q
    ||||| |||||||||||||||||  |||||||||||||||| |||||||||    
T  12462298 tttggaaaatatttttacaatat--tctacacatttctgcacaatttcatt 12462346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 165 - 215
Target Start/End: Original strand, 33023788 - 33023836
Alignment:
Q  165 tttgggaaatatttttacaatatattctacacatttctgcataatttcatt 215  Q
    |||||||||||||||||||  ||||||||||||||| |||| |||||||||    
T  33023788 tttgggaaatatttttaca--atattctacacatttttgcacaatttcatt 33023836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 215
Target Start/End: Original strand, 10685219 - 10685248
Alignment:
Q  186 atattctacacatttctgcataatttcatt 215  Q
    ||||||||||||||||||||||||||||||    
T  10685219 atattctacacatttctgcataatttcatt 10685248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 164 - 215
Target Start/End: Original strand, 35612056 - 35612105
Alignment:
Q  164 ctttgggaaatatttttacaatatattctacacatttctgcataatttcatt 215  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  35612056 ctttgggaaatatttttacaatat--tctacacatttctgcataatttcatt 35612105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 165 - 215
Target Start/End: Original strand, 21021755 - 21021803
Alignment:
Q  165 tttgggaaatatttttacaatatattctacacatttctgcataatttcatt 215  Q
    |||||||||||||||||||||||  |||||||||||||||| |||||||||    
T  21021755 tttgggaaatatttttacaatat--tctacacatttctgcacaatttcatt 21021803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 165 - 215
Target Start/End: Original strand, 11092677 - 11092725
Alignment:
Q  165 tttgggaaatatttttacaatatattctacacatttctgcataatttcatt 215  Q
    ||||| |||||||||||||||||  |||||||||||||||| |||||||||    
T  11092677 tttggaaaatatttttacaatat--tctacacatttctgcacaatttcatt 11092725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 165 - 215
Target Start/End: Complemental strand, 17852695 - 17852647
Alignment:
Q  165 tttgggaaatatttttacaatatattctacacatttctgcataatttcatt 215  Q
    ||||||||| |||||||||||||  |||||||||||||||| |||||||||    
T  17852695 tttgggaaagatttttacaatat--tctacacatttctgcacaatttcatt 17852647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 165 - 215
Target Start/End: Original strand, 19442698 - 19442748
Alignment:
Q  165 tttgggaaatatttttacaatatattctacacatttctgcataatttcatt 215  Q
    ||||||| | |||||||||||||  |||||||||||||||| |||||||||    
T  19442698 tttgggagagatttttacaatatgatctacacatttctgcacaatttcatt 19442748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 213
Target Start/End: Complemental strand, 14322819 - 14322773
Alignment:
Q  165 tttgggaaatatttttacaatatattctacacatttctgcataatttca 213  Q
    ||||||||| |||||||||||||  |||||||||||||||| |||||||    
T  14322819 tttgggaaagatttttacaatat--tctacacatttctgcacaatttca 14322773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 215
Target Start/End: Original strand, 15816065 - 15816094
Alignment:
Q  186 atattctacacatttctgcataatttcatt 215  Q
    ||||||||||||||||||||||||||||||    
T  15816065 atattctacacatttctgcataatttcatt 15816094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 215
Target Start/End: Original strand, 15832378 - 15832407
Alignment:
Q  186 atattctacacatttctgcataatttcatt 215  Q
    ||||||||||||||||||||||||||||||    
T  15832378 atattctacacatttctgcataatttcatt 15832407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 215
Target Start/End: Original strand, 40975842 - 40975871
Alignment:
Q  186 atattctacacatttctgcataatttcatt 215  Q
    ||||||||||||||||||||||||||||||    
T  40975842 atattctacacatttctgcataatttcatt 40975871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 165 - 213
Target Start/End: Original strand, 47171350 - 47171396
Alignment:
Q  165 tttgggaaatatttttacaatatattctacacatttctgcataatttca 213  Q
    |||||||||||||||||||||||  ||||||||||||||||||||||||    
T  47171350 tttgggaaatatttttacaatat--tctacacatttctgcataatttca 47171396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 164 - 215
Target Start/End: Original strand, 30031793 - 30031842
Alignment:
Q  164 ctttgggaaatatttttacaatatattctacacatttctgcataatttcatt 215  Q
    ||||||||||||||||||||||||  ||||||||||||| ||||||||||||    
T  30031793 ctttgggaaatatttttacaatat--tctacacatttctacataatttcatt 30031842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 165 - 215
Target Start/End: Complemental strand, 36703600 - 36703552
Alignment:
Q  165 tttgggaaatatttttacaatatattctacacatttctgcataatttcatt 215  Q
    |||||||||||||||||||||||  |||||| |||||||||||||||||||    
T  36703600 tttgggaaatatttttacaatat--tctacatatttctgcataatttcatt 36703552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 165 - 215
Target Start/End: Original strand, 39136990 - 39137038
Alignment:
Q  165 tttgggaaatatttttacaatatattctacacatttctgcataatttcatt 215  Q
    ||||||||| |||||||||||||  |||||||||||||||| |||||||||    
T  39136990 tttgggaaagatttttacaatat--tctacacatttctgcacaatttcatt 39137038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 215
Target Start/End: Original strand, 8117495 - 8117537
Alignment:
Q  171 aaatatttttacaatatattctacacatttctgcataatttcatt 215  Q
    |||||||||||||||||  |||||||||||||||| |||||||||    
T  8117495 aaatatttttacaatat--tctacacatttctgcacaatttcatt 8117537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 215
Target Start/End: Complemental strand, 14479469 - 14479440
Alignment:
Q  186 atattctacacatttctgcataatttcatt 215  Q
    ||||||||||||||||||||||||||||||    
T  14479469 atattctacacatttctgcataatttcatt 14479440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 215
Target Start/End: Complemental strand, 25108501 - 25108472
Alignment:
Q  186 atattctacacatttctgcataatttcatt 215  Q
    ||||||||||||||||||||||||||||||    
T  25108501 atattctacacatttctgcataatttcatt 25108472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000007; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 164 - 215
Target Start/End: Original strand, 35867600 - 35867649
Alignment:
Q  164 ctttgggaaatatttttacaatatattctacacatttctgcataatttcatt 215  Q
    ||||||||||||||||||||||||  ||||| ||||||||||||||||||||    
T  35867600 ctttgggaaatatttttacaatat--tctactcatttctgcataatttcatt 35867649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 165 - 215
Target Start/End: Complemental strand, 21832246 - 21832198
Alignment:
Q  165 tttgggaaatatttttacaatatattctacacatttctgcataatttcatt 215  Q
    |||||||||| ||||||||||||  ||||||||||||||||||||||||||    
T  21832246 tttgggaaatttttttacaatat--tctacacatttctgcataatttcatt 21832198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 165 - 215
Target Start/End: Complemental strand, 44525321 - 44525273
Alignment:
Q  165 tttgggaaatatttttacaatatattctacacatttctgcataatttcatt 215  Q
    |||||||||||||||||||||||   |||||||||||||||||||||||||    
T  44525321 tttgggaaatatttttacaatatg--ctacacatttctgcataatttcatt 44525273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 165 - 215
Target Start/End: Complemental strand, 20347109 - 20347061
Alignment:
Q  165 tttgggaaatatttttacaatatattctacacatttctgcataatttcatt 215  Q
    ||||| |||||||||||||||||  |||||||||||||||| |||||||||    
T  20347109 tttggaaaatatttttacaatat--tctacacatttctgcacaatttcatt 20347061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 165 - 215
Target Start/End: Original strand, 26157790 - 26157838
Alignment:
Q  165 tttgggaaatatttttacaatatattctacacatttctgcataatttcatt 215  Q
    |||||||||||||||||||  ||||| |||||||||||||| |||||||||    
T  26157790 tttgggaaatatttttaca--atattatacacatttctgcacaatttcatt 26157838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 165 - 211
Target Start/End: Original strand, 26760670 - 26760714
Alignment:
Q  165 tttgggaaatatttttacaatatattctacacatttctgcataattt 211  Q
    |||||||||||||||||||  |||||||||||||||||||| |||||    
T  26760670 tttgggaaatatttttaca--atattctacacatttctgcacaattt 26760714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 165 - 215
Target Start/End: Complemental strand, 38574756 - 38574708
Alignment:
Q  165 tttgggaaatatttttacaatatattctacacatttctgcataatttcatt 215  Q
    ||||| |||||||||||||||||  |||||||||||||||| |||||||||    
T  38574756 tttggaaaatatttttacaatat--tctacacatttctgcacaatttcatt 38574708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 170 - 215
Target Start/End: Complemental strand, 32436655 - 32436612
Alignment:
Q  170 gaaatatttttacaatatattctacacatttctgcataatttcatt 215  Q
    ||||||||||||||||||  |||||||||||||||| |||||||||    
T  32436655 gaaatatttttacaatat--tctacacatttctgcagaatttcatt 32436612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 215
Target Start/End: Complemental strand, 6345322 - 6345280
Alignment:
Q  171 aaatatttttacaatatattctacacatttctgcataatttcatt 215  Q
    |||||||||||||||||  |||||||||||||||| |||||||||    
T  6345322 aaatatttttacaatat--tctacacatttctgcacaatttcatt 6345280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 215
Target Start/End: Complemental strand, 12422767 - 12422738
Alignment:
Q  186 atattctacacatttctgcataatttcatt 215  Q
    ||||||||||||||||||||||||||||||    
T  12422767 atattctacacatttctgcataatttcatt 12422738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 215
Target Start/End: Original strand, 18868610 - 18868639
Alignment:
Q  186 atattctacacatttctgcataatttcatt 215  Q
    ||||||||||||||||||||||||||||||    
T  18868610 atattctacacatttctgcataatttcatt 18868639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0361 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 165 - 215
Target Start/End: Complemental strand, 7491 - 7443
Alignment:
Q  165 tttgggaaatatttttacaatatattctacacatttctgcataatttcatt 215  Q
    |||||||||||||||||||||||  |||||||||||||||| |||||||||    
T  7491 tttgggaaatatttttacaatat--tctacacatttctgcacaatttcatt 7443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 165 - 215
Target Start/End: Original strand, 7762029 - 7762077
Alignment:
Q  165 tttgggaaatatttttacaatatattctacacatttctgcataatttcatt 215  Q
    |||||||||||||||||||||||  |||||||||||||||| |||||||||    
T  7762029 tttgggaaatatttttacaatat--tctacacatttctgcacaatttcatt 7762077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 165 - 215
Target Start/End: Original strand, 43536121 - 43536169
Alignment:
Q  165 tttgggaaatatttttacaatatattctacacatttctgcataatttcatt 215  Q
    |||||||||||||||||||||||  |||||||||||||||| |||||||||    
T  43536121 tttgggaaatatttttacaatat--tctacacatttctgcacaatttcatt 43536169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 165 - 213
Target Start/End: Complemental strand, 7920965 - 7920919
Alignment:
Q  165 tttgggaaatatttttacaatatattctacacatttctgcataatttca 213  Q
    ||||||||||||||||||||||| ||  |||||||||||||||||||||    
T  7920965 tttgggaaatatttttacaatatttt--acacatttctgcataatttca 7920919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 165 - 215
Target Start/End: Complemental strand, 16593291 - 16593243
Alignment:
Q  165 tttgggaaatatttttacaatatattctacacatttctgcataatttcatt 215  Q
    |||||||||||||||||||  ||||||| |||||||||||| |||||||||    
T  16593291 tttgggaaatatttttaca--atattctccacatttctgcacaatttcatt 16593243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 165 - 215
Target Start/End: Original strand, 17950759 - 17950807
Alignment:
Q  165 tttgggaaatatttttacaatatattctacacatttctgcataatttcatt 215  Q
    |||| ||||||||||||||||||  |||||||||||||||| |||||||||    
T  17950759 tttgcgaaatatttttacaatat--tctacacatttctgcacaatttcatt 17950807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 165 - 215
Target Start/End: Complemental strand, 35279107 - 35279059
Alignment:
Q  165 tttgggaaatatttttacaatatattctacacatttctgcataatttcatt 215  Q
    ||||||||||| |||||||||||  |||||||||||||||| |||||||||    
T  35279107 tttgggaaatacttttacaatat--tctacacatttctgcacaatttcatt 35279059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 215
Target Start/End: Complemental strand, 10787177 - 10787135
Alignment:
Q  171 aaatatttttacaatatattctacacatttctgcataatttcatt 215  Q
    |||||||||||||||||  |||||||||||||||| |||||||||    
T  10787177 aaatatttttacaatat--tctacacatttctgcacaatttcatt 10787135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 215
Target Start/End: Original strand, 41865871 - 41865900
Alignment:
Q  186 atattctacacatttctgcataatttcatt 215  Q
    ||||||||||||||||||||||||||||||    
T  41865871 atattctacacatttctgcataatttcatt 41865900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 215
Target Start/End: Complemental strand, 44833799 - 44833770
Alignment:
Q  186 atattctacacatttctgcataatttcatt 215  Q
    ||||||||||||||||||||||||||||||    
T  44833799 atattctacacatttctgcataatttcatt 44833770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 215
Target Start/End: Complemental strand, 4586416 - 4586388
Alignment:
Q  187 tattctacacatttctgcataatttcatt 215  Q
    |||||||||||||||||||||||||||||    
T  4586416 tattctacacatttctgcataatttcatt 4586388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 165 - 215
Target Start/End: Complemental strand, 6223898 - 6223850
Alignment:
Q  165 tttgggaaatatttttacaatatattctacacatttctgcataatttcatt 215  Q
    |||||||||||||||||||||||  ||||||||||| ||||||||||||||    
T  6223898 tttgggaaatatttttacaatat--tctacacatttatgcataatttcatt 6223850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 165 - 215
Target Start/End: Complemental strand, 19842008 - 19841960
Alignment:
Q  165 tttgggaaatatttttacaatatattctacacatttctgcataatttcatt 215  Q
    |||||||||||||||||||||||  |||||||||||||||| |||||||||    
T  19842008 tttgggaaatatttttacaatat--tctacacatttctgcacaatttcatt 19841960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 165 - 211
Target Start/End: Original strand, 28588755 - 28588799
Alignment:
Q  165 tttgggaaatatttttacaatatattctacacatttctgcataattt 211  Q
    |||||||||||||||||||  |||||||||||||||||||| |||||    
T  28588755 tttgggaaatatttttaca--atattctacacatttctgcacaattt 28588799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 215
Target Start/End: Complemental strand, 25396447 - 25396418
Alignment:
Q  186 atattctacacatttctgcataatttcatt 215  Q
    ||||||||||||||||||||||||||||||    
T  25396447 atattctacacatttctgcataatttcatt 25396418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 215
Target Start/End: Complemental strand, 42737620 - 42737591
Alignment:
Q  186 atattctacacatttctgcataatttcatt 215  Q
    ||||||||||||||||||||||||||||||    
T  42737620 atattctacacatttctgcataatttcatt 42737591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 215
Target Start/End: Original strand, 53594656 - 53594685
Alignment:
Q  186 atattctacacatttctgcataatttcatt 215  Q
    ||||||||||||||||||||||||||||||    
T  53594656 atattctacacatttctgcataatttcatt 53594685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 215
Target Start/End: Complemental strand, 54279664 - 54279635
Alignment:
Q  186 atattctacacatttctgcataatttcatt 215  Q
    ||||||||||||||||||||||||||||||    
T  54279664 atattctacacatttctgcataatttcatt 54279635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 215
Target Start/End: Complemental strand, 49408592 - 49408564
Alignment:
Q  187 tattctacacatttctgcataatttcatt 215  Q
    |||||||||||||||||||||||||||||    
T  49408592 tattctacacatttctgcataatttcatt 49408564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 165 - 215
Target Start/End: Original strand, 26544642 - 26544690
Alignment:
Q  165 tttgggaaatatttttacaatatattctacacatttctgcataatttcatt 215  Q
    |||||||||||||||||||||||  |||||||||||||||| |||||||||    
T  26544642 tttgggaaatatttttacaatat--tctacacatttctgcacaatttcatt 26544690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 165 - 215
Target Start/End: Complemental strand, 10362242 - 10362194
Alignment:
Q  165 tttgggaaatatttttacaatatattctacacatttctgcataatttcatt 215  Q
    ||||||||||||||||| |||||  |||||||||||||||| |||||||||    
T  10362242 tttgggaaatatttttagaatat--tctacacatttctgcacaatttcatt 10362194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 173 - 215
Target Start/End: Complemental strand, 17158176 - 17158136
Alignment:
Q  173 atatttttacaatatattctacacatttctgcataatttcatt 215  Q
    |||||||||||||||  ||||||||||||||||||||||||||    
T  17158176 atatttttacaatat--tctacacatttctgcataatttcatt 17158136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 165 - 215
Target Start/End: Original strand, 36073092 - 36073140
Alignment:
Q  165 tttgggaaatatttttacaatatattctacacatttctgcataatttcatt 215  Q
    ||||||| | |||||||||||||  ||||||||||||||||||||||||||    
T  36073092 tttgggagagatttttacaatat--tctacacatttctgcataatttcatt 36073140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 165 - 215
Target Start/End: Complemental strand, 43066683 - 43066635
Alignment:
Q  165 tttgggaaatatttttacaatatattctacacatttctgcataatttcatt 215  Q
    |||||||||||||||||||  |||||||||||||||||| | |||||||||    
T  43066683 tttgggaaatatttttaca--atattctacacatttctggacaatttcatt 43066635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 215
Target Start/End: Original strand, 26650508 - 26650537
Alignment:
Q  186 atattctacacatttctgcataatttcatt 215  Q
    ||||||||||||||||||||||||||||||    
T  26650508 atattctacacatttctgcataatttcatt 26650537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 168 - 211
Target Start/End: Original strand, 32348023 - 32348064
Alignment:
Q  168 gggaaatatttttacaatatattctacacatttctgcataattt 211  Q
    |||| |||||||||||||||  ||||||||||||||||||||||    
T  32348023 gggagatatttttacaatat--tctacacatttctgcataattt 32348064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 165 - 211
Target Start/End: Original strand, 16988076 - 16988120
Alignment:
Q  165 tttgggaaatatttttacaatatattctacacatttctgcataattt 211  Q
    |||||||||||||||||||||||  ||||||||||||||||||||||    
T  16988076 tttgggaaatatttttacaatat--tctacacatttctgcataattt 16988120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 165 - 215
Target Start/End: Original strand, 47310236 - 47310284
Alignment:
Q  165 tttgggaaatatttttacaatatattctacacatttctgcataatttcatt 215  Q
    |||||||||||||||||||||||  |||||||||||||||| |||||||||    
T  47310236 tttgggaaatatttttacaatat--tctacacatttctgcacaatttcatt 47310284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 165 - 215
Target Start/End: Original strand, 35373986 - 35374034
Alignment:
Q  165 tttgggaaatatttttacaatatattctacacatttctgcataatttcatt 215  Q
    |||||||||||||||||||  |||| ||||||||||||||| |||||||||    
T  35373986 tttgggaaatatttttaca--atatgctacacatttctgcacaatttcatt 35374034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 165 - 215
Target Start/End: Original strand, 39619736 - 39619784
Alignment:
Q  165 tttgggaaatatttttacaatatattctacacatttctgcataatttcatt 215  Q
    |||||||||||||||||||  ||||||||||||||| |||| |||||||||    
T  39619736 tttgggaaatatttttaca--atattctacacatttatgcacaatttcatt 39619784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 165 - 214
Target Start/End: Original strand, 44242853 - 44242900
Alignment:
Q  165 tttgggaaatatttttacaatatattctacacatttctgcataatttcat 214  Q
    ||||||||| |||||||||||||  |||||||||||||||| ||||||||    
T  44242853 tttgggaaagatttttacaatat--tctacacatttctgcacaatttcat 44242900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 215
Target Start/End: Complemental strand, 11748411 - 11748369
Alignment:
Q  171 aaatatttttacaatatattctacacatttctgcataatttcatt 215  Q
    |||||||||||||||||  |||||||||||||||| |||||||||    
T  11748411 aaatatttttacaatat--tctacacatttctgcacaatttcatt 11748369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 272 - 301
Target Start/End: Complemental strand, 35795995 - 35795966
Alignment:
Q  272 tataggaactaaaagttgaagaaatttttt 301  Q
    ||||||||||||||||||||||||||||||    
T  35795995 tataggaactaaaagttgaagaaatttttt 35795966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 215
Target Start/End: Original strand, 38203380 - 38203409
Alignment:
Q  186 atattctacacatttctgcataatttcatt 215  Q
    ||||||||||||||||||||||||||||||    
T  38203380 atattctacacatttctgcataatttcatt 38203409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 274 - 302
Target Start/End: Original strand, 1053489 - 1053517
Alignment:
Q  274 taggaactaaaagttgaagaaatttttta 302  Q
    |||||||||||||||||||||||||||||    
T  1053489 taggaactaaaagttgaagaaatttttta 1053517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 165 - 215
Target Start/End: Complemental strand, 138562 - 138514
Alignment:
Q  165 tttgggaaatatttttacaatatattctacacatttctgcataatttcatt 215  Q
    |||| ||||||||||||||||||  |||||||||||||||| |||||||||    
T  138562 tttgcgaaatatttttacaatat--tctacacatttctgcacaatttcatt 138514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 215
Target Start/End: Original strand, 167754 - 167783
Alignment:
Q  186 atattctacacatttctgcataatttcatt 215  Q
    ||||||||||||||||||||||||||||||    
T  167754 atattctacacatttctgcataatttcatt 167783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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