View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2512_high_5 (Length: 672)

Name: NF2512_high_5
Description: NF2512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2512_high_5
NF2512_high_5
[»] chr5 (1 HSPs)
chr5 (15-655)||(2224053-2224668)


Alignment Details
Target: chr5 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 15 - 655
Target Start/End: Complemental strand, 2224668 - 2224053
Alignment:
Q  15 aatattagtttgttgtgtttcacaaagctattgatcgagataacaagaatttcccaacacataaatatcacaattgaaataagttaatttctaataatca 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2224668 aatattagtttgttgtgtttcacaaagctattgatcgagataacaagcatttcccaacacataaatatcacaattgaaataagttaatttctaataatca 2224569  T
Q  115 cgaatcatgaaagcaatgatattattacgaatgaaaatcatatggtgtcagcgatgaaaatcgattgcatgttgtcacttttgagtgcaattgcaatgga 214  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| ||||||                   |||||||    
T  2224568 cgaatcatgcaagcaatgatattattacgaatgaaaatcatatggtgtcagagatggaaatcgattgtatgttg-------------------caatgga 2224488  T
Q  215 gacggttgatgttttgaagtgccaagcccaagatcaatttgttgaatatatgatgtgaatattaattgtaaacaatattactctatttaataacccacta 314  Q
    ||||||||||||||||||||||||||      |||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||    
T  2224487 gacggttgatgttttgaagtgccaag------atcaatttgttgaatatatgatgtgaatattaattgtaaacaatattagtctacttaataacccacta 2224394  T
Q  315 taaatattgaaaggnnnnnnngcaccttgacttttttga---------aaaaggtatatatatatcccaataactatctatcgaaatacaaaaactttta 405  Q
    ||||||||||||||       ||||| ||||||||||||         |||| ||||||||  |||||||   ||||||||| || ||||||||||||      
T  2224393 taaatattgaaaggaaaaaaagcaccatgacttttttgagaaatttcaaaaacgtatatatcgatcccaa---ctatctatccaa-tacaaaaactttag 2224298  T
Q  406 aagnnnnnnnctaaacaattatattggattggattggatcaaatgttagtgttgagctggatgactataacacttatgttgtctttgcttcccttagcca 505  Q
     ||       | ||||||||||||||||||||||     || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2224297 cagaaaaaaaccaaacaattatattggattggat-----cacatgttagtgttgagctggatgactataacacttatgttgtctttgcttcccttagcca 2224203  T
Q  506 tagccaattcagctaagattgcagcagcctctgctgcataacttttaatagtgtgattgtgaacttctttcatattatgcctcctcatatgaccttgaag 605  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  2224202 tagccaattcagctaagattgcagcagcctctgctgcataacttttaatagtgtgattgtgatcttctttcatattatgcctcctcatatgaccttgaag 2224103  T
Q  606 gcaacttctaacaacttcacaaacaaaattatttgatactacatcccaaa 655  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2224102 gcaacttctaacaacttcacaaacaaaattatttgatactacatcccaaa 2224053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University