View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2512_high_52 (Length: 247)
Name: NF2512_high_52
Description: NF2512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2512_high_52 |
 | |
|
| [»] scaffold0097 (1 HSPs) |
| | |
|
| [»] scaffold0760 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 24)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 9562806 - 9562569
Alignment:
| Q |
1 |
gcccaccaccggagcttccaactcttccttttgatcttctgcctgaaattctctgtaggcttccggtgaaattacttgtacagcttcgatgtctgtgtaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
9562806 |
gcccaccaccggagcttccaactcttccttttgatcttctgcctgaaattctctgtaggcttccggtgaaattacttgtacagcttcgatgtctgtgtga |
9562707 |
T |
|
| Q |
101 |
gttcttcaattctttaatttccgatcccaaatttgcaaagaagcaccttcaattgtcaactaagtgccaccacctcttggtaacctcttggaacatttca |
200 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
9562706 |
gttcttcaattctttaatttccaatcccaaatttgcaaagaagcaccttcaattgtcaactaagcgccaccacctcttggtaacctcttggaacatttcg |
9562607 |
T |
|
| Q |
201 |
cgtggtgagtttgttcagcatgatttcccaatcccctt |
238 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9562606 |
cgtggtgagtttgttcagcatgatttcccaatcccctt |
9562569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 1 - 187
Target Start/End: Original strand, 2491303 - 2491489
Alignment:
| Q |
1 |
gcccaccaccggagcttccaactcttccttttgatcttctgcctgaaattctctgtaggcttccggtgaaattacttgtacagcttcgatgtctgtgtaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| | |||||||| ||||| ||||||||||||||||||||||| |||||||||||||| || ||||| |
|
|
| T |
2491303 |
gcccaccaccggagcttccaactcttccttttgatgtcctgcctgagattctgtgtaggcttccggtgaaattactggtacagcttcgatgcctttgtaa |
2491402 |
T |
|
| Q |
101 |
gttcttcaattctttaatttccgatcccaaatttgcaaagaagcaccttcaattgtcaactaagtgccaccacctcttggtaacctc |
187 |
Q |
| |
|
||| ||||||||||||||||| ||||| ||||| ||||| ||||| |||||||||||||| ||| ||||||||||| |||||||||| |
|
|
| T |
2491403 |
gtttttcaattctttaatttctgatcctaaattcgcaaaaaagcatcttcaattgtcaacaaagcgccaccacctcatggtaacctc |
2491489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 13 - 184
Target Start/End: Complemental strand, 7335102 - 7334931
Alignment:
| Q |
13 |
agcttccaactcttccttttgatcttctgcctgaaattctctgtaggcttccggtgaaattacttgtacagcttcgatgtctgtgtaagttcttcaattc |
112 |
Q |
| |
|
||||||| |||||||| |||||| | |||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||| |
|
|
| T |
7335102 |
agcttcctactcttccgtttgatgtcctgcctgagattctgtgtaggcttccggtgaaattactcgtacagcttcgatgtctctgtaagttctttaattc |
7335003 |
T |
|
| Q |
113 |
tttaatttccgatcccaaatttgcaaagaagcaccttcaattgtcaactaagtgccaccacctcttggtaac |
184 |
Q |
| |
|
| | || || ||||| ||||| |||||||||||||||||||||||||| ||| ||||||||||| ||||||| |
|
|
| T |
7335002 |
tgttatctctgatccaaaattcgcaaagaagcaccttcaattgtcaacaaagcgccaccacctcatggtaac |
7334931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 15 - 184
Target Start/End: Original strand, 2474347 - 2474516
Alignment:
| Q |
15 |
cttccaactcttccttttgatcttctgcctgaaattctctgtaggcttccggtgaaattacttgtacagcttcgatgtctgtgtaagttcttcaattctt |
114 |
Q |
| |
|
||||| |||||||| |||||||| |||||||| ||||||||||||||||| || ||||||| |||||||||||| || || ||||||||||| ||||||| |
|
|
| T |
2474347 |
cttcccactcttccctttgatctcctgcctgagattctctgtaggcttcccgtcaaattacctgtacagcttcggtgcctctgtaagttctttaattctt |
2474446 |
T |
|
| Q |
115 |
taatttccgatcccaaatttgcaaagaagcaccttcaattgtcaactaagtgccaccacctcttggtaac |
184 |
Q |
| |
|
|||||||| |||||| ||| |||||||| ||||||||||| |||| ||| ||||||||||| ||||||| |
|
|
| T |
2474447 |
taatttccaatcccagattcgcaaagaaacaccttcaattatcaaacaagcgccaccacctcatggtaac |
2474516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 9 - 176
Target Start/End: Complemental strand, 2659977 - 2659810
Alignment:
| Q |
9 |
ccggagcttccaactcttccttttgatcttctgcctgaaattctctgtaggcttccggtgaaattacttgtacagcttcgatgtctgtgtaagttcttca |
108 |
Q |
| |
|
|||||||||||| |||||||||||||||| |||||||| ||||| ||||||||||||||||||||||| |||||||||||||| | |||||||| |||| |
|
|
| T |
2659977 |
ccggagcttccagctcttccttttgatctcctgcctgagattctgtgtaggcttccggtgaaattactcgtacagcttcgatgcgtttgtaagtttttca |
2659878 |
T |
|
| Q |
109 |
attctttaatttccgatcccaaatttgcaaagaagcaccttcaattgtcaactaagtgccaccacctc |
176 |
Q |
| |
|
||||| | ||||| ||||| || || ||||||||||| |||| ||||||| ||| ||||||||||| |
|
|
| T |
2659877 |
attctcttatttctgatcctaatttcgcaaagaagcatcttcgtatgtcaaccaagcgccaccacctc |
2659810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 2501375 - 2501516
Alignment:
| Q |
1 |
gcccaccaccggagcttccaactcttccttttgatcttctgcctgaaattctctgtaggcttccggtgaaattacttgtacagcttcgatgtctgtgtaa |
100 |
Q |
| |
|
||||||| | ||| ||||||||||||| ||| |||||| ||||||| ||||| || |||||||||||||||||||| |||||||||||||| || ||||| |
|
|
| T |
2501375 |
gcccaccgctggaacttccaactcttcttttcgatcttttgcctgagattctgtgcaggcttccggtgaaattactagtacagcttcgatgcctttgtaa |
2501474 |
T |
|
| Q |
101 |
gttcttcaattctttaatttccgatcccaaatttgcaaagaa |
142 |
Q |
| |
|
||||||||||||||||||||| ||||| ||||| |||||||| |
|
|
| T |
2501475 |
gttcttcaattctttaatttctgatcctaaattcgcaaagaa |
2501516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 12 - 176
Target Start/End: Complemental strand, 7325229 - 7325065
Alignment:
| Q |
12 |
gagcttccaactcttccttttgatcttctgcctgaaattctctgtaggcttccggtgaaattacttgtacagcttcgatgtctgtgtaagttcttcaatt |
111 |
Q |
| |
|
|||||||||||||||||||| ||| | | ||||| |||||||| |||||||| ||||||||||| |||||||||| || || |||||||||||||||| |
|
|
| T |
7325229 |
gagcttccaactcttcctttcgatgtcttacctgagattctctgcaggcttcctgtgaaattactcatacagcttcggtgcctctgtaagttcttcaatt |
7325130 |
T |
|
| Q |
112 |
ctttaatttccgatcccaaatttgcaaagaagcaccttcaattgtcaactaagtgccaccacctc |
176 |
Q |
| |
|
|||||||||| ||||||| || |||||||| || |||||||| ||||||||| ||||||||||| |
|
|
| T |
7325129 |
ctttaatttctgatcccactttcgcaaagaaacatcttcaattatcaactaagcgccaccacctc |
7325065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 11 - 150
Target Start/End: Complemental strand, 2645167 - 2645028
Alignment:
| Q |
11 |
ggagcttccaactcttccttttgatcttctgcctgaaattctctgtaggcttccggtgaaattacttgtacagcttcgatgtctgtgtaagttcttcaat |
110 |
Q |
| |
|
||||||||||||||||||| ||||||| || ||||| ||||| |||||||||||||||||||||||| |||||||||||| | |||||||| |||||| |
|
|
| T |
2645167 |
ggagcttccaactcttcctgttgatctccttcctgagattctttgtaggcttccggtgaaattacttatacagcttcgatacgtttgtaagttattcaat |
2645068 |
T |
|
| Q |
111 |
tctttaatttccgatcccaaatttgcaaagaagcaccttc |
150 |
Q |
| |
|
||||||||||| ||||| ||||| | |||||| ||||||| |
|
|
| T |
2645067 |
tctttaatttctgatcctaaattcgtaaagaaacaccttc |
2645028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 9 - 195
Target Start/End: Complemental strand, 7443829 - 7443643
Alignment:
| Q |
9 |
ccggagcttccaactcttccttttgatcttctgcctgaaattctctgtaggcttccggtgaaattacttgtacagcttcgatgtctgtgtaagttcttca |
108 |
Q |
| |
|
||||||||||| |||||||| || ||||| || ||||| |||||||| |||||||| ||||||||||| |||| ||||| || || ||||||||||||| |
|
|
| T |
7443829 |
ccggagcttcccactcttcccttcgatctcctccctgagattctctgcaggcttcctgtgaaattactcatacaacttcggtgcctctgtaagttcttca |
7443730 |
T |
|
| Q |
109 |
attctttaatttccgatcccaaatttgcaaagaagcaccttcaattgtcaactaagtgccaccacctcttggtaacctcttggaaca |
195 |
Q |
| |
|
||||||||||||| |||||||| || || ||||||||| ||||||| ||| | ||| |||| |||| ||||||||||| |||||| |
|
|
| T |
7443729 |
attctttaatttctgatcccaatttcgccaagaagcactttcaattttcagccaagcatcaccgcctcatggtaacctctaggaaca |
7443643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 14 - 175
Target Start/End: Original strand, 2630570 - 2630731
Alignment:
| Q |
14 |
gcttccaactcttccttttgatcttctgcctgaaattctctgtaggcttccggtgaaattacttgtacagcttcgatgtctgtgtaagttcttcaattct |
113 |
Q |
| |
|
|||||| | |||||| |||||| ||||| |||| |||||||||| |||||||||||||||||| || |||||||| || || ||||||||||||||||| |
|
|
| T |
2630570 |
gcttccgattcttccgtttgatgttctgactgacattctctgtatgcttccggtgaaattactcgtgcagcttcggtgcctttgtaagttcttcaattca |
2630669 |
T |
|
| Q |
114 |
ttaatttccgatcccaaatttgcaaagaagcaccttcaattgtcaactaagtgccaccacct |
175 |
Q |
| |
|
| ||||| ||||| ||||| | ||||||||| ||||||| |||||||||| ||| |||||| |
|
|
| T |
2630670 |
cttatttctgatcctaaattcgtaaagaagcatcttcaatcgtcaactaagcgccgccacct |
2630731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 13 - 176
Target Start/End: Original strand, 2475885 - 2476048
Alignment:
| Q |
13 |
agcttccaactcttccttttgatcttctgcctgaaattctctgtaggcttccggtgaaattacttgtacagcttcgatgtctgtgtaagttcttcaattc |
112 |
Q |
| |
|
||||||| |||||||| |||||| | |||||||| ||||| | |||| | || || |||||||| ||||||||||| || || |||||||| |||||||| |
|
|
| T |
2475885 |
agcttcccactcttccctttgatgtcctgcctgagattctgtttaggttacctgtcaaattactcgtacagcttcggtgcctttgtaagtttttcaattc |
2475984 |
T |
|
| Q |
113 |
tttaatttccgatcccaaatttgcaaagaagcaccttcaattgtcaactaagtgccaccacctc |
176 |
Q |
| |
|
| | ||||| ||||| ||||| |||||||| ||||||||||||||||| ||| ||||||||||| |
|
|
| T |
2475985 |
tcttatttctgatcctaaattcgcaaagaaacaccttcaattgtcaacaaagcgccaccacctc |
2476048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 14 - 175
Target Start/End: Original strand, 13497416 - 13497577
Alignment:
| Q |
14 |
gcttccaactcttccttttgatcttctgcctgaaattctctgtaggcttccggtgaaattacttgtacagcttcgatgtctgtgtaagttcttcaattct |
113 |
Q |
| |
|
|||||| || ||||| |||||||| |||||||| || || ||||||||||||||||| ||||||||||| |||||||| || || ||||| || |||||| |
|
|
| T |
13497416 |
gcttcctacacttccatttgatctcctgcctgagatcctttgtaggcttccggtgaagttacttgtacaacttcgatgcctctgcaagttttttaattct |
13497515 |
T |
|
| Q |
114 |
ttaatttccgatcccaaatttgcaaagaagcaccttcaattgtcaactaagtgccaccacct |
175 |
Q |
| |
|
|| || || ||||| |||| ||||||||||||||||| |||||||| | | |||||||||| |
|
|
| T |
13497516 |
ttgatctctgatcctgaattcgcaaagaagcaccttcatttgtcaaccatgcgccaccacct |
13497577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 9 - 176
Target Start/End: Complemental strand, 9595461 - 9595294
Alignment:
| Q |
9 |
ccggagcttccaactcttccttttgatcttctgcctgaaattctctgtaggcttccggtgaaattacttgtacagcttcgatgtctgtgtaagttcttca |
108 |
Q |
| |
|
||||||||||||||||||||||| ||||| | |||||||||| || |||||||| ||||| || || | || |||||||| | ||||||||||| |
|
|
| T |
9595461 |
ccggagcttccaactcttcctttcgatctaattgctgaaattctatgcaggcttcctgtgaagtttctctttcaacttcgatgcgtatgtaagttctttc |
9595362 |
T |
|
| Q |
109 |
attctttaatttccgatcccaaatttgcaaagaagcaccttcaattgtcaactaagtgccaccacctc |
176 |
Q |
| |
|
||||| | ||||| ||||| |||||||||||||| ||||||||||||||||| ||| ||||||||||| |
|
|
| T |
9595361 |
attctcttatttctgatccaaaatttgcaaagaatcaccttcaattgtcaacaaagcgccaccacctc |
9595294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 15 - 195
Target Start/End: Complemental strand, 747954 - 747774
Alignment:
| Q |
15 |
cttccaactcttccttttgatcttctgcctgaaattctctgtaggcttccggtgaaattacttgtacagcttcgatgtctgtgtaagttcttcaattctt |
114 |
Q |
| |
|
||||| |||||||| || ||| || | ||||| ||||| |||||||||| | |||||||| ||||| |||||||| || |||||||| || ||||| |
|
|
| T |
747954 |
cttcccactcttccattcgatgttttccctgagtttctcggtaggcttcccatcaaattactcgtacaacttcgatgcctctgtaagtttttttattctc |
747855 |
T |
|
| Q |
115 |
taatttccgatcccaaatttgcaaagaagcaccttcaattgtcaactaagtgccaccacctcttggtaacctcttggaaca |
195 |
Q |
| |
|
| ||| | ||||| | ||| |||||||||||||||||||| ||||||||| ||||||||||| || ||||||||||||||| |
|
|
| T |
747854 |
ttattgctgatccaacattcgcaaagaagcaccttcaattatcaactaagcgccaccacctcatgataacctcttggaaca |
747774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 13 - 176
Target Start/End: Complemental strand, 9566653 - 9566490
Alignment:
| Q |
13 |
agcttccaactcttccttttgatcttctgcctgaaattctctgtaggcttccggtgaaattacttgtacagcttcgatgtctgtgtaagttcttcaattc |
112 |
Q |
| |
|
||||||| |||||||| || ||| | ||||||| ||||| ||||||||||| |||||||||| | ||||||||| || || || |||| ||||||||| |
|
|
| T |
9566653 |
agcttcctactcttcccttcgatgtcttgcctgagattctttgtaggcttcccatgaaattactcggacagcttcggtgcctctgcaagtccttcaattc |
9566554 |
T |
|
| Q |
113 |
tttaatttccgatcccaaatttgcaaagaagcaccttcaattgtcaactaagtgccaccacctc |
176 |
Q |
| |
|
| | ||||| ||||| ||||| ||||| || || |||||||||||||| ||| |||| |||||| |
|
|
| T |
9566553 |
tcttatttctgatccaaaattcgcaaaaaaacatcttcaattgtcaacaaagcgccatcacctc |
9566490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 13 - 176
Target Start/End: Complemental strand, 755463 - 755300
Alignment:
| Q |
13 |
agcttccaactcttccttttgatcttctgcctgaaattctctgtaggcttccggtgaaattacttgtacagcttcgatgtctgtgtaagttcttcaattc |
112 |
Q |
| |
|
||||||| |||||||| | ||| | |||||||| ||||| ||||||||||| | |||||||| | |||||| || || || ||||||| |||||||| |
|
|
| T |
755463 |
agcttcctactcttccaatcgatgtcctgcctgagattctttgtaggcttcccatcaaattactcggacagctgcggtgcctctgtaagtctttcaattc |
755364 |
T |
|
| Q |
113 |
tttaatttccgatcccaaatttgcaaagaagcaccttcaattgtcaactaagtgccaccacctc |
176 |
Q |
| |
|
| | ||||| ||||| ||||| ||||| || || |||||||||||||| ||| ||||||||||| |
|
|
| T |
755363 |
tcttatttctgatccaaaattcgcaaaaaaacatcttcaattgtcaacaaagcgccaccacctc |
755300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 84 - 195
Target Start/End: Complemental strand, 679967 - 679856
Alignment:
| Q |
84 |
cttcgatgtctgtgtaagttcttcaattctttaatttccgatcccaaatttgcaaagaagcaccttcaattgtcaactaagtgccaccacctcttggtaa |
183 |
Q |
| |
|
|||||||| || |||||||| || ||||| | ||| | ||||| | ||| |||||||||||||||||||| ||||||||| ||||| ||||| || ||| |
|
|
| T |
679967 |
cttcgatgcctctgtaagtttttttattctcttattgctgatccaacattcgcaaagaagcaccttcaattatcaactaagcgccacaacctcatgataa |
679868 |
T |
|
| Q |
184 |
cctcttggaaca |
195 |
Q |
| |
|
|||||||||||| |
|
|
| T |
679867 |
cctcttggaaca |
679856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 24 - 160
Target Start/End: Complemental strand, 7428427 - 7428291
Alignment:
| Q |
24 |
cttccttttgatcttctgcctgaaattctctgtaggcttccggtgaaattacttgtacagcttcgatgtctgtgtaagttcttcaattctttaatttccg |
123 |
Q |
| |
|
||||| ||||||||| | | |||||| | ||||| ||||||| || ||||| | |||||||| || || ||||||| ||||||||||||||| || | |
|
|
| T |
7428427 |
cttccgtttgatcttgttgcagaaattttgtgtagaattccggtaaagttactcattcagcttcgctgcctctgtaagtgcttcaattctttaatctctg |
7428328 |
T |
|
| Q |
124 |
atcccaaatttgcaaagaagcaccttcaattgtcaac |
160 |
Q |
| |
|
|||||||||||||| ||||||| |||| |||||||| |
|
|
| T |
7428327 |
atcccaaatttgcagagaagcatcttcgcttgtcaac |
7428291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 24 - 160
Target Start/End: Original strand, 12217253 - 12217389
Alignment:
| Q |
24 |
cttccttttgatcttctgcctgaaattctctgtaggcttccggtgaaattacttgtacagcttcgatgtctgtgtaagttcttcaattctttaatttccg |
123 |
Q |
| |
|
||||| ||||||||| | | |||||| | ||||| ||||||| || ||||| | |||||||| || || ||||||| ||||||||||||||| || | |
|
|
| T |
12217253 |
cttccgtttgatcttgttgcagaaattttgtgtagaattccggtaaagttactcattcagcttcgctgcctctgtaagtccttcaattctttaatctctg |
12217352 |
T |
|
| Q |
124 |
atcccaaatttgcaaagaagcaccttcaattgtcaac |
160 |
Q |
| |
|
|||||||||||||| |||| || |||| |||||||| |
|
|
| T |
12217353 |
atcccaaatttgcagagaaacatcttcgcttgtcaac |
12217389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 45 - 160
Target Start/End: Original strand, 2455099 - 2455214
Alignment:
| Q |
45 |
gaaattctctgtaggcttccggtgaaattacttgtacagcttcgatgtctgtgtaagttcttcaattctttaatttccgatcccaaatttgcaaagaagc |
144 |
Q |
| |
|
|||||||| || ||||||| ||||| ||||| || |||||||| || || || |||| ||| |||||| | || || |||||||||||||| || |||| |
|
|
| T |
2455099 |
gaaattctgtgccggcttcctgtgaagttactcgtgcagcttcgctgcctctgcaagtcctttaattctcttatatctgatcccaaatttgctaaaaagc |
2455198 |
T |
|
| Q |
145 |
accttcaattgtcaac |
160 |
Q |
| |
|
|||||||| ||||||| |
|
|
| T |
2455199 |
accttcaaatgtcaac |
2455214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 84 - 176
Target Start/End: Complemental strand, 759465 - 759373
Alignment:
| Q |
84 |
cttcgatgtctgtgtaagttcttcaattctttaatttccgatcccaaatttgcaaagaagcaccttcaattgtcaactaagtgccaccacctc |
176 |
Q |
| |
|
||||||||| | || |||| |||||||||| || | ||||||||||| ||||||||||| ||||||| ||||||| ||||||||||||| |
|
|
| T |
759465 |
cttcgatgtgtttgcaagtccttcaattctatagtctccgatcccaattttgcaaagaaccaccttcgcttgtcaatcccgtgccaccacctc |
759373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 160
Target Start/End: Complemental strand, 772348 - 772209
Alignment:
| Q |
21 |
actcttccttttgatcttctgcctgaaattctctgtaggcttccggtgaaattacttgtacagcttcgatgtctgtgtaagttcttcaattctttaattt |
120 |
Q |
| |
|
|||||||| || |||||| || | || ||||| || ||||||| || || ||||| || |||||||| || || || |||| ||| ||| || |||| | |
|
|
| T |
772348 |
actcttccattcgatcttgtggcggagattctgtgccggcttcctgtaaagttactcgtgcagcttcgctgcctctgcaagtcctttaatactctaatat |
772249 |
T |
|
| Q |
121 |
ccgatcccaaatttgcaaagaagcaccttcaattgtcaac |
160 |
Q |
| |
|
| |||||||||||||| || |||||||||||| ||||||| |
|
|
| T |
772248 |
ctgatcccaaatttgctaaaaagcaccttcaaatgtcaac |
772209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 150
Target Start/End: Complemental strand, 37758564 - 37758435
Alignment:
| Q |
21 |
actcttccttttgatcttctgcctgaaattctctgtaggcttccggtgaaattacttgtacagcttcgatgtctgtgtaagttcttcaattctttaattt |
120 |
Q |
| |
|
||||||||||| ||| | || | |||||||| ||||||||||| || || ||||| |||| || ||||| || || |||| ||| ||||||||||| | |
|
|
| T |
37758564 |
actcttcctttcgatttggtggcagaaattctatgtaggcttcctgtcaagttactcttacaactccgatgcctctgcaagtccttgaattctttaatct |
37758465 |
T |
|
| Q |
121 |
ccgatcccaaatttgcaaagaagcaccttc |
150 |
Q |
| |
|
||||||||||| || |||||||| |||| |
|
|
| T |
37758464 |
tggatcccaaattcgctaagaagcatcttc |
37758435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 160
Target Start/End: Complemental strand, 37754104 - 37754040
Alignment:
| Q |
96 |
tgtaagttcttcaattctttaatttccgatcccaaatttgcaaagaagcaccttcaattgtcaac |
160 |
Q |
| |
|
||||||| |||||| ||| | || |||||||| ||||| ||||||||||||||||| | |||||| |
|
|
| T |
37754104 |
tgtaagtccttcaactctcttatctccgatccaaaattcgcaaagaagcaccttcattcgtcaac |
37754040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0097 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: scaffold0097
Description:
Target: scaffold0097; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 2 - 176
Target Start/End: Original strand, 33878 - 34052
Alignment:
| Q |
2 |
cccaccaccggagcttccaactcttccttttgatcttctgcctgaaattctctgtaggcttccggtgaaattacttgtacagcttcgatgtctgtgtaag |
101 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||| | ||||| ||||| |||||||||||||| |||||||| |||| || ||||| || |||||| |
|
|
| T |
33878 |
cccaccgccggagcttccaactcttccttttgatctcatacctgagattctatgtaggcttccggtcaaattactcatacaactccgatgcctctgtaag |
33977 |
T |
|
| Q |
102 |
ttcttcaattctttaatttccgatcccaaatttgcaaagaagcaccttcaattgtcaactaagtgccaccacctc |
176 |
Q |
| |
|
||||| ||||||| || || |||||||| || |||||||| |||||||| ||||||| ||| |||||||||| |
|
|
| T |
33978 |
ttctttgattctttgatctcagatcccaatttcgcaaagaaacaccttcatatgtcaaccaagcaccaccacctc |
34052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 18 - 160
Target Start/End: Complemental strand, 24418296 - 24418154
Alignment:
| Q |
18 |
ccaactcttccttttgatcttctgcctgaaattctctgtaggcttccggtgaaattacttgtacagcttcgatgtctgtgtaagttcttcaattctttaa |
117 |
Q |
| |
|
||||||||||| || |||||| | |||| ||||| ||||||||||| ||||| ||||| | || ||||| ||||| || |||| ||||||||| |||| |
|
|
| T |
24418296 |
ccaactcttcccttcgatcttgtagctgagattctgtgtaggcttcccgtgaagttactccttcaacttcgctgtctctgcaagtccttcaattcattaa |
24418197 |
T |
|
| Q |
118 |
tttccgatcccaaatttgcaaagaagcaccttcaattgtcaac |
160 |
Q |
| |
|
| || ||||||||||| ||||| |||||||||| |||||||| |
|
|
| T |
24418196 |
tctctgatcccaaattcgcaaacaagcaccttcgcttgtcaac |
24418154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0760 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0760
Description:
Target: scaffold0760; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 105 - 183
Target Start/End: Original strand, 3951 - 4029
Alignment:
| Q |
105 |
ttcaattctttaatttccgatcccaaatttgcaaagaagcaccttcaattgtcaactaagtgccaccacctcttggtaa |
183 |
Q |
| |
|
||||| || |||||||| |||| ||||| | |||||||||||||| |||||||| ||| |||||||||||||||||| |
|
|
| T |
3951 |
ttcaaatccttaatttctgatcataaattcggtaagaagcaccttcagttgtcaacaaagcgccaccacctcttggtaa |
4029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 59 - 160
Target Start/End: Original strand, 27754903 - 27755004
Alignment:
| Q |
59 |
gcttccggtgaaattacttgtacagcttcgatgtctgtgtaagttcttcaattctttaatttccgatcccaaatttgcaaagaagcaccttcaattgtca |
158 |
Q |
| |
|
|||||| ||||| ||||| | || ||| |||| || ||||||| ||| ||||||||||| |||||||| |||||||| ||||| ||||||| |||||| |
|
|
| T |
27754903 |
gcttcccgtgaagttactacttcaactttgatgcctctgtaagtcctttaattctttaatctccgatccaaaatttgccaagaaacaccttcgcttgtca |
27755002 |
T |
|
| Q |
159 |
ac |
160 |
Q |
| |
|
|| |
|
|
| T |
27755003 |
ac |
27755004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 99 - 160
Target Start/End: Original strand, 20305151 - 20305212
Alignment:
| Q |
99 |
aagttcttcaattctttaatttccgatcccaaatttgcaaagaagcaccttcaattgtcaac |
160 |
Q |
| |
|
|||| |||||||||| |||| ||||||||||||| || ||||||||||||| |||||||| |
|
|
| T |
20305151 |
aagtccttcaattctctaatcaccgatcccaaattcgccaagaagcaccttcgcttgtcaac |
20305212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 99 - 160
Target Start/End: Original strand, 20309555 - 20309616
Alignment:
| Q |
99 |
aagttcttcaattctttaatttccgatcccaaatttgcaaagaagcaccttcaattgtcaac |
160 |
Q |
| |
|
|||| |||||||||| |||| ||||||||||||| || ||||||||||||| |||||||| |
|
|
| T |
20309555 |
aagtccttcaattctctaatcaccgatcccaaattcgccaagaagcaccttcgcttgtcaac |
20309616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 175
Target Start/End: Original strand, 20292291 - 20292367
Alignment:
| Q |
99 |
aagttcttcaattctttaatttccgatcccaaatttgcaaagaagcaccttcaattgtcaactaagtgccaccacct |
175 |
Q |
| |
|
|||| |||||||||| |||| || |||||||||| || ||||||||||||| |||||||| | | |||||||||| |
|
|
| T |
20292291 |
aagtccttcaattctctaatcaccaatcccaaattcgccaagaagcaccttcgcttgtcaacaacgcgccaccacct |
20292367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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