View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2512_high_6 (Length: 654)

Name: NF2512_high_6
Description: NF2512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2512_high_6
NF2512_high_6
[»] chr3 (1 HSPs)
chr3 (10-635)||(38480342-38480972)


Alignment Details
Target: chr3 (Bit Score: 478; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 478; E-Value: 0
Query Start/End: Original strand, 10 - 635
Target Start/End: Original strand, 38480342 - 38480972
Alignment:
Q  10 cgaagaatatcaaccaaaacaaaacgagcaggatacgtatgtgctcaaatattaacatatttgatagtttcttttatgaattaacatatgtgatagttaa 109  Q
    |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38480342 cgaaaaatatcaaccaaaacaaaacaagcaggatacgtatgtgctcaaatattaacatatttgatagtttcttttatgaattaacatatgtgatagttaa 38480441  T
Q  110 accaaacaaccaaacagacggaaataatctgacaacgatctttgagaagctcatttgctgccaaataaggttttaaaaatcaataaacaactgcaaattt 209  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  38480442 accaaacaaccaaacagaaggaaataatctgacaacgatctttgagaagctcatttgctgccaaataaggttttaaaaatcgataaacaactgcaaattt 38480541  T
Q  210 tggtcgcattataaaggnnnnnnnacatctcttcaacatatttgcaagcttgcaaccacaattacggccacccaaaagcacttggatgagatggtaagtg 309  Q
    |||||||||||||||||       || |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38480542 tggtcgcattataaaggtttttttacttctcttcaacatatttgcaatcttgcaaccacaattacggccacccaaaagcacttggatgagatggtaagtg 38480641  T
Q  310 ctctcttcccctaggaatgcaaaaatgttgaggaagcgttgtgccacccattgcgattctacccagttcgaggg-ttagtctctgcagttgcccgcagat 408  Q
    ||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||    
T  38480642 ctctcttcctctgggaatgcaaaaatgttgaggaagcgttgtgccacccattgcgattctactcagttcgagggattagtctctgcggttgcccgcagat 38480741  T
Q  409 ga-actcaattcaaacaaacaaac--nnnnnnnncacaattacgaccaaatcagccatatttggcggtaattttccacaatatcaagaattttgacttaa 505  Q
    || |||||||||||||||||||||          |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  38480742 gatactcaattcaaacaaacaaacaaaaaaaaaacacaattacgaccaaatcagccatatttggcggtaattttccacaatatcaagaatcttgacttaa 38480841  T
Q  506 aagcatgctatttatggaaagaatacgcttaacgacaag-nnnnnnnggtcgtagcctagttctctctaaaatatagtatatagtatgaaataatgaaaa 604  Q
    |||||||||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38480842 aagcatgctatttatggaaagaatacgcttaacgacaagaaaaaaaaagtcgtagcctagttctctctaaaatatagtatatagtatgaaataatgaaaa 38480941  T
Q  605 actcttgattagaatccaacattcaagtcca 635  Q
    |||||||| ||||||||||||||||||||||    
T  38480942 actcttgactagaatccaacattcaagtcca 38480972  T

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