View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2512_high_7 (Length: 649)
Name: NF2512_high_7
Description: NF2512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2512_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 461; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 27 - 633
Target Start/End: Original strand, 1996151 - 1996762
Alignment:
| Q |
27 |
caacaaacaagtaaaaagctaagaaatttgccgagggcgatttggtttggaagtttgtcctaccaattagaacgaaagatcctaagtatgggaagtggtc |
126 |
Q |
| |
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||||||||||||| |||||||||||||||| ||||||| |||||||| |||| ||||||||||||| ||||||||||||||||||||||||||| |||| |
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| T |
1996151 |
caacaaacaagtacaaagctaagaaatttgttgagggcggtttggtttcgaagattgtcctaccaatcagaacgaaagatcctaagtatgggaagcggtc |
1996250 |
T |
|
| Q |
127 |
accaaattgggaaggaaatttcgttattggcaaaatgtatgacgataatataaattaaacatcgcatatatgccacaatattttcaattttaggcatgca |
226 |
Q |
| |
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|||||||||||||||| ||||||||||| |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1996251 |
accaaattgggaaggagatttcgttattagcaaggtgtatgacgatcatataaattaaacatcgcatatatgccacaatattttcaattttaggcatgca |
1996350 |
T |
|
| Q |
227 |
ctctccgttcaagagtaatataaatccccttgtttaaaattcataagcgtaacaatattttgatataaaattaaagttacaggctttgaagtcaaaaatt |
326 |
Q |
| |
|
|||||| |||||||||||||||||||| | ||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
1996351 |
ctctccattcaagagtaatataaatccacatgtttaaaattcataagtgtaacaatattttgatgtaaaattaaagttacaggctttgaagtcaaaaatt |
1996450 |
T |
|
| Q |
327 |
attttcaatcctaactattacaaatactagtgtgttaactcatgtcatgcccaagctacaaactac-------taatctctaaaattatcagttatgaaa |
419 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| |
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|
| T |
1996451 |
atttccaatcctaactattacaaatactagtgtgttagctcatgtcatgcccaagcgacaaactactgttttttaatctctaaaattatcagttatgaaa |
1996550 |
T |
|
| Q |
420 |
tctttattattcaaatgatgtttcataaacgagtaaacgttcattttcatccttacatgggtgagtcgttaatgcagttcgtaaatgtatcagaattaca |
519 |
Q |
| |
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| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
1996551 |
tttttattattcaaatgatgtttcataaatgagtaaacgttcattttcatccttacatgggtgagtcgtcaatgcagttcgtaaatgtatcagaattaca |
1996650 |
T |
|
| Q |
520 |
taaacatagtcaagtgtgtattctattggtaatttcatagatcgaactatctaacaaaagacacgtctgaatactactatagctaataaaagacacactt |
619 |
Q |
| |
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|||||||| |||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| |||||||||||||| ||||||||||||||| || |
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| T |
1996651 |
taaacataatcaagtgtgtattctattagtaatttcatagatcaaactatctaacaaaagacacg--tgaatactactataactaataaaagacacattt |
1996748 |
T |
|
| Q |
620 |
gaatatgtttttgt |
633 |
Q |
| |
|
|||||||||||||| |
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| T |
1996749 |
gaatatgtttttgt |
1996762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 20 - 388
Target Start/End: Original strand, 1952964 - 1953334
Alignment:
| Q |
20 |
acgcttgcaacaaacaagtaaaaagctaagaaatttgccgagggcgatttggtttggaagtttgtcctaccaattagaacgaaagatcctaagtatggga |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
1952964 |
acgcttgcaacaaacaagtaaaaagctaagaa-tttgccgagggcgatttggtttggaagtctgtcctaccaattagaacgaaagatcctaagtatggga |
1953062 |
T |
|
| Q |
120 |
agtggtcaccaaattgggaaggaaatttcgttattggcaaaatgtatgacgataatataaattaaacatcgcatatatgc----cacaatattttcaatt |
215 |
Q |
| |
|
|| |||||||||||||||||| | ||||||||||| |||| ||||||| ||| |||||||||||||||||||| | | ||||| |||||||||| |
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|
| T |
1953063 |
agcggtcaccaaattgggaag-agatttcgttattagcaaggtgtatgatgatcatataaattaaacatcgcatgtttaaaattcacaagattttcaatt |
1953161 |
T |
|
| Q |
216 |
ttaggcatgcactctccgttcaagagtaatataaatccccttgtttaaaattcataagcgtaacaatattttgatataaaattaaagttacaggctttga |
315 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||| | ||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
1953162 |
ttaggtatgcactctccgttcaagagtaatataaatccacatgtttaaaattcataagtgtaacaatattttgatgtaaaattaaagttacaggctttga |
1953261 |
T |
|
| Q |
316 |
agtcaaaaattattttcaatcctaactattacaaatactagtgtgttaactcatgtcatgcccaagctacaaa |
388 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
1953262 |
agtcaaaaattattttcagtcctaactattacaaatactagtgtgttaactcatgtcatgcccgagctacaaa |
1953334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 200 - 324
Target Start/End: Original strand, 33077927 - 33078051
Alignment:
| Q |
200 |
cacaatattttcaattttaggcatgcactctccgttcaagagtaatataaatccccttgtttaaaattcataagcgtaacaatattttgatataaaatta |
299 |
Q |
| |
|
|||||||||||||||| | | |||||| || | || ||||||||||||||| | |||||| ||| | ||||| ||||||||||||| ||||||| ||| |
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|
| T |
33077927 |
cacaatattttcaattgttgtgatgcacgcttcatttaagagtaatataaatacaattgtttgaaaattataagtgtaacaatatttttatataaactta |
33078026 |
T |
|
| Q |
300 |
aagttacaggctttgaagtcaaaaa |
324 |
Q |
| |
|
|| ||| |||||||||||| ||||| |
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|
| T |
33078027 |
aaattataggctttgaagtaaaaaa |
33078051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 200 - 313
Target Start/End: Original strand, 1937515 - 1937628
Alignment:
| Q |
200 |
cacaatattttcaattttaggcatgcactctccgttcaagagtaatataaatccccttgtttaaaattcataagcgtaacaatattttgatataaaatta |
299 |
Q |
| |
|
|||||||||||| | | || | |||||||||||||||||||| ||||||||| | |||||| ||| ||||||| || |||||||||| |||||||| |
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|
| T |
1937515 |
cacaatattttcgactataaggatgcactctccgttcaagagaaatataaattcaattgtttgaaaatcataagtgttctaatattttgacataaaattg |
1937614 |
T |
|
| Q |
300 |
aagttacaggcttt |
313 |
Q |
| |
|
|||||| ||||||| |
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| T |
1937615 |
aagttataggcttt |
1937628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 256 - 303
Target Start/End: Original strand, 4594769 - 4594816
Alignment:
| Q |
256 |
ttgtttaaaattcataagcgtaacaatattttgatataaaattaaagt |
303 |
Q |
| |
|
||||| |||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
4594769 |
ttgttgaaaattcataagcgtaacaatattatgatataaaattaaagt |
4594816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 262 - 303
Target Start/End: Original strand, 4663079 - 4663120
Alignment:
| Q |
262 |
aaaattcataagcgtaacaatattttgatataaaattaaagt |
303 |
Q |
| |
|
||||||||||||||| |||||||| |||||||||||| |||| |
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|
| T |
4663079 |
aaaattcataagcgtgacaatattatgatataaaattgaagt |
4663120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 270 - 331
Target Start/End: Complemental strand, 26310333 - 26310272
Alignment:
| Q |
270 |
taagcgtaacaatattttgatataaaattaaagttacaggctttgaagtcaaaaattatttt |
331 |
Q |
| |
|
|||| |||| |||||| ||||||||||||||||||| ||| |||||||| ||| |||||||| |
|
|
| T |
26310333 |
taagtgtaataatattgtgatataaaattaaagttataggatttgaagtaaaatattatttt |
26310272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 87 - 160
Target Start/End: Complemental strand, 19122426 - 19122353
Alignment:
| Q |
87 |
taccaattagaacgaaagatcctaagtatgggaagtggtcaccaaattgggaaggaaatttcgttattggcaaa |
160 |
Q |
| |
|
|||| ||| |||||||||||||||||||||| || ||| ||||||||||||||| |||||||||| ||||| |
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|
| T |
19122426 |
taccgattggaacgaaagatcctaagtatggaaaatgggtgccaaattgggaaggacctttcgttattagcaaa |
19122353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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