View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2512_low_1 (Length: 1131)
Name: NF2512_low_1
Description: NF2512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2512_low_1 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 1035; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 1035; E-Value: 0
Query Start/End: Original strand, 23 - 1131
Target Start/End: Complemental strand, 54075689 - 54074584
Alignment:
| Q |
23 |
caagtgcataatcctttggattttgagtacaaaatactgtgagagaatccagcttcttgagtcttaggccaaatccaaagcaacgtgcttatattataac |
122 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54075689 |
caagtgcataatcctttggattttgagtacaaaatactgtgtgagaatccagcttcttgagtcttaggccaaatccaaagcaacgtgcttatattataac |
54075590 |
T |
|
| Q |
123 |
cctcttcacaaagctccttaattattctctccaaatcatcatcatcatcgcttccattatcatacaatatgaaattttccactcccacttttgaatgata |
222 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54075589 |
cctcttcacgaagctccttaattattctctccaaatcatcatcatc---gcttccattatcatacaatatgaaattttccactcccacttttgaatgata |
54075493 |
T |
|
| Q |
223 |
cacaacccattccctcaaaaacttcgccacattataaaccatcgtgcatgcacaaaggaaatatttgggctgggccggaggcccaaacttttgaacagcc |
322 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |
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| T |
54075492 |
cacaacccattccctcaaaaacttcgccacattataaaccatcgtgcatgcacaaaggaaatatttgggctgggccggaggcccaaagttttgaactgcc |
54075393 |
T |
|
| Q |
323 |
acgggcttagaattgggtttattgggcctgggagtgtaatacgctacggacggaaccacgatgttttctccaataatctcgagggaaacaccaattttgg |
422 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || |
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| T |
54075392 |
acgggcttagaattgggtttattgggcctgggagtgtaatacgctacggacggaaccacgatgttttctccaataatctcgagggaaactccaatttcgg |
54075293 |
T |
|
| Q |
423 |
aattcgaacccaaatcagacggatctggatgcaagcatcggaaaacctcttgaacagagcttgtaacggcggtgcgaattccgtctcctatttggaaaac |
522 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54075292 |
aattcgaacccaaatcagacggatctggatgcaagcatcggaaaacctcttgaacagagcttgtaacggcggtgcgaattccgtctcctatttggaaaac |
54075193 |
T |
|
| Q |
523 |
acagttaagctccttcgccggcctgtcgtagccttgacgatgattcacacctttggcaaacaaaacgacgtcgtcttccattgaaaaagactcgtaaaca |
622 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
54075192 |
acagttaagctccttcgccggcctgtcgtagccttgacgatgattaacacctttggcaaacaaaactacgtcgtcttccattgaaaaagactcgtaaaca |
54075093 |
T |
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| Q |
623 |
acaaaattccacctcacaagctccgtcgccggagaatgattttgaaattcattttccgacgttccggttaccaacataggttgcgaaaatattttccggc |
722 |
Q |
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| T |
54075092 |
acaaaattccacctcacaagctccgccgccggagaatgattttgaaattcattttccgacgttccggttaccaacataggttgcgaaaatattttccggc |
54074993 |
T |
|
| Q |
723 |
gccaaaccgtactcggcatgtcgcacttgaacgttgtacggttggtgaaaggtaaaacaccagagaatttcgcctgagacatttggttgttccggaaaag |
822 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54074992 |
gccaaaccgtacccggcatgtcgcacttgaacgttgtacggttggtgaaaggtaaaacaccagagaatttcgcctgagacatttggttgttccggaaaag |
54074893 |
T |
|
| Q |
823 |
gcagttatattcatcggaagaagataaaggcgtgtttggagaaacgagaacgagaatctcccaatctggtaataaaactgaaaccgttgagaacgagttt |
922 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54074892 |
gcagttatattcatcggaagaagataaaggcgtgtttggagaaacgagaacgagaatctcccaatctggtaataaaactgaaaccgttgagaacgagttt |
54074793 |
T |
|
| Q |
923 |
ctgaagttgatggatgaaacacgacgtgattggtgtgaaaactcgttgacgatgttgttgtttttgtttgcattggtatgaacgacaacgtgattttttg |
1022 |
Q |
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| T |
54074792 |
ctgaagttgatggatgaaacacgacgtgattggtgtgaaaactcgttgacgatgttgttgtttttgtttgcattggtatgaacgacaacgtgattttttg |
54074693 |
T |
|
| Q |
1023 |
cgtttagcttccatggacgatcgtctaggtcgtaatcagggctccaaccagaaacggcgtgacgagagagatgaagagaaaatgcggcaaataaaagaat |
1122 |
Q |
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||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| | |||||||||||||||||||||||| |||||||||||||| |
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| T |
54074692 |
cgtttagcttccatggacgatcgtcaaggtcgtaatcaggtctccaaccagaaacggcatcacgagagagatgaagagaaaatgcagcaaataaaagaat |
54074593 |
T |
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| Q |
1123 |
agaaagtaa |
1131 |
Q |
| |
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||||||||| |
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| T |
54074592 |
agaaagtaa |
54074584 |
T |
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Target: chr2 (Bit Score: 86; Significance: 2e-40; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 86; E-Value: 2e-40
Query Start/End: Original strand, 556 - 645
Target Start/End: Original strand, 3229393 - 3229482
Alignment:
| Q |
556 |
ttgacgatgattcacacctttggcaaacaaaacgacgtcgtcttccattgaaaaagactcgtaaacaacaaaattccacctcacaagctc |
645 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3229393 |
ttgacgatgattcacacctttggcaaacaaaacgacgtcgtcctccattgaaaaagactcgtaaacaacaaaattccacctcacaagctc |
3229482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 1e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 440 - 509
Target Start/End: Original strand, 48529190 - 48529259
Alignment:
| Q |
440 |
gacggatctggatgcaagcatcggaaaacctcttgaacagagcttgtaacggcggtgcgaattccgtctc |
509 |
Q |
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|||||||||||||| | |||| ||||||||||||||| ||||||||||||||||||| ||||||||||| |
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| T |
48529190 |
gacggatctggatggaggcatgggaaaacctcttgaatggagcttgtaacggcggtgcaaattccgtctc |
48529259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 462 - 509
Target Start/End: Complemental strand, 34849783 - 34849736
Alignment:
| Q |
462 |
ggaaaacctcttgaacagagcttgtaacggcggtgcgaattccgtctc |
509 |
Q |
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|||||||||||||||| |||||||||||||||||||||||| |||||| |
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| T |
34849783 |
ggaaaacctcttgaacggagcttgtaacggcggtgcgaattacgtctc |
34849736 |
T |
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